74 Publications (Page 3 of 3)
2014
Spectral probabilities of top-down tandem mass spectra
Liu, XiaowenSegar, MatthewLi, Shuai Cheng and Kim, Sangtae
BMC Genomics, vol. 15, 2014. | Journal Article
 
Top-down proteomics reveals concerted reductions in myofilament and Z-disc protein phosphorylation after acute myocardial infarction.
Peng, YingGregorich, Zachery RValeja, Santosh GZhang, HanCai, WenxuanChen, Yi-ChenGuner, HuseyinChen, Albert JSchwahn, Denise JHacker, Timothy ALiu, Xiaowen and Ge, Ying
Molecular & cellular proteomics : MCP, vol. 13, (no. 10), pp. 2752-2764, October 2014. | Journal Article
2013
Identification of ultramodified proteins using top-down spectra
Liu, X.Hengel, S.Wu, S.Toli?, N.Pasa-Toli?, L. and Pevzner, P.A.
2013
 
Identification of ultramodified proteins using top-down tandem mass spectra.
Liu, XiaowenLiu, XiaowenHengel, ShawnaHengel, ShawnaWu, SiWu, SiTolić, NikolaTolić, NikolaPasa-Tolić, LjiljanaPasa-Tolić, LjiljanaPevzner, Pavel A and Pevzner, Pavel A
Journal of proteome research, vol. 12, (no. 12), pp. 5830-8, 2013/Dec/6. | Journal Article
 
Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions.
Ansong, CharlesAnsong, CharlesWu, SiWu, SiMeng, DaMeng, DaLiu, XiaowenLiu, XiaowenBrewer, Heather MBrewer, Heather MDeatherage Kaiser, Brooke LDeatherage Kaiser, Brooke LNakayasu, Ernesto SNakayasu, Ernesto SCort, John RCort, John RPevzner, PavelPevzner, PavelSmith, Richard DSmith, Richard DHeffron, FredHeffron, FredAdkins, Joshua NAdkins, Joshua NPasa-Tolic, Ljiljana and Pasa-Tolic, Ljiljana
Proceedings of the National Academy of Sciences of the United States of America, vol. 110, (no. 25), pp. 10153-8, 2013/Jun/18. | Journal Article
2012
Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery
Ibrahim, AshrafYang, LianJohnston, ChadLiu, XiaowenMa, Bin and Magarvey, Nathan A
Proceedings of the National Academy of Sciences of the United States of America, vol. 109, (no. 47), Nov 20, 2012. | Journal Article
 
Protein identification using top-down.
Liu, XiaowenSirotkin, YakovShen, YufengAnderson, Gordon ATsai, Yihsuan STing, Ying SGoodlett, David RSmith, Richard DBafna, Vineet and Pevzner, Pavel A
Molecular & cellular proteomics : MCP, vol. 11, (no. 6), pp. M111.008524, 2012/Jun. | Journal Article
 
Speeding up tandem mass spectral identification using indexes.
Liu, XiaowenMammana, Alessandro and Bafna, Vineet
Bioinformatics (Oxford, England), vol. 28, (no. 13), pp. 1692-7, 2012/Jul/1. | Journal Article
2010
Better score function for peptide identification with ETD MS/MS spectra
Liu, XiaowenShan, BaozhenXin, Lei and Ma, Bin
BMC Bioinformatics, vol. 11, (no. Suppl 1), pp. S4, 2010. | Journal Article
 
Better score function for peptide identification with ETD MS/MS spectra.
Liu, XiaowenShan, BaozhenXin, Lei and Ma, Bin
BMC bioinformatics, vol. 11 Suppl 1, pp. S4, 2010. | Journal Article
 
Deconvolution and database search of complex tandem mass spectra of intact proteins: a combinatorial approach.
Liu, XiaowenInbar, YuvalDorrestein, Pieter CWynne, ColinEdwards, NathanSouda, PuneetWhitelegge, JulianBafna, Vineet and Pevzner, Pavel A
Molecular & cellular proteomics : MCP, vol. 9, (no. 12), pp. 2772-82, 2010/Dec. | Journal Article
 
Modeling protein interacting groups by quasi-bicliques: complexity, algorithm, and application.
Liu, XiaowenLi, Jinyan and Wang, Lusheng
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, vol. 7, (no. 2), pp. 354-64, 2010 Apr-Jun. | Journal Article
2009
Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy
Liu, XiaowenHan, YonghuaYuen, Denis and Ma, Bin
Bioinformatics, vol. 25, (no. 17), pp. 2174-2180, 2009. | Journal Article
2008
A (1.5 + epsilon)-approximation algorithm for unsigned translocation distance.
Cui, YunWang, LushengZhu, Daming and Liu, Xiaowen
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, vol. 5, (no. 1), pp. 56-66, 2008 Jan-Mar. | Journal Article
 
A (1.5 + Im)-Approximation Algorithm for Unsigned Translocation Distance
Cui, YunWang, LushengZhu, Darning and Liu, Xiaowen
IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 5, (no. 1), pp. 56-66, 2008. | Journal Article
 
An Efficient Voting Algorithm for Finding Additive Biclusters with Random Background
Xiao, J.Wang, LushengLiu, Xiaowen and Jiang, Tao
Journal of Computational Biology, vol. 15, (no. 10), pp. 1275-1293, 2008. | Journal Article
 
Approximation algorithms for biclustering problems
Wang, L.Lin, Y. and Liu, X.
SIAM Journal on Computing, vol. 38, pp. 1504-1518. | Journal Article
 
Finding additive biclusters with random background
Xiao, J.Wang, L.Liu, X. and Jiang, T.
2008
 
Quasi-bicliques: Complexity and binding pairs
Liu, X.Li, J. and Wang, L.
2008
 
Voting algorithms for the motif finding problem.
Liu, XiaowenMa, Bin and Wang, Lusheng
Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, vol. 7, pp. 37-47, 2008. | Journal Article
2007
Computing the maximum similarity bi-clusters of gene expression data
Liu, Xiaowen and Wang, Lusheng
Bioinformatics, vol. 23, (no. 1), pp. 50, Jan 1, 2007. | Journal Article
2006
Approximation algorithms for Bi-clustering problems
Wang, L.Lin, Y. and Liu, X.
2006
 
Finding the region of pseudo-periodic tandem repeats in biological sequences
Liu, Xiaowen and Wang, Lusheng
Algorithms for Molecular Biology, vol. 1, 2006. | Journal Article
 
Finding the region of pseudo-periodic tandem repeats in biological sequences.
Liu, Xiaowen and Wang, Lusheng
Algorithms for molecular biology : AMB, vol. 1, (no. 1), pp. 2, 2006. | Journal Article