132 Publications (Page 1 of 6)
2022
CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion
BMC Genomics. | Journal Article
 
Nm-Nano: Predicting 2′-O-methylation (Nm) Sites in Nanopore RNA Sequencing Data
2021
CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion
Krohannon, AlexanderSrivastava, MansiRauch, SimoneSrivastava, RajneeshDickinson, Bryan C. and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Comparative Analysis of Alternative Splicing Profiles in Th Cell Subsets Reveals Extensive Cell Type–Specific Effects Modulated by a Network of Transcription Factors and RNA-Binding Proteins
ImmunoHorizons. | Journal Article
 
Evidence for a long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2
 
Lantern: an integrative repository of functional annotations for lncRNAs in the human genome
Daulatabad, Swapna VidhurSrivastava, Rajneesh and Janga, Sarath Chandra
BMC Bioinformatics, vol. 22. | Journal Article
 
Mutational Landscape and Interaction of SARS-CoV-2 with Host Cellular Components
Microorganisms. | Journal Article
 
New Twists in Detecting mRNA Modification Dynamics
Anreiter, InaSimpson, Jared TJanga, Sarath C and Soller, Matthias
Trends in Biotechnology, vol. 39, (no. 1), pp. 72-89, Jan 2021. | Journal Article
 
Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
Hassan, DoaaAcevedo, DanielDaulatabad, Swapna VidhurMir, Quoseena and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets
Koonchanok, RatanondKoonchanok, RatanondDaulatabad, Swapna VDaulatabad, Swapna VidhurMir, QuoseenaReda, KhairiReda, KhairiJanga, Sarath C and Janga, Sarath Chandra
BMC Genomics, vol. 22, pp. 1-13, 2021. | Journal Article
2020
A circular RNA from the MDM2 locus controls cell cycle progression by suppressing p53 levels.
Molecular and cellular biology. | Journal Article
 
Bcl6 and Blimp1 reciprocally regulate ST2+ Treg–cell development in the context of allergic airway inflammation
Koh, ByungheeKoh, ByungheeKoh, ByungheeKoh, ByungheeKoh, ByungheeKoh, ByungheeUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JNelson, Andrew SNelson, Andrew SNelson, Andrew SNelson, Andrew SNelson, Andrew SNelson, Andrew SPanangipalli, GayathriPanangipalli, GayathriPanangipalli, GayathriPanangipalli, GayathriPanangipalli, GayathriPanangipalli, GayathriKharwadkar, RakshinKharwadkar, RakshinKharwadkar, RakshinKharwadkar, RakshinKharwadkar, RakshinKharwadkar, RakshinWu, WentingWu, WentingWu, WentingWu, WentingWu, WentingWu, WentingXie, Markus MXie, Markus MXie, Markus MXie, Markus MXie, Markus MXie, Markus MFu, YongyaoFu, YongyaoFu, YongyaoFu, YongyaoFu, YongyaoFu, YongyaoTurner, Matthew JTurner, Matthew JTurner, Matthew JTurner, Matthew JTurner, Matthew JTurner, Matthew JPaczesny, SophiePaczesny, SophiePaczesny, SophiePaczesny, SophiePaczesny, SophiePaczesny, SophieJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraDent, Alexander LDent, Alexander LDent, Alexander LDent, Alexander LDent, Alexander LDent, Alexander LKaplan, Mark HKaplan, Mark HKaplan, Mark HKaplan, Mark HKaplan, Mark H and Kaplan, Mark H
The Journal of Allergy and Clinical Immunology, 2020-Mar-13. | Journal Article
 
Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects
Sarmah, SwapnaleeSarmah, SwapnaleeSarmah, SwapnaleeSarmah, SwapnaleeSrivastava, RajneeshSrivastava, RajneeshSrivastava, RajneeshSrivastava, RajneeshMcClintick, Jeanette NMcClintick, Jeanette NMcClintick, Jeanette NMcClintick, Jeanette NJanga, Sarath CJanga, Sarath CJanga, Sarath CJanga, Sarath CEdenberg, Howard JEdenberg, Howard JEdenberg, Howard JEdenberg, Howard JMarrs, James AMarrs, James AMarrs, James A and Marrs, James A
Scientific reports, vol. 10, (no. 1), pp. 3951, 2020-Mar-03. | Journal Article
 
Role of SARS-CoV-2 in altering the RNA binding protein and miRNA directed post-transcriptional regulatory networks in humans
Srivastava, RajneeshDaulatabad, Swapna VidhurSrivastava, Mansi and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans
International Journal of Molecular Sciences. | Journal Article
 
Transcriptome-wide high-throughput mapping of protein-RNA occupancy profiles using POP-seq
Srivastava, MansiSrivastava, Rajneesh and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
2019
Early transcriptome profile of goat peripheral blood mononuclear cells (PBMCs) infected with peste des petits ruminant's vaccine virus (Sungri/96) revealed induction of antiviral response in an interferon independent manner
Manjunath, SiddappaSaxena, ShikhaMishra, BinaSantra, LakshmanSahu, Amit RanjanWani, Sajad AhmedTiwari, Ashok KumarMishra, Bishnu PrasadSingh, Raj KumarJanga, Sarath Chandra and Kumar, Gandham Ravi
Research in Veterinary Science, vol. 124, pp. 177, June 2019. | Journal Article
 
Human protein-RNA interaction network is highly stable across mammals
Ramakrishnan, Aarthi and Janga, Sarath C
BMC Genomics, vol. 20(Suppl 12), pp. 1-14, 2019. | Journal Article
 
Long non-coding RNA expression levels modulate cell-type specific splicing patterns by altering their interaction landscape with RNA-binding proteins
Porto, Felipe WendtDaulatabad, Swapna Vidhur and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Long Non-Coding RNA Expression Levels Modulate Cell-Type Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins
Porto, Felipe WendtDaulatabad, Swapna Vidhur and Janga, Sarath Chandra
MDPI AG
 
Long Non-Coding RNA Expression Levels Modulate Cell-Type-Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins
Porto, Felipe WendtDaulatabad, Swapna Vidhur and Janga, Sarath Chandra
Genes, vol. 10, (no. 8), pp. 593, 2019-08-06. | Journal Article
 
Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data
Eller, Ryan JEller, Ryan JEller, Ryan J.Janga, Sarath CJanga, Sarath CJanga, Sarath C.Walsh, SusanWalsh, Susan and Walsh, Susan
BMC bioinformatics, vol. 20, (no. 1), pp. 364, 2019-Jun-28. | Journal Article
 
Sequoia: An interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets
Koonchanok, RatanondDaulatabad, Swapna VidhurMir, QuoseenaReda, Khairi and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
SliceIt: A genome-wide resource and visualization tool to design CRISPR/Cas9 screens for editing protein-RNA interaction sites in the human genome
Vemuri, SasankSrivastava, RajneeshMir, QuoseenaHashemikhabir, SeyedsasanDong, X. Charlie and Janga, Sarath Chandra
Methods, 2019-Sep-05. | Journal Article
 
Splicing factor ESRP1 controls ER‐positive breast cancer by altering metabolic pathways
Gökmen‐Polar, YesimGökmen‐Polar, YesimNeelamraju, YaseswiniNeelamraju, YaseswiniGoswami, Chirayu PGoswami, Chirayu PGu, YuanGu, YuanGu, XiaopingGu, XiaopingNallamothu, GouthamiNallamothu, GouthamiVieth, EdytaVieth, EdytaJanga, Sarath CJanga, Sarath CRyan, MichaelRyan, MichaelBadve, Sunil S and Badve, Sunil S
EMBO reports, vol. 20, (no. 2), pp. n/a, February 2019. | Journal Article