136 Publications (Page 1 of 6)
2023
Experimental and computational methods for studying the dynamics of RNA–RNA interactions in SARS-COV2 genomes. Briefings in Functional Genomics
. | Journal Article
2022
A Putative long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2. PLOS ONE
 
CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion
BMC Genomics. | Journal Article
 
Combining Transfer Learning with Retinal Lesions Features for Accurate Detection of Diabetic Retinopathy
 
Epitranscriptomics in parasitic protists: Role of RNA chemical modifications in posttranscriptional gene regulation
Catacalos, Cassandra⋅Krohannon, Alexander⋅Somalraju, Sahiti⋅Meyer, Kate D and Janga, Sarath C
Dec 2022
 
Nm-Nano: Predicting 2′-O-methylation (Nm) Sites in Nanopore RNA Sequencing Data
2021
CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion
Krohannon, Alexander⋅Srivastava, Mansi⋅Rauch, Simone⋅Srivastava, Rajneesh⋅Dickinson, Bryan C. and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Comparative Analysis of Alternative Splicing Profiles in Th Cell Subsets Reveals Extensive Cell Type–Specific Effects Modulated by a Network of Transcription Factors and RNA-Binding Proteins
ImmunoHorizons. | Journal Article
 
Evidence for a long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2
 
Lantern: an integrative repository of functional annotations for lncRNAs in the human genome
Daulatabad, Swapna Vidhur⋅Srivastava, Rajneesh and Janga, Sarath Chandra
BMC Bioinformatics, vol. 22. | Journal Article
 
Mutational Landscape and Interaction of SARS-CoV-2 with Host Cellular Components
Microorganisms. | Journal Article
 
New Twists in Detecting mRNA Modification Dynamics
Anreiter, Ina⋅Simpson, Jared T⋅Janga, Sarath C and Soller, Matthias
Trends in Biotechnology, vol. 39, (no. 1), pp. 72-89, Jan 2021. | Journal Article
 
Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
Hassan, Doaa⋅Acevedo, Daniel⋅Daulatabad, Swapna Vidhur⋅Mir, Quoseena and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets
Koonchanok, Ratanond⋅Koonchanok, Ratanond⋅Daulatabad, Swapna V⋅Daulatabad, Swapna Vidhur⋅Mir, Quoseena⋅Reda, Khairi⋅Reda, Khairi⋅Janga, Sarath C and Janga, Sarath Chandra
BMC Genomics, vol. 22, pp. 1-13, 2021. | Journal Article
2020
A circular RNA from the MDM2 locus controls cell cycle progression by suppressing p53 levels.
Molecular and cellular biology. | Journal Article
 
Bcl6 and Blimp1 reciprocally regulate ST2+ Treg–cell development in the context of allergic airway inflammation
Koh, Byunghee⋅Koh, Byunghee⋅Koh, Byunghee⋅Koh, Byunghee⋅Koh, Byunghee⋅Koh, Byunghee⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Ulrich, Benjamin J⋅Nelson, Andrew S⋅Nelson, Andrew S⋅Nelson, Andrew S⋅Nelson, Andrew S⋅Nelson, Andrew S⋅Nelson, Andrew S⋅Panangipalli, Gayathri⋅Panangipalli, Gayathri⋅Panangipalli, Gayathri⋅Panangipalli, Gayathri⋅Panangipalli, Gayathri⋅Panangipalli, Gayathri⋅Kharwadkar, Rakshin⋅Kharwadkar, Rakshin⋅Kharwadkar, Rakshin⋅Kharwadkar, Rakshin⋅Kharwadkar, Rakshin⋅Kharwadkar, Rakshin⋅Wu, Wenting⋅Wu, Wenting⋅Wu, Wenting⋅Wu, Wenting⋅Wu, Wenting⋅Wu, Wenting⋅Xie, Markus M⋅Xie, Markus M⋅Xie, Markus M⋅Xie, Markus M⋅Xie, Markus M⋅Xie, Markus M⋅Fu, Yongyao⋅Fu, Yongyao⋅Fu, Yongyao⋅Fu, Yongyao⋅Fu, Yongyao⋅Fu, Yongyao⋅Turner, Matthew J⋅Turner, Matthew J⋅Turner, Matthew J⋅Turner, Matthew J⋅Turner, Matthew J⋅Turner, Matthew J⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Dent, Alexander L⋅Dent, Alexander L⋅Dent, Alexander L⋅Dent, Alexander L⋅Dent, Alexander L⋅Dent, Alexander L⋅Kaplan, Mark H⋅Kaplan, Mark H⋅Kaplan, Mark H⋅Kaplan, Mark H⋅Kaplan, Mark H and Kaplan, Mark H
The Journal of Allergy and Clinical Immunology, 2020-Mar-13. | Journal Article
 
Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects
Sarmah, Swapnalee⋅Sarmah, Swapnalee⋅Sarmah, Swapnalee⋅Sarmah, Swapnalee⋅Srivastava, Rajneesh⋅Srivastava, Rajneesh⋅Srivastava, Rajneesh⋅Srivastava, Rajneesh⋅McClintick, Jeanette N⋅McClintick, Jeanette N⋅McClintick, Jeanette N⋅McClintick, Jeanette N⋅Janga, Sarath C⋅Janga, Sarath C⋅Janga, Sarath C⋅Janga, Sarath C⋅Edenberg, Howard J⋅Edenberg, Howard J⋅Edenberg, Howard J⋅Edenberg, Howard J⋅Marrs, James A⋅Marrs, James A⋅Marrs, James A and Marrs, James A
Scientific reports, vol. 10, (no. 1), pp. 3951, 2020-Mar-03. | Journal Article
 
Role of SARS-CoV-2 in altering the RNA binding protein and miRNA directed post-transcriptional regulatory networks in humans
Srivastava, Rajneesh⋅Daulatabad, Swapna Vidhur⋅Srivastava, Mansi and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans
International Journal of Molecular Sciences. | Journal Article
 
Transcriptome-wide high-throughput mapping of protein-RNA occupancy profiles using POP-seq
Srivastava, Mansi⋅Srivastava, Rajneesh and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
2019
Early transcriptome profile of goat peripheral blood mononuclear cells (PBMCs) infected with peste des petits ruminant's vaccine virus (Sungri/96) revealed induction of antiviral response in an interferon independent manner
Manjunath, Siddappa⋅Saxena, Shikha⋅Mishra, Bina⋅Santra, Lakshman⋅Sahu, Amit Ranjan⋅Wani, Sajad Ahmed⋅Tiwari, Ashok Kumar⋅Mishra, Bishnu Prasad⋅Singh, Raj Kumar⋅Janga, Sarath Chandra and Kumar, Gandham Ravi
Research in Veterinary Science, vol. 124, pp. 177, June 2019. | Journal Article
 
Human protein-RNA interaction network is highly stable across mammals
Ramakrishnan, Aarthi and Janga, Sarath C
BMC Genomics, vol. 20(Suppl 12), pp. 1-14, 2019. | Journal Article
 
Long non-coding RNA expression levels modulate cell-type specific splicing patterns by altering their interaction landscape with RNA-binding proteins
Porto, Felipe Wendt⋅Daulatabad, Swapna Vidhur and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Long Non-Coding RNA Expression Levels Modulate Cell-Type Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins
Porto, Felipe Wendt⋅Daulatabad, Swapna Vidhur and Janga, Sarath Chandra
MDPI AG
 
Long Non-Coding RNA Expression Levels Modulate Cell-Type-Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins
Porto, Felipe Wendt⋅Daulatabad, Swapna Vidhur and Janga, Sarath Chandra
Genes, vol. 10, (no. 8), pp. 593, 2019-08-06. | Journal Article