24 Publications
2019
Genome assembly of the A-group Wolbachia in Nasonia oneida using linked-reads technology
Wang, XiaozhuXiong, XiaoCao, WenqiZhang, ChaoWerren, John H and Wang, Xu
Genome Biology and Evolution. | Journal Article
 
Hypothalamic transcriptome of tame and aggressive silver foxes (Vulpes vulpes) identifies gene expression differences shared across brain regions.
Genes, brain, and behavior. | Journal Article
2018
Genome assembly of the A-group Wolbachia in Nasonia oneida and phylogenomic analysis of Wolbachia strains revealed genome evolution and lateral gene transfer
 
Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours
Kukekova, Anna V.Johnson, Jennifer L.Xiang, XueyanFeng, ShaohongLiu, ShipingRando, Halie M.Kharlamova, Anastasiya V.Herbeck, YurySerdyukova, Natalya A.Xiong, ZijunBeklemischeva, ViolettaKoepfli, Klaus-PeterGulevich, Rimma G.Vladimirova, Anastasiya V.Hekman, Jessica P.Perelman, Polina L.Graphodatsky, Aleksander S.O’Brien, Stephen J.Wang, XuClark, Andrew G.Acland, Gregory M.Trut, Lyudmila N. and Zhang, Guojie
Nature Ecology & Evolution, vol. 2, pp. 1479–1491. | Journal Article
 
TIVAN: Tissue-specific cis-eQTL single nucleotide variant annotation and prediction
Chen, LiChen, LiChen, LiWang, YeWang, YeWang, YeYao, BingYao, BingYao, BingMitra, AmitMitra, AmitMitra, AmitWang, XuWang, XuWang, XuQin, XiaoQin, Xiao and Qin, Xiao
Bioinformatics. | Journal Article
2017
Genomic imprinting does not reduce the dosage of UBE3A in neurons
Hillman, Paul R.Christian, Sarah G. B.Doan, RyanCohen, Noah D.Konganti, KrantiDouglas, KoryWang, XuSamollow, Paul B. and Dindot, Scott V.
Epigenetics & Chromatin, vol. 10. | Journal Article
 
Genomic responses to selection for tame/aggressive behaviors in the silver fox (Vulpes vulpes)
Wang, XuPipes, LenoreTrut, Lyudmila N.Herbeck, YuryVladimirova, Anastasiya V.Gulevich, Rimma G.Kharlamova, Anastasiya V.Johnson, Jennifer L.Acland, Gregory M.Kukekova, Anna V. and Clark, Andrew G.
Cold Spring Harbor Laboratory
2016
Allele-Specific Transcriptome and Methylome Analysis Reveals Stable Inheritance and Cis-Regulation of DNA Methylation in Nasonia.
Wang, XuWerren, John H and Clark, Andrew G
PLoS biology, vol. 14, (no. 7), pp. e1002500, July 2016. | Journal Article
 
OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis
Rago, AlfredoGilbert, Donald G.Choi, Jeong-HyeonSackton, Timothy B.Wang, XuKelkar, Yogeshwar D.Werren, John H. and Colbourne, John K.
Bmc Genomics, vol. 17. | Journal Article
2015
Genetic and epigenetic architecture of sex-biased expression in the jewel wasps Nasonia vitripennis and giraulti.
Wang, XuWerren, John H and Clark, Andrew G
Proceedings of the National Academy of Sciences of the United States of America, vol. 112, (no. 27), pp. E3545-E3554, July 7, 2015. | Journal Article
 
The genetic architecture of the genome-wide transcriptional response to ER stress in the mouse.
Chow, Clement YWang, XuRiccardi, DavidWolfner, Mariana F and Clark, Andrew G
PLoS genetics, vol. 11, (no. 2), pp. e1004924, February 2015. | Journal Article
 
TRIM28 Controls Genomic Imprinting through Distinct Mechanisms during and after Early Genome-wide Reprogramming.
Alexander, Katherine AWang, XuShibata, MahoClark, Andrew GGarcía-García, María J and Garcia-Garcia, Maria J.
Cell reports, vol. 13, (no. 6), pp. 1194-1205, November 10, 2015. | Journal Article
2014
Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica.
Wang, XuDouglas, Kory CVandeberg, John LVandeBerg, John L.Clark, Andrew G and Samollow, Paul
Genome research, vol. 24, (no. 1), pp. 70-83, 2014/Jan. | Journal Article
 
Genome-wide histone state profiling of fibroblasts from the opossum, Monodelphis domestica, identifies the first marsupial-specific imprinted gene.
Douglas, Kory CWang, XuJasti, MadhuriWolff, AbigailVandeberg, John LVandeBerg, John L.Clark, Andrew G and Samollow, Paul
BMC genomics, vol. 15, (no. 1), pp. 89, 2014. | Journal Article
 
Using next-generation RNA sequencing to identify imprinted genes
Wang, X and Clark, A
Heredity, vol. 113, (no. 2), pp. 156-66, Aug 2014. | Journal Article
2013
Function and evolution of DNA methylation in Nasonia vitripennis.
Wang, XuWheeler, David AAvery, AmandaRago, AlfredoChoi, Jeong-HyeonColbourne, John KClark, Andrew G and Werren, John H
PLoS genetics, vol. 9, (no. 10), pp. e1003872, 2013. | Journal Article
 
Paternally expressed genes predominate in the placenta
Wang, XuMiller, Donald CHarman, RebeccaAntczak, Doug and Clark, Andrew
Proceedings of the National Academy of Sciences of the United States of America, vol. 110, (no. 26), Jun 25, 2013. | Journal Article
2012
Random X inactivation in the mule and horse placenta.
Wang, XuMiller, Donald CClark, Andrew G and Antczak, Doug
Genome research, vol. 22, (no. 10), pp. 1855-63, 2012/Oct. | Journal Article
2011
A survey for novel imprinted genes in the mouse placenta by mRNA-seq.
Wang, XuSoloway, Paul D and Clark, Andrew G
Genetics, vol. 189, (no. 1), pp. 109-22, 2011/Sep. | Journal Article
2010
Contrasting methods of quantifying fine structure of human recombination.
Clark, Andrew GWang, XuMatise, Tara CChakravarti, A and Green, E
Annual review of genomics and human genetics, vol. 11, pp. 45-64, 2010. | Journal Article
 
Paternally biased X inactivation in mouse neonatal brain
Wang, XuSoloway, Paul and Clark, Andrew
Genome Biology, vol. 11, (no. 7), pp. R79-R79, 2010. | Journal Article
2008
A genome-wide approach to identifying novel-imprinted genes.
Pollard, KatieSerre, DavidWang, XuTao, HengGrundberg, ElinHudson, TomClark, Andrew G and Frazer, Kelly
Human genetics, vol. 122, (no. 6), pp. 625-34, 2008/Jan. | Journal Article
 
Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain
Wang, XuSun, QiMcGrath, Sean DMardis, Elaine RSoloway, PaulClark, Andrew and Ferguson-Smith, Anne C
PloS ONE, vol. 3, (no. 12), pp. e3839, 2008. | Journal Article
2006
Two Dobzhansky-Muller Genes Interact to Cause Hybrid Lethality in Drosophila
Brideau, Nicholas JFlores, Heather AWang, JunMaheshwari, ShamoniWang, Xu and Barbash, Daniel
Science., vol. 314, (no. 5803), pp. 1292-1295, 2006. | Journal Article