26 Publications (Page 1 of 2)
2021
A graph neural network model to estimate cell-wise metabolic flux using single-cell RNA-seq data.
Alghamdi, Norah⋅Alghamdi, Norah⋅Alghamdi, Norah⋅N, Alghamdi⋅Chang, Wennan⋅Chang, Wennan⋅Chang, Wennan⋅W, Chang⋅Dang, Pengtao⋅Dang, Pengtao⋅Dang, Pengtao⋅P, Dang⋅Lu, Xiaoyu⋅Lu, Xiaoyu⋅Lu, Xiaoyu⋅X, Lu⋅C, Wan⋅Wan, Changlin⋅Wan, Changlin⋅Wan, Changlin⋅Gampala, Silpa⋅S, Gampala⋅Gampala, Silpa⋅Gampala, Silpa⋅Huang, Zhi⋅Z, Huang⋅Huang, Zhi⋅Huang, Zhi⋅Wang, Jiashi⋅Wang, Jiashi⋅Wang, Jiashi⋅J, Wang⋅Ma, Qin⋅Q, Ma⋅Ma, Qin⋅Ma, Qin⋅Zang, Yong⋅Zang, Yong⋅Zang, Yong⋅Y, Zang⋅Fishel, Melissa L⋅M, Fishel⋅Fishel, Melissa⋅Fishel, Melissa L⋅Cao, Sha⋅S, Cao⋅Cao, Sha⋅Cao, Sha⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi and C, Zhang
Genome research, July 22, 2021. | Journal Article
 
MAL2 drives immune evasion in breast cancer by suppressing tumor antigen presentation
Fang, Yuanzhang⋅Fang, Yuanzhang⋅Fang, Yuanzhang⋅Y, Fang⋅Fang, Yuanzhang⋅Wang, Lifei⋅L, Wang⋅Wang, Lifei⋅Wang, Lifei⋅Wang, Lifei⋅C, Wan⋅Wan, Changlin⋅Wan, Changlin⋅Wan, Changlin⋅Wan, Changlin⋅Sun, Yifan⋅Sun, Yifan⋅Y, Sun⋅Sun, Yifan⋅Sun, Yifan⋅Jeught K, Van⋅VAn der Jeught, Kevin⋅VAn der Jeught, Kevin⋅VAn der Jeught, Kevin⋅VAn der Jeught, Kevin⋅Zhou, Zhuolong⋅Z, Zhou⋅Zhou, Zhuolong⋅Zhou, Zhuolong⋅Zhou, Zhuolong⋅Dong, Tianhan⋅T, Dong⋅Dong, Tianhan⋅Dong, Tianhan⋅Dong, Tianhan⋅So, Ka M⋅KM, So⋅So, Ka M⋅So, Ka M⋅So, Ka M⋅Yu, Tao⋅Yu, Tao⋅T, Yu⋅Yu, Tao⋅Yu, Tao⋅Li, Yujing⋅Li, Yujing⋅Li, Yujing⋅Li, Yujing⋅Y, Li⋅Eyvani, Haniyeh⋅Eyvani, Haniyeh⋅Eyvani, Haniyeh⋅H, Eyvani⋅Eyvani, Haniyeh⋅Colter, Austyn B⋅Colter, Austyn B⋅Colter, Austyn B⋅Colter, Austyn B⋅AB, Colter⋅Dong, Edward⋅E, Dong⋅Dong, Edward⋅Dong, Edward⋅Dong, Edward⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅S, Cao⋅J, Wang⋅Wang, Jin⋅Wang, Jin⋅Wang, Jin⋅Wang, Jin⋅BP, Schneider⋅Schneider, Bryan P⋅Schneider, Bryan P⋅Schneider, Bryan P⋅Schneider, Bryan P⋅Sandusky, George E⋅Sandusky, George E⋅X, Zhang⋅Sandusky, George E⋅Sandusky, George E⋅Liu, Yunlong⋅Liu, Yunlong⋅Liu, Yunlong⋅Liu, Yunlong⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Lu, Xiongbin⋅Lu, Xiongbin⋅Lu, Xiongbin⋅Lu, Xiongbin⋅Zhang, Xinna⋅Zhang, Xinna⋅Zhang, Xinna and Zhang, Xinna
Journal of Clinical Investigation, vol. 131, (no. 1), pp. 1-17, Jan 2021. | Journal Article
 
