138 Publications (Page 2 of 6)
2019
Long Non-Coding RNA Expression Levels Modulate Cell-Type Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding ProteinsPorto, Felipe Wendt⋅Daulatabad, Swapna Vidhur and Janga, Sarath ChandraMDPI AG
Long Non-Coding RNA Expression Levels Modulate Cell-Type-Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding ProteinsPorto, Felipe Wendt⋅Daulatabad, Swapna Vidhur and Janga, Sarath ChandraGenes, vol. 10, (no. 8), pp. 593, 2019-08-06.
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Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic dataEller, Ryan J⋅Eller, Ryan J⋅Eller, Ryan J.⋅Janga, Sarath C⋅Janga, Sarath C.⋅Janga, Sarath C⋅Walsh, Susan⋅Walsh, Susan and Walsh, SusanBMC bioinformatics, vol. 20, (no. 1), pp. 364, 2019-Jun-28.
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Sequoia: An interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasetsKoonchanok, Ratanond⋅Daulatabad, Swapna Vidhur⋅Mir, Quoseena⋅Reda, Khairi and Janga, Sarath ChandraCold Spring Harbor Laboratory
SliceIt: A genome-wide resource and visualization tool to design CRISPR/Cas9 screens for editing protein-RNA interaction sites in the human genomeVemuri, Sasank⋅Srivastava, Rajneesh⋅Mir, Quoseena⋅Hashemikhabir, Seyedsasan⋅Dong, X. Charlie and Janga, Sarath ChandraMethods, 2019-Sep-05.
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Splicing factor ESRP1 controls ER‐positive breast cancer by altering metabolic pathwaysGökmen‐Polar, Yesim⋅Gökmen‐Polar, Yesim⋅Neelamraju, Yaseswini⋅Neelamraju, Yaseswini⋅Goswami, Chirayu P⋅Goswami, Chirayu P⋅Gu, Yuan⋅Gu, Yuan⋅Gu, Xiaoping⋅Gu, Xiaoping⋅Nallamothu, Gouthami⋅Nallamothu, Gouthami⋅Vieth, Edyta⋅Vieth, Edyta⋅Janga, Sarath C⋅Janga, Sarath C⋅Ryan, Michael⋅Ryan, Michael⋅Badve, Sunil S and Badve, Sunil SEMBO reports, vol. 20, (no. 2), pp. n/a, February 2019.
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2018
A conserved enhancer regulates Il9 expression in multiple lineages.Koh, Byunghee⋅Abdul Qayum, Amina⋅Srivastava, Rajneesh⋅Fu, Yongyao⋅Ulrich, Benjamin J⋅Janga, Sarath Chandra and Kaplan, Mark HNature communications, vol. 9, (no. 1), pp. 4803, November 15, 2018.
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A Framework for Identifying Genotypic Information from Clinical RecordsHashemikhabir, Seyedsasan⋅Xia, Ran⋅Xiang, Yang and Janga, SarathIEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), vol. 15, (no. 4), pp. 1269, 07-01-2018.
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Epitranscriptomic Code and Its Alterations in Human Disease.Kadumuri, Rajashekar Varma and Janga, Sarath ChandraTrends in molecular medicine, August 14, 2018.
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Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues.Budak, Gungor⋅Dash, Soma⋅Srivastava, Rajneesh⋅Lachke, Salil A and Janga, Sarath ChandraExperimental eye research, vol. 168, pp. 57-68, January 11, 2018.
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Great Lakes Bioinformatics Conference GLBIO 2015 Special Section EditorialMilenkovic, Tijana and Janga, SarathIEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), vol. 15, (no. 4), pp. 1230, 07-01-2018.
