74 Publications (Page 2 of 3)
2018
Large-scale Top-down Proteomics Using Capillary Zone Electrophoresis Tandem Mass Spectrometry
McCool, Elijah NLubeckyj, RacheleShen, XiaojingKou, QiangLiu, Xiaowen and Sun, Liangliang
Journal of Visualized Experiments, (no. 140), 10-2018. | Journal Article
 
Native Proteomics in Discovery Mode Using Size-Exclusion Chromatography–Capillary Zone Electrophoresis–Tandem Mass Spectrometry
Shen, XiaojingKou, QiangGuo, RuiqiongYang, ZhichangChen, DaoyangLiu, XiaowenHong, Heedeok and Sun, Liangliang
Analytical Chemistry, vol. 90, (no. 17), pp. 10099, 20180904. | Journal Article
 
Systematic Evaluation of Protein Sequence Filtering Algorithms for Proteoform Identification Using Top‐Down Mass Spectrometry
Kou, QiangWu, Si and Liu, Xiaowen
PROTEOMICS, vol. 18, (no. 3-4), pp. n/a, February 2018. | Journal Article
2017
A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra.
Kou, QiangKou, QiangWu, SiWu, SiTolic, NikolaTolic, NikolaPaša-Tolic, LjiljanaPaša-Tolic, LjiljanaLiu, YunlongLiu, YunlongLiu, Xiaowen and Liu, Xiaowen
Bioinformatics (Oxford, England), vol. 33, (no. 9), pp. 1309-1316, May 1, 2017. | Journal Article
 
A spectrum graph-based protein sequence filtering algorithm for proteoform identification by top-down mass spectrometry
Yang, RunminYang, RunminZhu, DamingZhu, DamingKou, QiangKou, QiangBhat-Nakshatri, PoornimaBhat-Nakshatri, PoornimaNakshatri, HarikrishnaNakshatri, HarikrishnaWu, SiWu, SiLiu, Xiaowen and Liu, Xiaowen
2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), vol. 2017, pp. 229, 2017-Nov.. | Journal Article
 
De Novo Sequencing of Peptides from High‐Resolution Bottom‐Up Tandem Mass Spectra using Top‐Down Intended Methods
Vyatkina, KiraDekker, Lennard J. MWu, SiVanDuijn, Martijn MLiu, XiaowenTolić, NikolaLuider, Theo M and Paša‐Tolić, Ljiljana
PROTEOMICS, vol. 17, (no. 23-24), pp. n/a, December 2017. | Journal Article
 
Filling a Protein Scaffold With a Reference.
Qingge, LetuLiu, XiaowenZhong, Farong and Zhu, Binhai
IEEE transactions on nanobioscience, vol. 16, (no. 2), pp. 123-130, March 2017. | Journal Article
 
Single-Shot Top-Down Proteomics with Capillary Zone Electrophoresis-Electrospray Ionization-Tandem Mass Spectrometry for Identification of Nearly 600 Escherichia coli Proteoforms
Lubeckyj, Rachele AMcCool, Elijah NShen, XiaojingKou, QiangLiu, Xiaowen and Sun, Liangliang
Analytical Chemistry, vol. 89, (no. 22), pp. 12067, 20171121. | Journal Article
 
Top-down analysis of immunoglobulin G isotypes 1 and 2 with electron transfer dissociation on a high-field orbitrap mass spectrometer.
Fornelli, LucaAyoub, DanielAizikov, KonstantinLiu, XiaowenDamoc, EugenPevzner, Pavel AMakarov, AlexanderBeck, Alain and Tsybin, Yury O
Journal of proteomics, February 24, 2017. | Journal Article
2016
A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra.
Kou, QiangKou, QiangWu, SiWu, SiTolić, NikolaTolić, NikolaPaša-Tolić, LjiljanaPaša-Tolić, LjiljanaLiu, YunlongLiu, YunlongLiu, Xiaowen and Liu, Xiaowen
Bioinformatics (Oxford, England), December 21, 2016. | Journal Article
 
Characterization of Proteoforms with Unknown Post-translational Modifications Using the MIScore.
Kou, QiangZhu, BinhaiWu, SiAnsong, CharlesTolić, NikolaPaša-Tolić, Ljiljana and Liu, Xiaowen
Journal of proteome research, vol. 15, (no. 8), pp. 2422-2432, August 5, 2016. | Journal Article
 
Filling a protein scaffold with a reference
Qingge, L.Liu, X.Zhong, F. and Zhu, B.
2016
 
MASH Suite Pro: A Comprehensive Software Tool for Top-Down Proteomics.
Cai, WenxuanGuner, HuseyinGregorich, Zachery RChen, Albert JAyaz-Guner, SerifePeng, YingValeja, Santosh GLiu, Xiaowen and Ge, Ying
Molecular & cellular proteomics : MCP, vol. 15, (no. 2), pp. 703-714, February 2016. | Journal Article
 
