136 Publications (Page 2 of 6)
2019
Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data
Eller, Ryan J⋅Eller, Ryan J⋅Eller, Ryan J.⋅Janga, Sarath C⋅Janga, Sarath C⋅Janga, Sarath C.⋅Walsh, Susan⋅Walsh, Susan and Walsh, Susan
BMC bioinformatics, vol. 20, (no. 1), pp. 364, 2019-Jun-28. | Journal Article
 
Sequoia: An interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets
Koonchanok, Ratanond⋅Daulatabad, Swapna Vidhur⋅Mir, Quoseena⋅Reda, Khairi and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
SliceIt: A genome-wide resource and visualization tool to design CRISPR/Cas9 screens for editing protein-RNA interaction sites in the human genome
Vemuri, Sasank⋅Srivastava, Rajneesh⋅Mir, Quoseena⋅Hashemikhabir, Seyedsasan⋅Dong, X. Charlie and Janga, Sarath Chandra
Methods, 2019-Sep-05. | Journal Article
 
Splicing factor ESRP1 controls ER‐positive breast cancer by altering metabolic pathways
Gökmen‐Polar, Yesim⋅Gökmen‐Polar, Yesim⋅Neelamraju, Yaseswini⋅Neelamraju, Yaseswini⋅Goswami, Chirayu P⋅Goswami, Chirayu P⋅Gu, Yuan⋅Gu, Yuan⋅Gu, Xiaoping⋅Gu, Xiaoping⋅Nallamothu, Gouthami⋅Nallamothu, Gouthami⋅Vieth, Edyta⋅Vieth, Edyta⋅Janga, Sarath C⋅Janga, Sarath C⋅Ryan, Michael⋅Ryan, Michael⋅Badve, Sunil S and Badve, Sunil S
EMBO reports, vol. 20, (no. 2), pp. n/a, February 2019. | Journal Article
2018
A conserved enhancer regulates Il9 expression in multiple lineages.
Koh, Byunghee⋅Abdul Qayum, Amina⋅Srivastava, Rajneesh⋅Fu, Yongyao⋅Ulrich, Benjamin J⋅Janga, Sarath Chandra and Kaplan, Mark H
Nature communications, vol. 9, (no. 1), pp. 4803, November 15, 2018. | Journal Article
 
A Framework for Identifying Genotypic Information from Clinical Records
Hashemikhabir, Seyedsasan⋅Xia, Ran⋅Xiang, Yang and Janga, Sarath
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), vol. 15, (no. 4), pp. 1269, 07-01-2018. | Journal Article
 
Epitranscriptomic Code and Its Alterations in Human Disease.
Kadumuri, Rajashekar Varma and Janga, Sarath Chandra
Trends in molecular medicine, August 14, 2018. | Journal Article
 
Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues.
Budak, Gungor⋅Dash, Soma⋅Srivastava, Rajneesh⋅Lachke, Salil A and Janga, Sarath Chandra
Experimental eye research, vol. 168, pp. 57-68, January 11, 2018. | Journal Article
 
Great Lakes Bioinformatics Conference GLBIO 2015 Special Section Editorial
Milenkovic, Tijana and Janga, Sarath
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), vol. 15, (no. 4), pp. 1230, 07-01-2018. | Journal Article
 
Loss of epigenetic regulator TET2 and oncogenic KIT regulate myeloid cell transformation via PI3K pathway
Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Mali, Raghuveer Singh⋅Mali, Raghuveer Singh⋅Mali, Raghuveer Singh⋅Mali, Raghuveer Singh⋅Mali, Raghuveer Singh⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Srivatsan, Sridhar Nonavinkere⋅Srivatsan, Sridhar Nonavinkere⋅Srivatsan, Sridhar Nonavinkere⋅Srivatsan, Sridhar Nonavinkere⋅Srivatsan, Sridhar Nonavinkere⋅Visconte, Valeria⋅Visconte, Valeria⋅Visconte, Valeria⋅Visconte, Valeria⋅Visconte, Valeria⋅Tiu, Ramon V⋅Tiu, Ramon V⋅Tiu, Ramon V⋅Tiu, Ramon V⋅Tiu, Ramon V⋅Vanhaesebroeck, Bart⋅Vanhaesebroeck, Bart⋅Vanhaesebroeck, Bart⋅Vanhaesebroeck, Bart⋅Vanhaesebroeck, Bart⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Xu, Mingjiang⋅Xu, Mingjiang⋅Xu, Mingjiang⋅Xu, Mingjiang⋅Xu, Mingjiang⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Takemoto, Clifford M⋅Takemoto, Clifford M⋅Takemoto, Clifford M⋅Takemoto, Clifford M⋅Takemoto, Clifford M⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Kapur, Reuben⋅Kapur, Reuben⋅Kapur, Reuben⋅Kapur, Reuben and Kapur, Reuben
JCI insight, vol. 3, (no. 4), 2018-02-22. | Journal Article
 
