138 Publications (Page 2 of 6)
2019
Long Non-Coding RNA Expression Levels Modulate Cell-Type Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins
Porto, Felipe WendtDaulatabad, Swapna Vidhur and Janga, Sarath Chandra
MDPI AG
 
Long Non-Coding RNA Expression Levels Modulate Cell-Type-Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins
Porto, Felipe WendtDaulatabad, Swapna Vidhur and Janga, Sarath Chandra
Genes, vol. 10, (no. 8), pp. 593, 2019-08-06. | Journal Article
 
Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data
Eller, Ryan JEller, Ryan JEller, Ryan J.Janga, Sarath CJanga, Sarath C.Janga, Sarath CWalsh, SusanWalsh, Susan and Walsh, Susan
BMC bioinformatics, vol. 20, (no. 1), pp. 364, 2019-Jun-28. | Journal Article
 
Sequoia: An interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets
Koonchanok, RatanondDaulatabad, Swapna VidhurMir, QuoseenaReda, Khairi and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
SliceIt: A genome-wide resource and visualization tool to design CRISPR/Cas9 screens for editing protein-RNA interaction sites in the human genome
Vemuri, SasankSrivastava, RajneeshMir, QuoseenaHashemikhabir, SeyedsasanDong, X. Charlie and Janga, Sarath Chandra
Methods, 2019-Sep-05. | Journal Article
 
Splicing factor ESRP1 controls ER‐positive breast cancer by altering metabolic pathways
Gökmen‐Polar, YesimGökmen‐Polar, YesimNeelamraju, YaseswiniNeelamraju, YaseswiniGoswami, Chirayu PGoswami, Chirayu PGu, YuanGu, YuanGu, XiaopingGu, XiaopingNallamothu, GouthamiNallamothu, GouthamiVieth, EdytaVieth, EdytaJanga, Sarath CJanga, Sarath CRyan, MichaelRyan, MichaelBadve, Sunil S and Badve, Sunil S
EMBO reports, vol. 20, (no. 2), pp. n/a, February 2019. | Journal Article
2018
A conserved enhancer regulates Il9 expression in multiple lineages.
Koh, ByungheeAbdul Qayum, AminaSrivastava, RajneeshFu, YongyaoUlrich, Benjamin JJanga, Sarath Chandra and Kaplan, Mark H
Nature communications, vol. 9, (no. 1), pp. 4803, November 15, 2018. | Journal Article
 
A Framework for Identifying Genotypic Information from Clinical Records
Hashemikhabir, SeyedsasanXia, RanXiang, Yang and Janga, Sarath
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), vol. 15, (no. 4), pp. 1269, 07-01-2018. | Journal Article
 
Epitranscriptomic Code and Its Alterations in Human Disease.
Kadumuri, Rajashekar Varma and Janga, Sarath Chandra
Trends in molecular medicine, August 14, 2018. | Journal Article
 
Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues.
Budak, GungorDash, SomaSrivastava, RajneeshLachke, Salil A and Janga, Sarath Chandra
Experimental eye research, vol. 168, pp. 57-68, January 11, 2018. | Journal Article
 
Great Lakes Bioinformatics Conference GLBIO 2015 Special Section Editorial
Milenkovic, Tijana and Janga, Sarath
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), vol. 15, (no. 4), pp. 1230, 07-01-2018. | Journal Article
 