SSMD: a semi-supervised approach for a robust cell type identification and deconvolution of mouse transcriptomics data.
Lu, Xiaoyu⋅X, Lu⋅Lu, Xiaoyu⋅Tu, Szu-Wei⋅Tu, Szu-Wei⋅SW, Tu⋅Chang, Wennan⋅Chang, Wennan⋅W, Chang⋅Wan, Changlin⋅C, Wan⋅Wan, Changlin⋅Wang, Jiashi⋅J, Wang⋅Wang, Jiashi⋅Zang, Yong⋅Y, Zang⋅Zang, Yong⋅B, Ramdas⋅Ramdas, Baskar⋅Ramdas, Baskar⋅R, Kapur⋅Kapur, Reuben⋅Kapur, Reuben⋅Lu, Xiongbin⋅X, Lu⋅Lu, Xiongbin⋅S, Cao⋅Cao, Sha⋅Cao, Sha⋅Zhang, Chi⋅C, Zhang and Zhang, Chi
Briefings in bioinformatics, vol. 22, (no. 4), July 20, 2021. | Journal Article
 
Supervised clustering of high-dimensional data using regularized mixture modeling.
W, Chang⋅Chang, Wennan⋅Chang, Wennan⋅Wan, Changlin⋅C, Wan⋅Wan, Changlin⋅Zang, Yong⋅Y, Zang⋅Zang, Yong⋅C, Zhang⋅Zhang, Chi⋅Zhang, Chi⋅Cao, Sha⋅S, Cao and Cao, Sha
Briefings in bioinformatics, vol. 22, (no. 4), July 20, 2021. | Journal Article
2020
Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations.
Huang, Zhi⋅Huang, Zhi⋅Huang, Zhi⋅Huang, Zhi⋅Z, Huang⋅Huang, Zhi⋅Huang, Zhi⋅Huang, Zhi⋅Johnson, Travis S⋅Johnson, Travis S⋅Johnson, Travis S⋅Johnson, Travis S⋅Johnson, Travis S⋅TS, Johnson⋅Johnson, Travis S⋅Johnson, Travis S⋅Han, Zhi⋅Han, Zhi⋅Han, Zhi⋅Han, Zhi⋅Z, Han⋅Han, Zhi⋅Han, Zhi⋅Han, Zhi⋅Helm, Bryan⋅Helm, Bryan⋅Helm, Bryan⋅Helm, Bryan⋅Helm, Bryan⋅Helm, Bryan⋅B, Helm⋅Helm, Bryan⋅Cao, Sha⋅S, Cao⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅C, Zhang⋅Zhang, Chi⋅Salama, Paul⋅Salama, Paul⋅Salama, Paul⋅Salama, Paul⋅Salama, Paul⋅Salama, Paul⋅P, Salama⋅Salama, Paul⋅Rizkalla, Maher⋅Rizkalla, Maher⋅Rizkalla, Maher⋅Rizkalla, Maher⋅Rizkalla, Maher⋅M, Rizkalla⋅Rizkalla, Maher⋅Rizkalla, Maher⋅CY, Yu⋅Yu, Christina Y⋅Yu, Christina Y⋅Yu, Christina Y⋅Yu, Christina Y⋅Yu, Christina Y⋅Yu, Christina Y⋅Yu, Christina Y⋅Cheng, Jun⋅J, Cheng⋅Cheng, Jun⋅Cheng, Jun⋅Cheng, Jun⋅Cheng, Jun⋅Cheng, Jun⋅Cheng, Jun⋅Xiang, Shunian⋅Xiang, Shunian⋅Xiang, Shunian⋅Xiang, Shunian⋅S, Xiang⋅Xiang, Shunian⋅Xiang, Shunian⋅Xiang, Shunian⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅X, Zhan⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅J, Zhang⋅Zhang, Jie⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun and K, Huang
BMC medical genomics, vol. 13, pp. 41, April 3, 2020. | Journal Article
 