Temporal and Spatially Regulated Oncogenic KIT Expression and Loss of Dnmt3a Cooperate to Drive MPN Development: Role of PI3Kinase in Dnmt3a Loss Induced Hyperproliferation in Myeloid Cells
Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Palam, Lakshmi Reddy⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Srivatsan, Sridhar reddy⋅Srivatsan, Sridhar reddy⋅Srivatsan, Sridhar reddy⋅Srivatsan, Sridhar reddy⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Roers, Axel⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Gerbaulet, Alexander⋅Kapur, Reuben⋅Kapur, Reuben⋅Kapur, Reuben and Kapur, Reuben
Blood, vol. 132, (no. Supplement 1), pp. 3055, 2018-11-29. | Journal Article
2017
Community-acquired rhinovirus infection is associated with changes in the airway microbiome
Kloepfer, Kirsten⋅Kloepfer, Kirsten⋅Sarsani, Vishal⋅Sarsani, Vishal K., MS⋅Poroyko, Valeriy⋅Poroyko, Valeriy, PhD⋅Lee, Wai⋅Lee, Wai Ming, PhD⋅Pappas, Tressa⋅Pappas, Tressa⋅Kang, Theresa⋅Kang, Theresa⋅Grindle, Kristine⋅Grindle, Kristine⋅Bochkov, Yury⋅Bochkov, Yury A., PhD⋅Janga, Sarath⋅Janga, Sarath Chandra, PhD⋅Lemanske, Robert⋅Lemanske, Robert F., MD⋅Gern, James and Gern, James E., MD
Journal of Allergy and Clinical Immunology, vol. 140, (no. 1), pp. 312-315, Jul 1, 2017. | Journal Article
 
Differential Expression of miRNAs in Nontumor Liver Tissue of Patients With Hepatocellular Cancer Caused by Nonalcoholic Steatohepatitis Cirrhosis
Liang, Tiebing⋅Liang, Tiebing⋅Liang, Tiebing⋅Liang, Tiebing⋅Chalasani, Naga P⋅Chalasani, Naga P⋅Chalasani, Naga P⋅Chalasani, Naga P⋅Williams, Kent Edward⋅Williams, Kent Edward⋅Williams, Kent Edward⋅Williams, Kent Edward⋅Sarasani, Vishal⋅Sarasani, Vishal⋅Sarasani, Vishal⋅Sarasani, Vishal⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Vuppalanchi, Raj⋅Vuppalanchi, Raj⋅Vuppalanchi, Raj and Vuppalanchi, Raj
Clinical Gastroenterology and Hepatology, vol. 15, (no. 3), pp. 467, March 2017. | Journal Article
 
Molecular typing of canine parvovirus from sulaimani, Iraq and phylogenetic analysis using partial VP2 gene
Baba Sheikh, M.O.⋅Rashid, P.M.A.⋅Marouf, A.S.⋅Raheem, Z.H.⋅Manjunath, S. and Janga, S.C.
Bulgarian Journal of Veterinary Medicine, vol. 20, pp. 225-235. | Journal Article
 
Mutational landscape of RNA-binding proteins in human cancers.
Neelamraju, Yaseswini⋅Neelamraju, Yaseswini⋅Gonzalez-Perez, Abel⋅Gonzalez-Perez, Abel⋅Bhat-Nakshatri, Poornima⋅Bhat-Nakshatri, Poornima⋅Nakshatri, Harikrishna⋅Nakshatri, Harikrishna⋅Janga, Sarath Chandra and Janga, Sarath Chandra
RNA biology, pp. 1-15, October 12, 2017. | Journal Article
 