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Loss of epigenetic regulator TET2 and oncogenic KIT regulate myeloid cell transformation via PI3K pathwayPalam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Mali, Raghuveer Singh⋅Mali, Raghuveer Singh⋅Mali, Raghuveer Singh⋅Mali, Raghuveer Singh⋅Mali, Raghuveer Singh⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Srivatsan, Sridhar Nonavinkere⋅Srivatsan, Sridhar Nonavinkere⋅Srivatsan, Sridhar Nonavinkere⋅Srivatsan, Sridhar Nonavinkere⋅Srivatsan, Sridhar Nonavinkere⋅Visconte, Valeria⋅Visconte, Valeria⋅Visconte, Valeria⋅Visconte, Valeria⋅Visconte, Valeria⋅Tiu, Ramon V⋅Tiu, Ramon V⋅Tiu, Ramon V⋅Tiu, Ramon V⋅Tiu, Ramon V⋅Vanhaesebroeck, Bart⋅Vanhaesebroeck, Bart⋅Vanhaesebroeck, Bart⋅Vanhaesebroeck, Bart⋅Vanhaesebroeck, Bart⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Xu, Mingjiang⋅Xu, Mingjiang⋅Xu, Mingjiang⋅Xu, Mingjiang⋅Xu, Mingjiang⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Takemoto, Clifford M⋅Takemoto, Clifford M⋅Takemoto, Clifford M⋅Takemoto, Clifford M⋅Takemoto, Clifford M⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Kapur, Reuben⋅Kapur, Reuben⋅Kapur, Reuben⋅Kapur, Reuben and Kapur, ReubenJCI insight, vol. 3, (no. 4), 2018-02-22.
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Temporal and Spatially Regulated Oncogenic KIT Expression and Loss of Dnmt3a Cooperate to Drive MPN Development: Role of PI3Kinase in Dnmt3a Loss Induced Hyperproliferation in Myeloid CellsPalam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Srivatsan, Sridhar reddy⋅Srivatsan, Sridhar reddy⋅Srivatsan, Sridhar reddy⋅Srivatsan, Sridhar reddy⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Kapur, Reuben⋅Kapur, Reuben⋅Kapur, Reuben and Kapur, ReubenBlood, vol. 132, (no. Supplement 1), pp. 3055, 2018-11-29.
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2017
Community-acquired rhinovirus infection is associated with changes in the airway microbiomeKloepfer, Kirsten⋅Kloepfer, Kirsten⋅Sarsani, Vishal K., MS⋅Sarsani, Vishal⋅Poroyko, Valeriy⋅Poroyko, Valeriy, PhD⋅Lee, Wai Ming, PhD⋅Lee, Wai⋅Pappas, Tressa⋅Pappas, Tressa⋅Kang, Theresa⋅Kang, Theresa⋅Grindle, Kristine⋅Grindle, Kristine⋅Bochkov, Yury⋅Bochkov, Yury A., PhD⋅Janga, Sarath⋅Janga, Sarath Chandra, PhD⋅Lemanske, Robert⋅Lemanske, Robert F., MD⋅Gern, James E., MD and Gern, JamesJournal of Allergy and Clinical Immunology, vol. 140, (no. 1), pp. 312-315, Jul 1, 2017.
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Differential Expression of miRNAs in Nontumor Liver Tissue of Patients With Hepatocellular Cancer Caused by Nonalcoholic Steatohepatitis CirrhosisLiang, Tiebing⋅Liang, Tiebing⋅Liang, Tiebing⋅Liang, Tiebing⋅Chalasani, Naga P⋅Chalasani, Naga P⋅Chalasani, Naga P⋅Chalasani, Naga P⋅Williams, Kent Edward⋅Williams, Kent Edward⋅Williams, Kent Edward⋅Williams, Kent Edward⋅Sarasani, Vishal⋅Sarasani, Vishal⋅Sarasani, Vishal⋅Sarasani, Vishal⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Vuppalanchi, Raj⋅Vuppalanchi, Raj⋅Vuppalanchi, Raj and Vuppalanchi, RajClinical Gastroenterology and Hepatology, vol. 15, (no. 3), pp. 467, March 2017.
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Molecular typing of canine parvovirus from sulaimani, Iraq and phylogenetic analysis using partial VP2 geneBaba Sheikh, M.O.⋅Rashid, P.M.A.⋅Marouf, A.S.⋅Raheem, Z.H.⋅Manjunath, S. and Janga, S.C.Bulgarian Journal of Veterinary Medicine, vol. 20, pp. 225-235.