Genetic disruption of the small GTPase RAC1 prevents plexiform neurofibroma formation in mice with neurofibromatosis type 1
Mund, Julie A⋅Park, SuJung⋅Smith, Abbi E⋅He, Yongzheng⋅Jiang, Li⋅Hawley, Eric⋅Roberson, Michelle J⋅Mitchell, Dana K⋅Abu-Sultanah, Mohannad⋅Yuan, Jin⋅Bessler, Waylan K⋅Sandusky, George⋅Chen, Shi⋅Zhang, Chi⋅Rhodes, Steven D and Clapp, D Wade
The Journal of biological chemistry, vol. 295, (no. 29), pp. 9948-9958, July 17, 2020. | Journal Article
 
Innovating Computational Biology and Intelligent Medicine: ICIBM 2019 Special Issue.
Guo, Yan⋅Guo, Yan⋅Ning, Xia⋅Ning, Xia⋅Mathé, Ewy⋅Mathé, Ewy⋅Wang, Kai⋅Wang, Kai⋅Li, Lang⋅Li, Lang⋅Zhang, Chi⋅Zhang, Chi⋅Zhao, Zhongming and Zhao, Zhongming
Genes, vol. 11, (no. 4), April 17, 2020. | Journal Article
 
QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data.
Xie, Juan⋅Xie, Juan⋅J, Xie⋅Ma, Anjun⋅A, Ma⋅Ma, Anjun⋅Y, Zhang⋅Zhang, Yu⋅Zhang, Yu⋅Liu, Bingqiang⋅Liu, Bingqiang⋅B, Liu⋅S, Cao⋅Cao, Sha⋅Cao, Sha⋅C, Wang⋅Wang, Cankun⋅Wang, Cankun⋅Xu, Jennifer⋅Xu, Jennifer⋅J, Xu⋅C, Zhang⋅Zhang, Chi⋅Zhang, Chi⋅Q, Ma⋅Ma, Qin and Ma, Qin
Bioinformatics (Oxford, England), vol. 36, (no. 4), pp. 1143-1149, February 15, 2020. | Journal Article
 
Retinal Ganglion Cells With a Glaucoma OPTN(E50K) Mutation Exhibit Neurodegenerative Phenotypes when Derived from Three-Dimensional Retinal Organoids.
VanderWall, Kirstin B⋅Huang, Kang-Chieh⋅Pan, Yanling⋅Lavekar, Sailee S⋅Fligor, Clarisse M⋅Allsop, Anna R⋅Lentsch, Kelly A⋅Dang, Pengtao⋅Zhang, Chi⋅Tseng, Henry C⋅Cummins, Theodore R and Meyer, Jason S
Stem cell reports, vol. 15, (no. 1), pp. 52-66, July 14, 2020. | Journal Article
 
Role of lncRNA Morrbid in PTPN11(Shp2)E76K-driven juvenile myelomonocytic leukemia.
Cai, Zhigang⋅Cai, Zhigang⋅Cai, Zhigang⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Kotzin, Jonathan J⋅Kotzin, Jonathan J⋅Kotzin, Jonathan J⋅Williams, Adam⋅Williams, Adam⋅Williams, Adam⋅Henao-Mejia, Jorge⋅Henao-Mejia, Jorge⋅Henao-Mejia, Jorge⋅Kapur, Reuben⋅Kapur, Reuben and Kapur, Reuben
Blood advances, vol. 4, (no. 14), pp. 3246-3251, July 28, 2020. | Journal Article
 