Paracrine IL-2 Is Required for Optimal Type 2 Effector Cytokine Production.
Olson, Matthew R⋅Olson, Matthew R⋅Olson, Matthew R⋅Olson, Matthew R⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Hummel, Sarah A⋅Hummel, Sarah A⋅Hummel, Sarah A⋅Hummel, Sarah A⋅Khan, Ibrahim⋅Khan, Ibrahim⋅Khan, Ibrahim⋅Khan, Ibrahim⋅Meuris, Brice⋅Meuris, Brice⋅Meuris, Brice⋅Meuris, Brice⋅Cherukuri, Yesesri⋅Cherukuri, Yesesri⋅Cherukuri, Yesesri⋅Cherukuri, Yesesri⋅Dent, Alexander L⋅Dent, Alexander L⋅Dent, Alexander L⋅Dent, Alexander L⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Kaplan, Mark H⋅Kaplan, Mark H⋅Kaplan, Mark H and Kaplan, Mark H
Journal of immunology (Baltimore, Md. : 1950), May 3, 2017. | Journal Article
 
Phylogenic analysis of serotype Asia1 foot-and-mouth disease virus from Sulaimani/Iraq using VP1 protein: Heterogeneity with vaccine strain As1/Shamir/89
Baba Sheikh, M.O.⋅Rashid, P.M.A.⋅Marouf, A.S.⋅Raheem, Z.H. and Janga, S.C.
Iranian Journal of Veterinary Research, vol. 18, pp. 212-215. | Journal Article
 
PSIP1/p75 promotes tumorigenicity in breast cancer cells by promoting the transcription of cell cycle genes.
Singh, Deepak K⋅Gholamalamdari, Omid⋅Jadaliha, Mahdieh⋅Ling Li, Xiao⋅Lin, Yo-Chuen⋅Zhang, Yang⋅Guang, Shuomeng⋅Hashemikhabir, Seyedsasan⋅Tiwari, Saumya⋅Zhu, Yuelin J⋅Khan, Abid⋅Thomas, Anu⋅Chakraborty, Arindam⋅Macias, Virgilia⋅Balla, Andre K⋅Bhargava, Rohit⋅Janga, Sarath Chandra⋅Ma, Jian⋅Prasanth, Supriya G⋅Lal, Ashish and Prasanth, Kannanganattu V
Carcinogenesis, June 17, 2017. | Journal Article
 
RNA Editing in Pathogenesis of Cancer.
Baysal, Bora E⋅Sharma, Shraddha⋅Hashemikhabir, Seyedsasan and Janga, Sarath Chandra
Cancer research, June 30, 2017. | Journal Article
 
Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Budak, Gungor⋅Srivastava, Rajneesh and Janga, Sarath Chandra
RNA (New York, N.Y.), vol. 23, (no. 6), pp. 836-846, June 2017. | Journal Article
 
Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations
Srivastava, Rajneesh⋅Budak, Gungor⋅Dash, Soma⋅Lachke, Salil A and Janga, Sarath Chandra
Scientific reports, vol. 7, (no. 1), pp. 17, 2017-09-14. | Journal Article
2016
Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
Cherukuri, Yesesri and Janga, Sarath Chandra
BMC genomics, vol. 17, pp. 507. | Journal Article
 
Comparative and temporal transcriptome analysis of peste des petits ruminants virus infected goat peripheral blood mononuclear cells.
Manjunath, Siddappa⋅Mishra, Bishnu Prasad⋅Mishra, Bina⋅Sahoo, Aditya Prasad⋅Tiwari, Ashok K⋅Rajak, Kaushal Kishore⋅Muthuchelvan, D⋅Saxena, Shikha⋅Santra, Lakshman⋅Sahu, Amit Ranjan⋅Wani, Sajad Ahmad⋅Singh, R P⋅Singh, Y P⋅Pandey, Aruna⋅Kanchan, Sonam⋅Singh, R K⋅Kumar, Gandham Ravi and Janga, Sarath Chandra
Virus research, December 22, 2016. | Journal Article
 
Cover Image, Volume 7, Issue 4
Dash, Soma⋅Siddam, Archana D⋅Barnum, Carrie E⋅Janga, Sarath Chandra and Lachke, Salil A
Wiley Interdisciplinary Reviews: RNA, vol. 7, (no. 4), pp. i, 2016-07-00. | Journal Article
 
Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks
Nishtala, Sneha⋅Neelamraju, Yaseswini and Janga, Sarath
Scientific Reports (Nature Publisher Group), vol. 6, pp. 25711, May 2016. | Journal Article