167 Publications (Page 5 of 7)
2010
Gene copy-number polymorphism in nature.
Schrider, Daniel and Hahn, Matthew
Proceedings. Biological sciences / The Royal Society, vol. 277, (no. 1698), pp. 3213-21, 2010/Nov/7. | Journal Article
 
Genomic islands of speciation or genomic islands and speciation?
Turner, Thomas L and Hahn, Matthew
Molecular Ecology, vol. 19, (no. 5), pp. 848-850, Mar 2010. | Journal Article
 
Lower linkage disequilibrium at CNVs is due to both recurrent mutation and transposing duplications.
Schrider, Daniel and Hahn, Matthew
Molecular biology and evolution, vol. 27, (no. 1), pp. 103-11, 2010/Jan. | Journal Article
 
Nonallelic Gene Conversion in the Genus Drosophila
Casola, Claudio⋅Ganote, Carrie L and Hahn, Matthew
Genetics, vol. 185, (no. 1), pp. 95-103, May 2010. | Journal Article
 
Noncoding Sequences Near Duplicated Genes Evolve Rapidly
Kostka, Dennis⋅Kostka, Dennis⋅Hahn, Matthew W⋅Hahn, Matthew W⋅Pollard, Katherine S and Pollard, Katie
Genome biology and evolution, vol. 2, pp. 533, 2010-00-00. | Journal Article
 
Retrogenes Reveal the Direction of Sex-Chromosome Evolution in Mosquitoes
Toups, Melissa A and Hahn, Matthew
Genetics, vol. 186, (no. 2), pp. 763-766, Oct 2010. | Journal Article
 
The contribution of gene movement to the "two rules of speciation".
Moyle, Leonie⋅Muir, Christopher D⋅Han, Mira and Hahn, Matthew
Evolution; international journal of organic evolution, vol. 64, (no. 6), pp. 1541-57, 2010/Jun. | Journal Article
 
The strength of transcription-factor binding modulates co-variation in transcriptional networks
Nuzhdin, V. S⋅Rychkova, Anna and Hahn, Matthew
Trends in Genetics, vol. 26, (no. 2), pp. 51-53, 2010. | Journal Article
2009
A complex suite of forces drives gene traffic from Drosophila X chromosomes.
Meisel, Richard P⋅Meisel, Rich P⋅Han, Mira V⋅Han, Mira V⋅Hahn, Matthew and Hahn, Matthew W
Genome biology and evolution, vol. 2009, pp. 176-88, 2009. | Journal Article
 
Adaptive evolution of young gene duplicates in mammals.
Han, Mira⋅Han, Mira V⋅Demuth, Jeff⋅Demuth, Jeffery P⋅McGrath, Casey L⋅McGrath, Casey L⋅Casola, Claudio⋅Casola, Claudio⋅Hahn, Matthew W and Hahn, Matthew
Genome research, vol. 19, (no. 5), pp. 859-67, 2009/May. | Journal Article
 
All human-specific gene losses are present in the genome as pseudogenes.
Schrider, Daniel⋅Costello, James C and Hahn, Matthew
Journal of computational biology : a journal of computational molecular cell biology, vol. 16, (no. 10), pp. 1419-27, 2009/Oct. | Journal Article
 
Distinguishing Among Evolutionary Models for the Maintenance of Gene Duplicates
Hahn, Matthew
The Journal of Heredity, vol. 100, (no. 5), pp. 605-617, 2009. | Journal Article
 
Gene Conversion Among Paralogs Results in Moderate False Detection of Positive Selection Using Likelihood Methods
Casola, Claudio⋅Casola, Claudio⋅Hahn, Matthew and Hahn, Matthew W
Journal of Molecular Evolution, vol. 68, (no. 6), pp. 679-687, 2009. | Journal Article
 
Identifying parent-daughter relationships among duplicated genes.
Han, Mira and Hahn, Matthew
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pp. 114-25, 2009. | Journal Article
 
Minimal Effect of Ectopic Gene Conversion Among Recent Duplicates in Four Mammalian Genomes
McGrath, Casey L⋅Casola, Claudio and Hahn, Matthew
Genetics, vol. 182, (no. 2), pp. 615-20SI, Jun 2009. | Journal Article
 