Selumetinib in Children with Inoperable Plexiform Neurofibromas
Gross, Andrea M⋅Gross, Andrea M⋅Gross, Andrea M⋅Gross, Andrea M⋅Wolters, Pamela L⋅Wolters, Pamela L⋅Wolters, Pamela L⋅Wolters, Pamela L⋅Dombi, Eva⋅Dombi, Eva⋅Dombi, Eva⋅Dombi, Eva⋅Baldwin, Andrea⋅Baldwin, Andrea⋅Baldwin, Andrea⋅Baldwin, Andrea⋅Whitcomb, Patricia⋅Whitcomb, Patricia⋅Whitcomb, Patricia⋅Whitcomb, Patricia⋅Fisher, Michael J⋅Fisher, Michael J⋅Fisher, Michael J⋅Fisher, Michael J⋅Weiss, Brian⋅Weiss, Brian⋅Weiss, Brian⋅Weiss, Brian⋅Kim, AeRang⋅Kim, AeRang⋅Kim, Ae Rang⋅Kim, AeRang⋅Shah, Amish C⋅Shah, Amish C⋅Shah, Amish C⋅Shah, Amish C⋅Martin, Staci⋅Martin, Staci⋅Martin, Staci⋅Martin, Staci⋅Roderick, Marie C⋅Roderick, Marie C⋅Roderick, Marie C⋅Roderick, Marie C⋅Pichard, Dominique C⋅Pichard, Dominique C⋅Pichard, Dominique C⋅Pichard, Dominique C⋅Carbonell, Amanda⋅Carbonell, Amanda⋅Carbonell, Amanda⋅Carbonell, Amanda⋅Paul, Scott M⋅Paul, Scott M⋅Paul, Scott M⋅Paul, Scott M⋅Therrien, Janet⋅Therrien, Janet⋅Therrien, Janet⋅Therrien, Janet⋅Wade, Clapp D⋅Wade, Clapp D⋅Wade, Clapp D⋅Wade, Clapp D⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Peer, Cody J⋅Peer, Cody J⋅Peer, Cody J⋅Peer, Cody J⋅Figg, William D⋅Figg, William D⋅Figg, William D⋅Figg, William D⋅Smith, Malcolm⋅Smith, Malcolm⋅Smith, Malcolm⋅Smith, Malcolm⋅Glod, John⋅Glod, John⋅Glod, John⋅Glod, John⋅Blakeley, Jaishri O⋅Blakeley, Jaishri O⋅Blakeley, Jaishri O⋅Blakeley, Jaishri O⋅Steinberg, Seth M⋅Steinberg, Seth M⋅Steinberg, Seth M⋅Steinberg, Seth M⋅Austin, Doyle L⋅Austin, Doyle L⋅Austin, Doyle L⋅Austin, Doyle L⋅Widemann, Brigitte C⋅Widemann, Brigitte C⋅Widemann, Brigitte C and Widemann, Brigitte C
The New England Journal of Medicine, vol. 382, (no. 15), pp. 1430-1442, Apr 9, 2020. | Journal Article
 
Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer.
Chen, Jian⋅Tan, Yun⋅Sun, Fenghuan⋅Hou, Likun⋅Zhang, Chi⋅Ge, Tao⋅Yu, Huansha⋅Wu, Chunxiao⋅Zhu, Yuming⋅Duan, Liang⋅Wu, Liang⋅Song, Nan⋅Zhang, Liping⋅Zhang, Wei⋅Wang, Di⋅Chen, Chang⋅Wu, Chunyan⋅Jiang, Gening and Zhang, Peng
Genome biology, vol. 21, (no. 1), pp. 152, June 24, 2020. | Journal Article
 