Loss of epigenetic regulator TET2 and oncogenic KIT regulate myeloid cell transformation via PI3K pathway
Palam, Lakshmi ReddyPalam, Lakshmi ReddyPalam, Lakshmi ReddyPalam, Lakshmi ReddyPalam, Lakshmi ReddyMali, Raghuveer SinghMali, Raghuveer SinghMali, Raghuveer SinghMali, Raghuveer SinghMali, Raghuveer SinghRamdas, BaskarRamdas, BaskarRamdas, BaskarRamdas, BaskarRamdas, BaskarSrivatsan, Sridhar NonavinkereSrivatsan, Sridhar NonavinkereSrivatsan, Sridhar NonavinkereSrivatsan, Sridhar NonavinkereSrivatsan, Sridhar NonavinkereVisconte, ValeriaVisconte, ValeriaVisconte, ValeriaVisconte, ValeriaVisconte, ValeriaTiu, Ramon VTiu, Ramon VTiu, Ramon VTiu, Ramon VTiu, Ramon VVanhaesebroeck, BartVanhaesebroeck, BartVanhaesebroeck, BartVanhaesebroeck, BartVanhaesebroeck, BartRoers, AxelRoers, AxelRoers, AxelRoers, AxelRoers, AxelGerbaulet, AlexanderGerbaulet, AlexanderGerbaulet, AlexanderGerbaulet, AlexanderGerbaulet, AlexanderXu, MingjiangXu, MingjiangXu, MingjiangXu, MingjiangXu, MingjiangJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraTakemoto, Clifford MTakemoto, Clifford MTakemoto, Clifford MTakemoto, Clifford MTakemoto, Clifford MPaczesny, SophiePaczesny, SophiePaczesny, SophiePaczesny, SophiePaczesny, SophieKapur, ReubenKapur, ReubenKapur, ReubenKapur, Reuben and Kapur, Reuben
JCI insight, vol. 3, (no. 4), 2018-02-22. | Journal Article
 
Temporal and Spatially Regulated Oncogenic KIT Expression and Loss of Dnmt3a Cooperate to Drive MPN Development: Role of PI3Kinase in Dnmt3a Loss Induced Hyperproliferation in Myeloid Cells
Palam, Lakshmi ReddyPalam, Lakshmi ReddyPalam, Lakshmi ReddyPalam, Lakshmi ReddyRamdas, BaskarRamdas, BaskarRamdas, BaskarRamdas, BaskarSrivatsan, Sridhar reddySrivatsan, Sridhar reddySrivatsan, Sridhar reddySrivatsan, Sridhar reddyJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraRoers, AxelRoers, AxelRoers, AxelRoers, AxelGerbaulet, AlexanderGerbaulet, AlexanderGerbaulet, AlexanderGerbaulet, AlexanderKapur, ReubenKapur, ReubenKapur, Reuben and Kapur, Reuben
Blood, vol. 132, (no. Supplement 1), pp. 3055, 2018-11-29. | Journal Article
2017
Community-acquired rhinovirus infection is associated with changes in the airway microbiome
Kloepfer, KirstenKloepfer, KirstenSarsani, Vishal K., MSSarsani, VishalPoroyko, ValeriyPoroyko, Valeriy, PhDLee, Wai Ming, PhDLee, WaiPappas, TressaPappas, TressaKang, TheresaKang, TheresaGrindle, KristineGrindle, KristineBochkov, YuryBochkov, Yury A., PhDJanga, SarathJanga, Sarath Chandra, PhDLemanske, RobertLemanske, Robert F., MDGern, James E., MD and Gern, James
Journal of Allergy and Clinical Immunology, vol. 140, (no. 1), pp. 312-315, Jul 1, 2017. | Journal Article
 
Differential Expression of miRNAs in Nontumor Liver Tissue of Patients With Hepatocellular Cancer Caused by Nonalcoholic Steatohepatitis Cirrhosis
Liang, TiebingLiang, TiebingLiang, TiebingLiang, TiebingChalasani, Naga PChalasani, Naga PChalasani, Naga PChalasani, Naga PWilliams, Kent EdwardWilliams, Kent EdwardWilliams, Kent EdwardWilliams, Kent EdwardSarasani, VishalSarasani, VishalSarasani, VishalSarasani, VishalJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraVuppalanchi, RajVuppalanchi, RajVuppalanchi, Raj and Vuppalanchi, Raj
Clinical Gastroenterology and Hepatology, vol. 15, (no. 3), pp. 467, March 2017. | Journal Article
 
Molecular typing of canine parvovirus from sulaimani, Iraq and phylogenetic analysis using partial VP2 gene
Baba Sheikh, M.O.Rashid, P.M.A.Marouf, A.S.Raheem, Z.H.Manjunath, S. and Janga, S.C.
Bulgarian Journal of Veterinary Medicine, vol. 20, pp. 225-235. | Journal Article
 