The life and death of gene families
Demuth, Jeff and Hahn, Matthew
BioEssays., vol. 31, (no. 1), pp. 29-39, 2009. | Journal Article
2008
Abundant genetic variation in transcript level during early Drosophila development
Nuzhdin, Sergey V⋅Tufts, Danielle M and Hahn, Matthew
Evolution and Development, vol. 10, (no. 6), pp. 683-689, Nov 2008. | Journal Article
 
Differential gene expression in incipient species of Anopheles gambiae
CASSONE, BRYAN J⋅MOULINE, KARINE⋅Hahn, Matthew⋅White, Bradley⋅POMBI, MARCO⋅SIMARD, FREDERIC⋅COSTANTINI, CARLO and Besansky, Nora J
Molecular Ecology, vol. 17, (no. 10), pp. 2491-2504, May 2008. | Journal Article
 
Gain and loss of phosphorylation sites in human cancer
Radivojac, Predrag⋅Baenziger, Peter H⋅Kann, Maricel⋅Mort, Matthew E⋅Hahn, Matthew and Mooney, Sean D
Bioinformatics, vol. 24, (no. 16), pp. i241-7, Aug 15, 2008. | Journal Article
 
"Reverse ecology" and the power of population genomics.
Li, Yong F⋅Costello, James C⋅Holloway, Alisha K and Hahn, Matthew
Evolution; international journal of organic evolution, vol. 62, (no. 12), pp. 2984-94, 2008/Dec. | Journal Article
 
Toward a Selection Theory of Molecular Evolution
Hahn, Matthew and Rausher, Mark D
Evolution, vol. 62, (no. 2), pp. 255-265, 2008. | Journal Article
2007
Accelerated Rate of Gene Gain and Loss in Primates
Hahn, Matthew⋅Demuth, Jeff and Han, Sang-Gook
Genetics, vol. 177, (no. 3), pp. 1941-9, Nov 2007. | Journal Article
 
Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution.
Hahn, Matthew
Genome Biology [NLM - MEDLINE], vol. 8, (no. 7), pp. R141, 2007. | Journal Article
 
Detecting natural selection on cis-regulatory DNA
Hahn, Matthew
Genetica, vol. 129, (no. 1), pp. 7-18, 2007. | Journal Article
 
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Stark, Alexander⋅Lin, Michael F⋅Kheradpour, Pouya⋅Pedersen, Jakob S⋅Parts, Leopold⋅Carlson, Joseph W⋅Crosby, Madeline A⋅Rasmussen, Matthew D⋅Roy, Sushmita⋅Deoras, Ameya N⋅Ruby, J G⋅Brennecke, Julius⋅Hodges, Emily⋅Hinrichs, Angie S⋅Caspi, Anat⋅Hodges, Emily⋅Hinrichs, Angie S⋅Paten, Benedict⋅Caspi, Anat⋅Park, Seung-Won⋅Paten, Benedict⋅Han, Mira⋅Park, Seung-Won⋅Maeder, Morgan L⋅Han, Mira V⋅Polansky, Benjamin J⋅Robson, Bryanne E⋅Maeder, Morgan L⋅Aerts, Stein⋅Polansky, Benjamin J⋅van Helden, Jacques⋅Robson, Bryanne E⋅Hassan, Bassem⋅Aerts, Stein⋅Gilbert, Donald G⋅van Helden, Jacques⋅Hassan, Bassem⋅Eastman, Deborah A⋅Gilbert, Donald G⋅Rice, Michael D⋅Weir, Michael P⋅Eastman, Deborah A⋅Rice, Michael⋅Hahn, Matthew⋅Weir, Michael⋅Park, Yongkyu⋅Hahn, Matthew W⋅Dewey, Colin N⋅Pachter, Lior⋅Park, Yongkyu⋅Dewey, Colin N⋅Kent, W J⋅Haussler, David⋅Pachter, Lior⋅Lai, Eric⋅Kent, W James⋅Bartel, David P⋅Haussler, David⋅Hannon, Greg⋅Lai, Eric C⋅Kaufman, Thomas C⋅Bartel, David P⋅Eisen, Michael B⋅Hannon, Gregory J⋅Kaufman, Thomas C⋅Clark, Andrew G⋅Smith, Douglas⋅Eisen, Michael B⋅Clark, Andrew G⋅Celniker, Susan E⋅Smith, Douglas⋅Gelbart, William M⋅Celniker, Susan E⋅Kellis, Manolis⋅Gelbart, William M and Kellis, Manolis
Nature, vol. 450, (no. 7167), pp. 219-32, 2007/Nov/8. | Journal Article