ST2 as checkpoint target for colorectal cancer immunotherapy.
Van der Jeught, Kevin⋅Van der Jeught, Kevin⋅Van der Jeught, Kevin⋅Van der Jeught, Kevin⋅Sun, Yifan⋅Sun, Yifan⋅Sun, Yifan⋅Sun, Yifan⋅Fang, Yuanzhang⋅Fang, Yuanzhang⋅Fang, Yuanzhang⋅Fang, Yuanzhang⋅Zhou, Zhuolong⋅Zhou, Zhuolong⋅Zhou, Zhuolong⋅Zhou, Zhuolong⋅Jiang, Hua⋅Jiang, Hua⋅Jiang, Hua⋅Jiang, Hua⋅Yu, Tao⋅Yu, Tao⋅Yu, Tao⋅Yu, Tao⋅Yang, Jinfeng⋅Yang, Jinfeng⋅Yang, Jinfeng⋅Yang, Jinfeng⋅Kamocka, Malgorzata M⋅Kamocka, Malgorzata M⋅Kamocka, Malgorzata M⋅Kamocka, Malgorzata M⋅So, Ka Man⋅So, Ka Man⋅So, Ka Man⋅So, Ka Man⋅Li, Yujing⋅Li, Yujing⋅Li, Yujing⋅Li, Yujing⋅Eyvani, Haniyeh⋅Eyvani, Haniyeh⋅Eyvani, Haniyeh⋅Eyvani, Haniyeh⋅Sandusky, George E⋅Sandusky, George E⋅Sandusky, George E⋅Sandusky, George E⋅Frieden, Michael⋅Frieden, Michael⋅Frieden, Michael⋅Frieden, Michael⋅Braun, Harald⋅Braun, Harald⋅Braun, Harald⋅Braun, Harald⋅Beyaert, Rudi⋅Beyaert, Rudi⋅Beyaert, Rudi⋅Beyaert, Rudi⋅He, Xiaoming⋅He, Xiaoming⋅He, Xiaoming⋅He, Xiaoming⋅Zhang, Xinna⋅Zhang, Xinna⋅Zhang, Xinna⋅Zhang, Xinna⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Paczesny, Sophie⋅Lu, Xiongbin⋅Lu, Xiongbin⋅Lu, Xiongbin and Lu, Xiongbin
JCI insight, vol. 5, (no. 9), May 7, 2020. | Journal Article
 
Targeting Bim via a lncRNA Morrbid Regulates the Survival of Preleukemic and Leukemic Cells.
Cai, Zhigang⋅Cai, Zhigang⋅Aguilera, Fabiola⋅Aguilera, Fabiola⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Daulatabad, Swapna Vidhur⋅Daulatabad, Swapna Vidhur⋅Srivastava, Rajneesh⋅Srivastava, Rajneesh⋅Kotzin, Jonathan J⋅Kotzin, Jonathan J⋅Carroll, Martin⋅Carroll, Martin⋅Wertheim, Gerald⋅Wertheim, Gerald⋅Williams, Adam⋅Williams, Adam⋅Janga, Sarath Chandra⋅Janga, Sarath Chandra⋅Zhang, Chi⋅Zhang, Chi⋅Henao-Mejia, Jorge⋅Henao-Mejia, Jorge⋅Kapur, Reuben and Kapur, Reuben
Cell reports, vol. 31, (no. 12), pp. 107816, June 23, 2020. | Journal Article
 
