70 Publications (Page 1 of 3)
2021
mRNA Vaccines Induce Rapid Antibody Responses in Mice.
Gebre, Makda S⋅Rauch, Susanne⋅Roth, Nicole⋅Gergen, Janina⋅Yu, Jingyou⋅Liu, Xiaowen⋅Cole, Andrew C⋅Mueller, Stefan O⋅Petsch, Benjamin and Barouch, Dan H
bioRxiv : the preprint server for biology, November 2, 2021. | Journal Article
 
Optimization of Non-Coding Regions for a Non-Modified mRNA COVID-19 Vaccine.
Gebre, Makda S⋅Gebre, Makda S⋅Rauch, Susanne⋅Rauch, Susanne⋅Roth, Nicole⋅Roth, Nicole⋅Yu, Jingyou⋅Yu, Jingyou⋅Chandrashekar, Abishek⋅Chandrashekar, Abishek⋅Mercado, Noe B⋅Mercado, Noe B⋅He, Xuan⋅He, Xuan⋅Liu, Jinyan⋅Liu, Jinyan⋅McMahan, Katherine⋅McMahan, Katherine⋅Martinot, Amanda⋅Martinot, Amanda⋅Martinez, David R⋅Martinez, David R⋅Giffin, Tori⋅Giffin, Tori⋅Hope, David⋅Hope, David⋅Patel, Shivani⋅Patel, Shivani⋅Sellers, Daniel⋅Sellers, Daniel⋅Sanborn, Owen⋅Sanborn, Owen⋅Barrett, Julia⋅Barrett, Julia⋅Liu, Xiaowen⋅Liu, Xiaowen⋅Cole, Andrew C⋅Cole, Andrew C⋅Pessaint, Laurent⋅Pessaint, Laurent⋅Valentin, Daniel⋅Valentin, Daniel⋅Flinchbaugh, Zack⋅Flinchbaugh, Zack⋅Yalley-Ogunro, Jake⋅Yalley-Ogunro, Jake⋅Muench, Jeanne⋅Muench, Jeanne⋅Brown, Renita⋅Brown, Renita⋅Cook, Anthony⋅Cook, Anthony⋅Teow, Elyse⋅Teow, Elyse⋅Andersen, Hanne⋅Andersen, Hanne⋅Lewis, Mark G⋅Lewis, Mark G⋅Boon, Adrianus C M⋅Boon, Adrianus C M⋅Baric, Ralph S⋅Baric, Ralph S⋅Mueller, Stefan O⋅Mueller, Stefan O⋅Petsch, Benjamin⋅Petsch, Benjamin⋅Barouch, Dan H and Barouch, Dan H
Nature, November 18, 2021. | Journal Article
 
TopMSV: A Web-Based Tool for Top-Down Mass Spectrometry Data Visualization.
Choi, In Kwon⋅Jiang, Tianze⋅Kankara, Sreekanth Reddy⋅Wu, Si and Liu, Xiaowen
Journal of the American Society for Mass Spectrometry, March 29, 2021. | Journal Article
2020
Development of an Online 2D Ultrahigh-Pressure Nano-LC System for High-pH and Low-pH Reversed Phase Separation in Top-Down Proteomics.
Wang, Zhe⋅Yu, Dahang⋅Cupp-Sutton, Kellye A⋅Liu, Xiaowen⋅Smith, Kenneth and Wu, Si
Analytical chemistry. | Journal Article
 
EnvCNN: A Convolutional Neural Network Model for Evaluating Isotopic Envelopes in Top-Down Mass-Spectral Deconvolution.
Analytical chemistry. | Journal Article
 
MASH Explorer: A Universal Software Environment for Top-Down Proteomics.
Wu, Zhijie⋅Roberts, David S⋅Melby, Jake A⋅Wenger, Kent⋅Wetzel, Molly⋅Gu, Yiwen⋅Ramanathan, Sudharshanan Govindaraj⋅Bayne, Elizabeth F⋅Liu, Xiaowen⋅Sun, Ruixiang⋅Ong, Irene M⋅McIlwain, Sean J and Ge, Ying
Journal of proteome research. | Journal Article
 
pH-Sensitive Biomaterials for Drug Delivery.
Zhuo, Shijie⋅Zhang, Feng⋅Yu, Junyu⋅Zhang, Xican⋅Yang, Guangbao and Liu, Xiaowen
Molecules (Basel, Switzerland), vol. 25, (no. 23), November 30, 2020. | Journal Article
 
Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry.
Journal of proteome research. | Journal Article
 
TopPIC Gateway: A Web Gateway for Top-Down Mass Spectrometry Data Interpretation
Choi, In Kwon⋅Abeysinghe, Eroma⋅Coulter, Eric⋅Marru, Suresh⋅Pierce, Marlon and Liu, Xiaowen
ACM. | Conference Proceeding
2019
A Markov Chain Monte Carlo Method for Estimating the Statistical Significance of Proteoform Identifications by Top-Down Mass Spectrometry
Kou, Qiang⋅Wang, Zhe⋅Lubeckyj, Rachele A⋅Wu, Si⋅Sun, Liangliang and Liu, Xiaowen
Journal of proteome research, vol. 18, (no. 3), pp. 889, 2019-03-01. | Journal Article
 
Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics
McCool, Elijah N⋅Lodge, Jean M⋅Liu, Xiaowen⋅Coon, Joshua J and Sun, Liangliang
Journal of the American Society for Mass Spectrometry, vol. 30, (no. 12), pp. 2470-2479, 2019. | Journal Article
 
Correlation Analysis of Histopathology and Proteogenomics Data for Breast Cancer
Zhan, Xiaohui⋅Zhan, Xiaohui⋅Cheng, Jun⋅Cheng, Jun⋅Huang, Zhi⋅Huang, Zhi⋅Han, Zhi⋅Han, Zhi⋅Helm, Bryan⋅Helm, Bryan⋅Liu, Xiaowen⋅Liu, Xiaowen⋅Zhang, Jie⋅Zhang, Jie⋅Wang, Tian-Fu⋅Wang, Tian-Fu⋅Ni, Dong⋅Ni, Dong⋅Huang, Kun and Huang, Kun
Molecular & cellular proteomics : MCP, vol. 18, (no. 8 suppl 1), pp. S51, 2019-08-09. | Journal Article
 
Deep Intact Proteoform Characterization in Human Cell Lysate Using High-pH and Low-pH Reversed-Phase Liquid Chromatography.
Yu, Dahang⋅Wang, Zhe⋅Cupp-Sutton, Kellye A⋅Liu, Xiaowen and Wu, Si
Journal of the American Society for Mass Spectrometry. | Journal Article
 
Graft-Versus-Host Disease-Free Antitumoral Signature After Allogeneic Donor Lymphocyte Injection Identified by Proteomics and Systems Biology.
Liu, Xiaowen⋅Liu, Xiaowen⋅Liu, X.⋅Yue, Zongliang⋅Yue, Z.⋅Yue, Zongliang⋅Cao, Y.⋅Cao, Yimou⋅Cao, Yimou⋅Taylor, Lauren⋅Taylor, Lauren⋅Taylor, L.⋅Zhang, Q.⋅Zhang, Qing⋅Zhang, Qing⋅Choi, Sung W⋅Choi, Sung W⋅Choi, S.W.⋅Hanash, Samir⋅Hanash, Samir⋅Hanash, S.⋅Ito, Sawa⋅Ito, Sawa⋅Ito, S.⋅Chen, J.Y.⋅Chen, Jake Y⋅Chen, Jake Y⋅Wu, Huanmei⋅Wu, H.⋅Wu, Huanmei⋅Paczesny, S.⋅Paczesny, Sophie and Paczesny, Sophie
JCO precision oncology. | Journal Article
 
Identification and Quantification of Proteoforms by Mass Spectrometry
Schaffer, Leah V⋅Schaffer, Leah V⋅Millikin, Robert J⋅Millikin, Robert J⋅Miller, Rachel M⋅Miller, Rachel M⋅Anderson, Lissa C⋅Anderson, Lissa C⋅Fellers, Ryan T⋅Fellers, Ryan T⋅Ge, Ying⋅Ge, Ying⋅Kelleher, Neil L⋅Kelleher, Neil L⋅LeDuc, Richard D⋅LeDuc, Richard D⋅Liu, Xiaowen⋅Liu, Xiaowen⋅Payne, Samuel H⋅Payne, Samuel H⋅Sun, Liangliang⋅Sun, Liangliang⋅Thomas, Paul M⋅Thomas, Paul M⋅Tucholski, Trisha⋅Tucholski, Trisha⋅Wang, Zhe⋅Wang, Zhe⋅Wu, Si⋅Wu, Si⋅Wu, Zhijie⋅Wu, Zhijie⋅Yu, Dahang⋅Yu, Dahang⋅Shortreed, Michael R⋅Shortreed, Michael R⋅Smith, Lloyd M and Smith, Lloyd M
PROTEOMICS, vol. 19, (no. 10), pp. n/a, May 2019. | Journal Article
 
