139 Publications (Page 1 of 6)
2024
Inflammation primes the murine kidney for recovery by activating AZIN1 adenosine-to-inosine editing. Journal of Clinical Investigation
. | Journal Article
2023
Experimental and computational methods for studying the dynamics of RNA–RNA interactions in SARS-COV2 genomes. Briefings in Functional Genomics
. | Journal Article
 
Inflammation primes the kidney for recovery by activating AZIN1 A-to-I editing
 
Read-depth based approach on whole genome resequencing data reveals important insights into the copy number variation (CNV) map of major global buffalo breeds
Vaishnav, SakshiKumar, AmitGaur, Gyanendra KJanga, Sarath CAhmad, Syed M and Dutt, Triveni
BMC Genomics, vol. 24, pp. 1-14, 2023. | Journal Article
2022
A Putative long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2. PLOS ONE
 
CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion
BMC Genomics. | Journal Article
 
Combining Transfer Learning with Retinal Lesions Features for Accurate Detection of Diabetic Retinopathy
 
Epitranscriptomics in parasitic protists: Role of RNA chemical modifications in posttranscriptional gene regulation
Catacalos, CassandraKrohannon, AlexanderSomalraju, SahitiMeyer, Kate D and Janga, Sarath C
Dec 2022
 
Nm-Nano: Predicting 2′-O-methylation (Nm) Sites in Nanopore RNA Sequencing Data
2021
CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion
Krohannon, AlexanderSrivastava, MansiRauch, SimoneSrivastava, RajneeshDickinson, Bryan C. and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Comparative Analysis of Alternative Splicing Profiles in Th Cell Subsets Reveals Extensive Cell Type–Specific Effects Modulated by a Network of Transcription Factors and RNA-Binding Proteins
ImmunoHorizons. | Journal Article
 
Evidence for a long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2
 
Lantern: an integrative repository of functional annotations for lncRNAs in the human genome
Daulatabad, Swapna VidhurSrivastava, Rajneesh and Janga, Sarath Chandra
BMC Bioinformatics, vol. 22. | Journal Article
 
Mutational Landscape and Interaction of SARS-CoV-2 with Host Cellular Components
Microorganisms. | Journal Article
 
New Twists in Detecting mRNA Modification Dynamics
Anreiter, InaSimpson, Jared TJanga, Sarath C and Soller, Matthias
Trends in Biotechnology, vol. 39, (no. 1), pp. 72-89, Jan 2021. | Journal Article
 
Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
Hassan, DoaaAcevedo, DanielDaulatabad, Swapna VidhurMir, Quoseena and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets
Koonchanok, RatanondKoonchanok, RatanondDaulatabad, Swapna VDaulatabad, Swapna VidhurMir, QuoseenaReda, KhairiReda, KhairiJanga, Sarath C and Janga, Sarath Chandra
BMC Genomics, vol. 22, pp. 1-13, 2021. | Journal Article
2020
A circular RNA from the MDM2 locus controls cell cycle progression by suppressing p53 levels.
Molecular and cellular biology. | Journal Article
 
Bcl6 and Blimp1 reciprocally regulate ST2+ Treg–cell development in the context of allergic airway inflammation
Koh, ByungheeKoh, ByungheeKoh, ByungheeKoh, ByungheeKoh, ByungheeKoh, ByungheeUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JUlrich, Benjamin JNelson, Andrew SNelson, Andrew SNelson, Andrew SNelson, Andrew SNelson, Andrew SNelson, Andrew SPanangipalli, GayathriPanangipalli, GayathriPanangipalli, GayathriPanangipalli, GayathriPanangipalli, GayathriPanangipalli, GayathriKharwadkar, RakshinKharwadkar, RakshinKharwadkar, RakshinKharwadkar, RakshinKharwadkar, RakshinKharwadkar, RakshinWu, WentingWu, WentingWu, WentingWu, WentingWu, WentingWu, WentingXie, Markus MXie, Markus MXie, Markus MXie, Markus MXie, Markus MXie, Markus MFu, YongyaoFu, YongyaoFu, YongyaoFu, YongyaoFu, YongyaoFu, YongyaoTurner, Matthew JTurner, Matthew JTurner, Matthew JTurner, Matthew JTurner, Matthew JTurner, Matthew JPaczesny, SophiePaczesny, SophiePaczesny, SophiePaczesny, SophiePaczesny, SophiePaczesny, SophieJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraJanga, Sarath ChandraDent, Alexander LDent, Alexander LDent, Alexander LDent, Alexander LDent, Alexander LDent, Alexander LKaplan, Mark HKaplan, Mark HKaplan, Mark HKaplan, Mark HKaplan, Mark H and Kaplan, Mark H
The Journal of Allergy and Clinical Immunology, 2020-Mar-13. | Journal Article
 
Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects
Sarmah, SwapnaleeSarmah, SwapnaleeSarmah, SwapnaleeSarmah, SwapnaleeSrivastava, RajneeshSrivastava, RajneeshSrivastava, RajneeshSrivastava, RajneeshMcClintick, Jeanette NMcClintick, Jeanette NMcClintick, Jeanette NMcClintick, Jeanette NJanga, Sarath CJanga, Sarath CJanga, Sarath CJanga, Sarath CEdenberg, Howard JEdenberg, Howard JEdenberg, Howard JEdenberg, Howard JMarrs, James AMarrs, James AMarrs, James A and Marrs, James A
Scientific reports, vol. 10, (no. 1), pp. 3951, 2020-Mar-03. | Journal Article
 
Role of SARS-CoV-2 in altering the RNA binding protein and miRNA directed post-transcriptional regulatory networks in humans
Srivastava, RajneeshDaulatabad, Swapna VidhurSrivastava, Mansi and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
 
Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans
International Journal of Molecular Sciences. | Journal Article
 
Transcriptome-wide high-throughput mapping of protein-RNA occupancy profiles using POP-seq
Srivastava, MansiSrivastava, Rajneesh and Janga, Sarath Chandra
Cold Spring Harbor Laboratory
2019
Early transcriptome profile of goat peripheral blood mononuclear cells (PBMCs) infected with peste des petits ruminant's vaccine virus (Sungri/96) revealed induction of antiviral response in an interferon independent manner
Manjunath, SiddappaSaxena, ShikhaMishra, BinaSantra, LakshmanSahu, Amit RanjanWani, Sajad AhmedTiwari, Ashok KumarMishra, Bishnu PrasadSingh, Raj KumarJanga, Sarath Chandra and Kumar, Gandham Ravi
Research in Veterinary Science, vol. 124, pp. 177, June 2019. | Journal Article
 
Human protein-RNA interaction network is highly stable across mammals
Ramakrishnan, Aarthi and Janga, Sarath C
BMC Genomics, vol. 20(Suppl 12), pp. 1-14, 2019. | Journal Article