The International Conference on Intelligent Biology and Medicine 2019 (ICIBM 2019): computational methods and applications in medical genomics.
Zhang, Chi⋅Zhang, Chi⋅Mathé, Ewy⋅Mathé, Ewy⋅Ning, Xia⋅Ning, Xia⋅Zhao, Zhongming⋅Zhao, Zhongming⋅Wang, Kai⋅Wang, Kai⋅Li, Lang⋅Li, Lang⋅Guo, Yan and Guo, Yan
BMC medical genomics, vol. 13, pp. 47, April 3, 2020. | Journal Article
2019
Antitumor Activity and Mechanistic Characterization of APE1/Ref-1 Inhibitors in Bladder Cancer.
Fishel, Melissa L⋅Fishel, Melissa L⋅Fishel, Melissa L⋅Fishel, Melissa L⋅Fishel, Melissa L⋅Fishel, Melissa L⋅Fishel, Melissa L⋅Fishel, Melissa L⋅Xia, Hanyu⋅Xia, Hanyu⋅Xia, Hanyu⋅Xia, Hanyu⋅Xia, Hanyu⋅Xia, Hanyu⋅Xia, Hanyu⋅Xia, Hanyu⋅McGeown, Jack⋅McGeown, Jack⋅McGeown, Jack⋅McGeown, Jack⋅McGeown, Jack⋅McGeown, Jack⋅McGeown, Jack⋅McGeown, Jack⋅McIlwain, David W⋅McIlwain, David W⋅McIlwain, David W⋅McIlwain, David W⋅McIlwain, David W⋅McIlwain, David W⋅McIlwain, David W⋅McIlwain, David W⋅Elbanna, May⋅Elbanna, May⋅Elbanna, May⋅Elbanna, May⋅Elbanna, May⋅Elbanna, May⋅Elbanna, May⋅Elbanna, May⋅Craft, Ariel A⋅Craft, Ariel A⋅Craft, Ariel A⋅Craft, Ariel A⋅Craft, Ariel A⋅Craft, Ariel A⋅Craft, Ariel A⋅Craft, Ariel A⋅Kaimakliotis, Hristos Z⋅Kaimakliotis, Hristos Z⋅Kaimakliotis, Hristos Z⋅Kaimakliotis, Hristos Z⋅Kaimakliotis, Hristos Z⋅Kaimakliotis, Hristos Z⋅Kaimakliotis, Hristos Z⋅Kaimakliotis, Hristos Z⋅Sandusky, George E⋅Sandusky, George E⋅Sandusky, George E⋅Sandusky, George E⋅Sandusky, George E⋅Sandusky, George E⋅Sandusky, George E⋅Sandusky, George E⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Pili, Roberto⋅Pili, Roberto⋅Pili, Roberto⋅Pili, Roberto⋅Pili, Roberto⋅Pili, Roberto⋅Pili, Roberto⋅Pili, Roberto⋅Kelley, Mark R⋅Kelley, Mark R⋅Kelley, Mark R⋅Kelley, Mark R⋅Kelley, Mark R⋅Kelley, Mark R⋅Kelley, Mark R⋅Kelley, Mark R⋅Jerde, Travis J⋅Jerde, Travis J⋅Jerde, Travis J⋅Jerde, Travis J⋅Jerde, Travis J⋅Jerde, Travis J⋅Jerde, Travis J and Jerde, Travis J
Molecular cancer therapeutics, vol. 18, (no. 11), pp. 1947-1960, November 2019. | Journal Article
 
CD166 Engagement Augments Mouse and Human Hematopoietic Progenitor Function via Activation of Stemness and Cell Cycle Pathways.
Zhang, Jing⋅Zhang, Jing⋅Zhang, Jing⋅Zhang, Jing⋅Zhang, Jing⋅Ghosh, Joydeep⋅Ghosh, Joydeep⋅Ghosh, Joydeep⋅Ghosh, Joydeep⋅Ghosh, Joydeep⋅Mohamad, Safa F⋅Mohamad, Safa F⋅Mohamad, Safa F⋅Mohamad, Safa F⋅Mohamad, Safa F⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Huang, Xinxin⋅Huang, Xinxin⋅Huang, Xinxin⋅Huang, Xinxin⋅Huang, Xinxin⋅Capitano, Maegan L⋅Capitano, Maegan L⋅Capitano, Maegan L⋅Capitano, Maegan L⋅Capitano, Maegan L⋅Gunawan, Andrea M⋅Gunawan, Andrea M⋅Gunawan, Andrea M⋅Gunawan, Andrea M⋅Gunawan, Andrea M⋅Cooper, Scott⋅Cooper, Scott⋅Cooper, Scott⋅Cooper, Scott⋅Cooper, Scott⋅Guo, Bin⋅Guo, Bin⋅Guo, Bin⋅Guo, Bin⋅Guo, Bin⋅Cai, Qingchun⋅Cai, Qingchun⋅Cai, Qingchun⋅Cai, Qingchun⋅Cai, Qingchun⋅Broxmeyer, Hal E⋅Broxmeyer, Hal E⋅Broxmeyer, Hal E⋅Broxmeyer, Hal E⋅Broxmeyer, Hal E⋅Srour, Edward F⋅Srour, Edward F⋅Srour, Edward F⋅Srour, Edward F and Srour, Edward F
Stem cells (Dayton, Ohio), vol. 37, (no. 10), pp. 1319-1330, October 2019. | Journal Article
 