Mutational landscape of RNA-binding proteins in human cancers.
Neelamraju, YaseswiniNeelamraju, YaseswiniGonzalez-Perez, AbelGonzalez-Perez, AbelBhat-Nakshatri, PoornimaBhat-Nakshatri, PoornimaNakshatri, HarikrishnaNakshatri, HarikrishnaJanga, Sarath Chandra and Janga, Sarath Chandra
RNA biology, pp. 1-15, October 12, 2017. | Journal Article
 
Paracrine IL-2 Is Required for Optimal Type 2 Effector Cytokine Production.
Olson, Matthew ROlson, Matthew ROlson, Matthew ROlson, Matthew RUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JHummel, Sarah AHummel, Sarah AHummel, Sarah AHummel, Sarah AKhan, IbrahimKhan, IbrahimKhan, IbrahimKhan, IbrahimMeuris, BriceMeuris, BriceMeuris, BriceMeuris, BriceCherukuri, YesesriCherukuri, YesesriCherukuri, YesesriCherukuri, YesesriDent, Alexander LDent, Alexander LDent, Alexander LDent, Alexander LJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraKaplan, Mark HKaplan, Mark HKaplan, Mark H and Kaplan, Mark H
Journal of immunology (Baltimore, Md. : 1950), May 3, 2017. | Journal Article
 
Phylogenic analysis of serotype Asia1 foot-and-mouth disease virus from Sulaimani/Iraq using VP1 protein: Heterogeneity with vaccine strain As1/Shamir/89
Baba Sheikh, M.O.Rashid, P.M.A.Marouf, A.S.Raheem, Z.H. and Janga, S.C.
Iranian Journal of Veterinary Research, vol. 18, pp. 212-215. | Journal Article
 
PSIP1/p75 promotes tumorigenicity in breast cancer cells by promoting the transcription of cell cycle genes.
Singh, Deepak KGholamalamdari, OmidJadaliha, MahdiehLing Li, XiaoLin, Yo-ChuenZhang, YangGuang, ShuomengHashemikhabir, SeyedsasanTiwari, SaumyaZhu, Yuelin JKhan, AbidThomas, AnuChakraborty, ArindamMacias, VirgiliaBalla, Andre KBhargava, RohitJanga, Sarath ChandraMa, JianPrasanth, Supriya GLal, Ashish and Prasanth, Kannanganattu V
Carcinogenesis, June 17, 2017. | Journal Article
 
RNA Editing in Pathogenesis of Cancer.
Baysal, Bora ESharma, ShraddhaHashemikhabir, Seyedsasan and Janga, Sarath Chandra
Cancer research, June 30, 2017. | Journal Article
 
Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Budak, GungorSrivastava, Rajneesh and Janga, Sarath Chandra
RNA (New York, N.Y.), vol. 23, (no. 6), pp. 836-846, June 2017. | Journal Article
 
Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations
Srivastava, RajneeshBudak, GungorDash, SomaLachke, Salil A and Janga, Sarath Chandra
Scientific reports, vol. 7, (no. 1), pp. 17, 2017-09-14. | Journal Article
2016
Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
Cherukuri, Yesesri and Janga, Sarath Chandra
BMC genomics, vol. 17, pp. 507. | Journal Article
 
Comparative and temporal transcriptome analysis of peste des petits ruminants virus infected goat peripheral blood mononuclear cells.
Manjunath, SiddappaMishra, Bishnu PrasadMishra, BinaSahoo, Aditya PrasadTiwari, Ashok KRajak, Kaushal KishoreMuthuchelvan, DSaxena, ShikhaSantra, LakshmanSahu, Amit RanjanWani, Sajad AhmadSingh, R PSingh, Y PPandey, ArunaKanchan, SonamSingh, R KKumar, Gandham Ravi and Janga, Sarath Chandra
Virus research, December 22, 2016. | Journal Article