Large-Scale Qualitative and Quantitative Top-Down Proteomics Using Capillary Zone Electrophoresis-Electrospray Ionization-Tandem Mass Spectrometry with Nanograms of Proteome Samples
Lubeckyj, Rachele⋅Basharat, Abdul⋅Shen, Xiaojing⋅Liu, Xiaowen and Sun, Liangliang
Journal of The American Society for Mass Spectrometry, vol. 30, (no. 8), pp. 1445, 20190815. | Journal Article
 
The Longest Common Exemplar Subsequence Problem
Zhang, S.⋅Wang, R.⋅Zhu, D.⋅Jiang, H.⋅Feng, H.⋅Guo, J. and Liu, X.
Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018, pp. 92-95. | Conference Proceeding
 
Top-down Mass Spectrometry Analysis of Human Serum Autoantibody Antigen-Binding Fragments
Wang, Zhe⋅Liu, Xiaowen⋅Muther, Jennifer⋅James, Judith A⋅Smith, Kenneth and Wu, Si
Scientific reports, vol. 9, (no. 1), pp. 2345, 2019-02-20. | Journal Article
2018
A graph-based approach for proteoform identification and quantification using top-down homogeneous multiplexed tandem mass spectra
Zhu, Kaiyuan and Liu, Xiaowen
BMC bioinformatics, vol. 19, (no. Suppl 9), pp. 280, 2018-Aug-13. | Journal Article
 
Deep Top-Down Proteomics Using Capillary Zone Electrophoresis-Tandem Mass Spectrometry: Identification of 5700 Proteoforms from the Escherichia coli Proteome
McCool, Elijah N⋅Lubeckyj, Rachele A⋅Shen, Xiaojing⋅Chen, Daoyang⋅Kou, Qiang⋅Liu, Xiaowen and Sun, Liangliang
Analytical Chemistry, vol. 90, (no. 9), pp. 5533, 20180501. | Journal Article
 
Evaluation of top-down mass spectral identification with homologous protein sequences
Li, Ziwei⋅Li, Ziwei⋅He, Bo⋅He, Bo⋅Kou, Qiang⋅Kou, Qiang⋅Wang, Zhe⋅Wang, Zhe⋅Wu, Si⋅Wu, Si⋅Liu, Yunlong⋅Liu, Yunlong⋅Feng, Weixing⋅Feng, Weixing⋅Liu, Xiaowen and Liu, Xiaowen
BMC bioinformatics, vol. 19, (no. Suppl 17), pp. 494, 2018-Dec-28. | Journal Article
 
Large-scale Top-down Proteomics Using Capillary Zone Electrophoresis Tandem Mass Spectrometry
McCool, Elijah N⋅Lubeckyj, Rachele⋅Shen, Xiaojing⋅Kou, Qiang⋅Liu, Xiaowen and Sun, Liangliang
Journal of Visualized Experiments, (no. 140), 10-2018. | Journal Article
 
Native Proteomics in Discovery Mode Using Size-Exclusion Chromatography–Capillary Zone Electrophoresis–Tandem Mass Spectrometry
Shen, Xiaojing⋅Kou, Qiang⋅Guo, Ruiqiong⋅Yang, Zhichang⋅Chen, Daoyang⋅Liu, Xiaowen⋅Hong, Heedeok and Sun, Liangliang
Analytical Chemistry, vol. 90, (no. 17), pp. 10099, 20180904. | Journal Article
 
Systematic Evaluation of Protein Sequence Filtering Algorithms for Proteoform Identification Using Top‐Down Mass Spectrometry
Kou, Qiang⋅Wu, Si and Liu, Xiaowen
PROTEOMICS, vol. 18, (no. 3-4), pp. n/a, February 2018. | Journal Article
2017
A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra.
Kou, Qiang⋅Kou, Qiang⋅Wu, Si⋅Wu, Si⋅Tolic, Nikola⋅Tolic, Nikola⋅Paša-Tolic, Ljiljana⋅Paša-Tolic, Ljiljana⋅Liu, Yunlong⋅Liu, Yunlong⋅Liu, Xiaowen and Liu, Xiaowen
Bioinformatics (Oxford, England), vol. 33, (no. 9), pp. 1309-1316, May 1, 2017. | Journal Article