DTA-SiST: de novo transcriptome assembly by using simplified suffix trees
Zhao, Jin⋅Zhao, Jin⋅Feng, Haodi⋅Feng, Haodi⋅Zhu, Daming⋅Zhu, Daming⋅Zhang, Chi⋅Zhang, Chi⋅Xu, Ying and Xu, Ying
BMC Bioinformatics , vol. 20(Suppl 25), pp. 1-12, 2019. | Journal Article
 
M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data
Zhang, Yu⋅Zhang, Yu⋅Y, Zhang⋅Wan, Changlin⋅C, Wan⋅Wan, Changlin⋅P, Wang⋅Wang, Pengcheng⋅Wang, Pengcheng⋅Chang, Wennan⋅Chang, Wennan⋅W, Chang⋅Y, Huo⋅Huo, Yan⋅Huo, Yan⋅J, Chen⋅Chen, Jian⋅Chen, Jian⋅Ma, Qin⋅Ma, Qin⋅Q, Ma⋅S, Cao⋅Cao, Sha⋅Cao, Sha⋅C, Zhang⋅Zhang, Chi and Zhang, Chi
BMC Bioinformatics , vol. 20(Suppl 24), pp. 1-5, 2019. | Journal Article
 
RegSNPs-intron: a computational framework for predicting pathogenic impact of intronic single nucleotide variants
Lin, Hai⋅Lin, Hai⋅Lin, Hai⋅Lin, Hai⋅Lin, Hai⋅Hargreaves, Katherine A⋅Hargreaves, Katherine A⋅Hargreaves, Katherine A⋅Hargreaves, Katherine A⋅Hargreaves, Katherine A⋅Li, Rudong⋅Li, Rudong⋅Li, Rudong⋅Li, Rudong⋅Li, Rudong⋅Reiter, Jill L⋅Reiter, Jill L⋅Reiter, Jill L⋅Reiter, Jill L⋅Reiter, Jill L⋅Wang, Yue⋅Wang, Yue⋅Wang, Yue⋅Wang, Yue⋅Wang, Yue⋅Mort, Matthew⋅Mort, Matthew⋅Mort, Matthew⋅Mort, Matthew⋅Mort, Matthew⋅Cooper, David N⋅Cooper, David N⋅Cooper, David N⋅Cooper, David N⋅Cooper, David N⋅Zhou, Yaoqi⋅Zhou, Yaoqi⋅Zhou, Yaoqi⋅Zhou, Yaoqi⋅Zhou, Yaoqi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Eadon, Michael T⋅Eadon, Michael T⋅Eadon, Michael T⋅Eadon, Michael T⋅Eadon, Michael T⋅Dolan, M Eileen⋅Dolan, M Eileen⋅Dolan, M E⋅Dolan, M Eileen⋅Dolan, M E⋅Ipe, Joseph⋅Ipe, Joseph⋅Ipe, Joseph⋅Ipe, Joseph⋅Ipe, Joseph⋅Skaar, Todd C⋅Skaar, Todd C⋅Skaar, Todd C⋅Skaar, Todd C⋅Skaar, Todd C⋅Liu, Yunlong⋅Liu, Yunlong⋅Liu, Yunlong⋅Liu, Yunlong and Liu, Yunlong
Genome Biology, vol. 20, (no. 1), pp. 254, 2019-11-28. | Journal Article
 