Mass graphs and their applications in top-down proteomics
Kou, Q.Wu, S.Toli?, N.Liu, Y.Pa?a-Toli?, L. and Liu, X.
2016
 
Proteomic Characterization Reveals That MMP-3 Correlates With Bronchiolitis Obliterans Syndrome Following Allogeneic Hematopoietic Cell and Lung Transplantation.
Liu, XYue, ZYu, JDaguindau, EKushekhar, KZhang, QOgata, YGafken, P RInamoto, YGracon, AWilkes, D SHansen, J ALee, S JChen, J Y and Paczesny, S
American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons, vol. 16, (no. 8), pp. 2342-2351, August 2016. | Journal Article
 
SpectroGene: A Tool for Proteogenomic Annotations Using Top-Down Spectra.
Kolmogorov, MikhailLiu, Xiaowen and Pevzner, Pavel A
Journal of proteome research, vol. 15, (no. 1), pp. 144-151, January 4, 2016. | Journal Article
 
Top-down analysis of protein samples by de novo sequencing techniques.
Vyatkina, KiraWu, SiDekker, Lennard J MVanDuijn, Martijn MLiu, XiaowenTolić, NikolaLuider, Theo MPaša-Tolić, Ljiljana and Pevzner, Pavel A
Bioinformatics (Oxford, England), vol. 32, (no. 18), pp. 2753-2759, September 15, 2016. | Journal Article
 
TopPIC: A software tool for top-down mass spectrometry-based proteoform identification and characterization.
Kou, QiangXun, Likun and Liu, Xiaowen
Bioinformatics (Oxford, England), July 16, 2016. | Journal Article
2015
An efficient algorithm for the blocked pattern matching problem.
Deng, FeiWang, Lusheng and Liu, Xiaowen
Bioinformatics (Oxford, England), vol. 31, (no. 4), pp. 532-538, February 15, 2015. | Journal Article
 
De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra.
Vyatkina, KiraWu, SiDekker, Lennard J MVanDuijn, Martijn MLiu, XiaowenTolić, NikolaDvorkin, MikhailAlexandrova, SonyaLuider, Theo MPaša-Tolić, Ljiljana and Pevzner, Pavel A
Journal of proteome research, vol. 14, (no. 11), pp. 4450-4462, November 6, 2015. | Journal Article
 
Identification of Glycopeptides with Multiple Hydroxylysine O-Glycosylation Sites by Tandem Mass Spectrometry.
Zhang, YanlinZhang, YanlinYu, Chuan-YihYu, Chuan-YihSong, EhwangSong, EhwangLi, Shuai ChengLi, Shuai ChengMechref, YehiaMechref, YehiaTang, HaixuTang, HaixuLiu, Xiaowen and Liu, Xiaowen
Journal of proteome research, vol. 14, (no. 12), pp. 5099-5108, December 4, 2015. | Journal Article
2014
A new scoring function for top-down spectral deconvolution
Kou, QiangWu, Si and Liu, Xiaowen
BMC Genomics, vol. 15, 2014. | Journal Article
 
De novo protein sequencing by combining top-down and bottom-up tandem mass spectra.
Liu, XiaowenDekker, Lennard J MWu, SiVanduijn, Martijn MLuider, Theo MTolić, NikolaKou, QiangDvorkin, MikhailAlexandrova, SonyaVyatkina, KiraPaša-Tolić, Ljiljana and Pevzner, Pavel A
Journal of proteome research, vol. 13, (no. 7), pp. 3241-3248, July 3, 2014. | Journal Article
 
Improving protein order-disorder classification using charge-hydropathy plots
Huang, FeiOldfield, ChristopherXue, BinHsu, Wei-LunMeng, JingweiLiu, XiaowenShen, LiRomero, PedroUversky, Vladimir and Dunker, A
BMC Bioinformatics , vol. 15, 2014. | Journal Article
 
Quantitative analysis of human salivary gland‐derived intact proteome using top‐down mass spectrometry
Wu, SiWu, SiBrown, Joseph NBrown, Joseph NTolić, NikolaTolić, NikolaMeng, DaMeng, DaLiu, XiaowenLiu, XiaowenZhang, HaizhenZhang, HaizhenZhao, RuiZhao, RuiMoore, Ronald JMoore, Ronald JPevzner, PavelPevzner, PavelSmith, Richard DSmith, Richard DPaša‐Tolić, Ljiljana and Paša-Tolić, Ljiljana
PROTEOMICS, vol. 14, (no. 10), pp. 1222, May 2014. | Journal Article