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Mutational landscape of RNA-binding proteins in human cancers.Neelamraju, Yaseswini⋅Neelamraju, Yaseswini⋅Gonzalez-Perez, Abel⋅Gonzalez-Perez, Abel⋅Bhat-Nakshatri, Poornima⋅Bhat-Nakshatri, Poornima⋅Nakshatri, Harikrishna⋅Nakshatri, Harikrishna⋅Janga, Sarath Chandra and Janga, Sarath ChandraRNA biology, pp. 1-15, October 12, 2017.
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Paracrine IL-2 Is Required for Optimal Type 2 Effector Cytokine Production.Olson, Matthew R⋅Olson, Matthew R⋅Olson, Matthew R⋅Olson, Matthew R⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Hummel, Sarah A⋅Hummel, Sarah A⋅Hummel, Sarah A⋅Hummel, Sarah A⋅Khan, Ibrahim⋅Khan, Ibrahim⋅Khan, Ibrahim⋅Khan, Ibrahim⋅Meuris, Brice⋅Meuris, Brice⋅Meuris, Brice⋅Meuris, Brice⋅Cherukuri, Yesesri⋅Cherukuri, Yesesri⋅Cherukuri, Yesesri⋅Cherukuri, Yesesri⋅Dent, Alexander L⋅Dent, Alexander L⋅Dent, Alexander L⋅Dent, Alexander L⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Kaplan, Mark H⋅Kaplan, Mark H⋅Kaplan, Mark H and Kaplan, Mark HJournal of immunology (Baltimore, Md. : 1950), May 3, 2017.
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Phylogenic analysis of serotype Asia1 foot-and-mouth disease virus from Sulaimani/Iraq using VP1 protein: Heterogeneity with vaccine strain As1/Shamir/89Baba Sheikh, M.O.⋅Rashid, P.M.A.⋅Marouf, A.S.⋅Raheem, Z.H. and Janga, S.C.Iranian Journal of Veterinary Research, vol. 18, pp. 212-215.
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PSIP1/p75 promotes tumorigenicity in breast cancer cells by promoting the transcription of cell cycle genes.Singh, Deepak K⋅Gholamalamdari, Omid⋅Jadaliha, Mahdieh⋅Ling Li, Xiao⋅Lin, Yo-Chuen⋅Zhang, Yang⋅Guang, Shuomeng⋅Hashemikhabir, Seyedsasan⋅Tiwari, Saumya⋅Zhu, Yuelin J⋅Khan, Abid⋅Thomas, Anu⋅Chakraborty, Arindam⋅Macias, Virgilia⋅Balla, Andre K⋅Bhargava, Rohit⋅Janga, Sarath Chandra⋅Ma, Jian⋅Prasanth, Supriya G⋅Lal, Ashish and Prasanth, Kannanganattu VCarcinogenesis, June 17, 2017.
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RNA Editing in Pathogenesis of Cancer.Baysal, Bora E⋅Sharma, Shraddha⋅Hashemikhabir, Seyedsasan and Janga, Sarath ChandraCancer research, June 30, 2017.
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Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.Budak, Gungor⋅Srivastava, Rajneesh and Janga, Sarath ChandraRNA (New York, N.Y.), vol. 23, (no. 6), pp. 836-846, June 2017.
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Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterationsSrivastava, Rajneesh⋅Budak, Gungor⋅Dash, Soma⋅Lachke, Salil A and Janga, Sarath ChandraScientific reports, vol. 7, (no. 1), pp. 17, 2017-09-14.
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2016
Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.Cherukuri, Yesesri and Janga, Sarath ChandraBMC genomics, vol. 17, pp. 507.
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Comparative and temporal transcriptome analysis of peste des petits ruminants virus infected goat peripheral blood mononuclear cells.Manjunath, Siddappa⋅Mishra, Bishnu Prasad⋅Mishra, Bina⋅Sahoo, Aditya Prasad⋅Tiwari, Ashok K⋅Rajak, Kaushal Kishore⋅Muthuchelvan, D⋅Saxena, Shikha⋅Santra, Lakshman⋅Sahu, Amit Ranjan⋅Wani, Sajad Ahmad⋅Singh, R P⋅Singh, Y P⋅Pandey, Aruna⋅Kanchan, Sonam⋅Singh, R K⋅Kumar, Gandham Ravi and Janga, Sarath ChandraVirus research, December 22, 2016.
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