SHP2 inhibition reduces leukemogenesis in models of combined genetic and epigenetic mutations.
Pandey, Ruchi⋅Pandey, Ruchi⋅Pandey, Ruchi⋅Pandey, Ruchi⋅Pandey, Ruchi⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Ramdas, Baskar⋅Wan, Changlin⋅Wan, Changlin⋅Wan, Changlin⋅Wan, Changlin⋅Wan, Changlin⋅Sandusky, George⋅Sandusky, George⋅Sandusky, George⋅Sandusky, George⋅Sandusky, George⋅Mohseni, Morvarid⋅Mohseni, Morvarid⋅Mohseni, Morvarid⋅Mohseni, Morvarid⋅Mohseni, Morvarid⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Kapur, Reuben⋅Kapur, Reuben⋅Kapur, Reuben⋅Kapur, Reuben and Kapur, Reuben
The Journal of clinical investigation, vol. 129, (no. 12), pp. 5468-5473, December 2, 2019. | Journal Article
 
The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases
Zhao, Zhongming⋅Dai, Yulin⋅Zhang, Chi⋅Mathé, Ewy⋅Wei, Lai and Wang, Kai
BMC Bioinformatics, vol. 20, (no. Suppl 24), pp. 676, 2019-12-20. | Journal Article
2018
Three-Dimensional Retinal Organoids Facilitate the Investigation of Retinal Ganglion Cell Development, Organization and Neurite Outgrowth from Human Pluripotent Stem Cells
Fligor, Clarisse M⋅Fligor, Clarisse M⋅Fligor, Clarisse M⋅Fligor, Clarisse M⋅Langer, Kirstin B⋅Langer, Kirstin B⋅Langer, Kirstin B⋅Langer, Kirstin B⋅Sridhar, Akshayalakshmi⋅Sridhar, Akshayalakshmi⋅Ren, Yuan⋅Ren, Yuan⋅Ren, Yuan⋅Ren, Yuan⋅Shields, Priya K⋅Shields, Priya K⋅Shields, Priya K⋅Shields, Priya K⋅Edler, Michael C⋅Edler, Michael C⋅Edler, Michael C⋅Edler, Michael C⋅Ohlemacher, Sarah K⋅Ohlemacher, Sarah K⋅Ohlemacher, Sarah K⋅Ohlemacher, Sarah K⋅Sluch, Valentin M⋅Sluch, Valentin M⋅Sluch, Valentin M⋅Sluch, Valentin M⋅Zack, Donald J⋅Zack, Donald J⋅Zack, Donald J⋅Zack, Donald J⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅others⋅Suter, Daniel M⋅Suter, Daniel M⋅Suter, Daniel M⋅Meyer, Jason S⋅Meyer, Jason S and Meyer, Jason S
Scientific Reports (Nature Publisher Group), vol. 8, pp. 1-14, Sep 2018. | Journal Article
2017
Competition between DNA Methylation, Nucleotide Synthesis, and Antioxidation in Cancer versus Normal Tissues
S, Cao⋅Cao, Sha⋅Zhu, Xiwen⋅X, Zhu⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅C, Zhang⋅Qian, Hong⋅Qian, Hong⋅H, Qian⋅Qian, Hong⋅HB, Schuttler⋅Schuttler, Heinz-Bernd⋅Heinz-Bernd, Schuttler⋅Heinz-Bernd, Schuttler⋅Gong, Jianping⋅J, Gong⋅Xu, Ying⋅Xu, Ying⋅Xu, Ying and Y, Xu
Cancer Research, vol. 77, (no. 15), pp. 4185-4195, Aug 1, 2017. | Journal Article
2016
Genome-Scale Identification of Cell-Wall-Related Genes in Switchgrass through Comparative Genomics and Computational Analyses of Transcriptomic Data
Chen, Xin⋅Chen, Xin⋅Ma, Qin⋅Ma, Qin⋅Rao, Xiaolan⋅Rao, Xiaolan⋅Tang, Yuhong⋅Tang, Yuhong⋅Wang, Yan⋅Wang, Yan⋅Li, Gaoyang⋅Li, Gaoyang⋅Zhang, Chi⋅Zhang, Chi⋅Mao, Xizeng⋅Mao, Xizeng⋅Dixon, Richard⋅Dixon, Richard A⋅Xu, Ying and Xu, Ying
Bioenergy Research, vol. 9, (no. 1), pp. 172-180, Mar 2016. | Journal Article