167 Publications (Page 4 of 7)
2013
Complex speciation process in the Anopheles gambiae species complex revealed by whole genome sequencing
Fontaine, Michael⋅Steele, Aaron⋅Emrich, Scott⋅Smith, Hilary⋅Hahn, Matthew and Besansky, Nora
Pathogens and Global Health, vol. 107, (no. 8), pp. 429, 2013-12. | Journal Article
 
Detecting highly differentiated copy-number variants from pooled population sequencing.
Schrider, Daniel⋅Begun, David J and Hahn, Matthew
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pp. 344-55, 2013. | Journal Article
 
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
Han, Mira⋅Thomas, Gregg W⋅Lugo-Martinez, Jose and Hahn, Matthew
Molecular Biology and Evolution, vol. 30, (no. 8), pp. 1987-1997, 2013. | Journal Article
 
Gene copy-number polymorphism caused by retrotransposition in humans.
Schrider, Daniel⋅Navarro, Fabio C⋅Galante, Pedro A⋅Parmigiani, Raphael B⋅Camargo, Anamaria A⋅Hahn, Matthew and de Souza, Sandro J
PLoS genetics, vol. 9, (no. 1), pp. e1003242, 2013. | Journal Article
 
MORE ACCURATE PHYLOGENIES INFERRED FROM LOW-RECOMBINATION REGIONS IN THE PRESENCE OF INCOMPLETE LINEAGE SORTING
Pease, James B and Hahn, Matthew
Evolution, vol. 67, (no. 8), Aug 2013. | Journal Article
 
Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster
Schrider, Daniel R⋅Houle, David⋅Lynch, Michael and Hahn, Matthew
Genetics, vol. 194, (no. 4), pp. 937-54, Aug 2013. | Journal Article
 
The evolution of the Anopheles 16 genomes project.
Neafsey, Daniel⋅Christophides, George⋅Collins, Frank H⋅Emrich, Scott J⋅Fontaine, Michael C⋅Gelbart, William⋅Hahn, Matthew⋅Howell, Paul I⋅Kafatos, Fotis C⋅Lawson, Daniel⋅Muskavitch, Marc A⋅Waterhouse, Robert M⋅Williams, Louise J and Besansky, Nora J
G3 (Bethesda, Md.), vol. 3, (no. 7), pp. 1191-4, 2013/Jul. | Journal Article
 
The Evolution of the Anopheles 16 Genomes Project
Neafsey, Daniel E⋅Christophides, George K⋅Collins, Frank H⋅Emrich, Scott J⋅Fontaine, Michael C⋅Gelbart, William⋅Hahn, Matthew W⋅Howell, Paul I⋅Kafatos, Fotis C⋅Lawson, Daniel⋅Muskavitch, Marc A. T⋅Waterhouse, Robert M⋅Williams, Louise J and Besansky, Nora J
G3: Genes|Genomes|Genetics, vol. 3, (no. 7), pp. 1194, 2013-07-01. | Journal Article
2012
Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach.
Cheng, Changde⋅White, Bradley⋅Kamdem, Colince⋅Mockaitis, Keithanne⋅Costantini, Carlo⋅Hahn, Matthew and Besansky, Nora J
Genetics, vol. 190, (no. 4), pp. 1417-32, 2012/Apr. | Journal Article
 
Genomic variation in natural populations of Drosophila melanogaster.
Langley, Charles H⋅Langley, Charles H⋅Langley, Charles H⋅Stevens, Kristian⋅Stevens, Kristian⋅Stevens, Kristian⋅Cardeno, Charis⋅Cardeno, Charis⋅Cardeno, Charis⋅Lee, Yuh C⋅Lee, Yuh C⋅Lee, Yuh Chwen G⋅Schrider, Daniel R⋅Schrider, Daniel⋅Schrider, Daniel R⋅Pool, John E⋅Pool, John E⋅Pool, John E⋅Langley, Sasha A⋅Langley, Sasha A⋅Langley, Sasha A⋅Suarez, Charlyn⋅Suarez, Charlyn⋅Suarez, Charlyn⋅Corbett-Detig, Russell B⋅Corbett-Detig, Russell B⋅Corbett-Detig, Russell B⋅Kolaczkowski, Bryan⋅Kolaczkowski, Bryan⋅Kolaczkowski, Bryan⋅Fang, Shu⋅Fang, Shu⋅Fang, Shu⋅Nista, Phillip M⋅Nista, Phillip M⋅Nista, Phillip M⋅Holloway, Alisha K⋅Holloway, Alisha⋅Holloway, Alisha K⋅Kern, Andrew D⋅Kern, Andrew D⋅Kern, Andrew D⋅Dewey, Colin N⋅Dewey, Colin N⋅Dewey, Colin N⋅Song, Yun S⋅Song, Yun S⋅Song, Yun S⋅Hahn, Matthew⋅Hahn, Matthew W⋅Hahn, Matthew W⋅Begun, David J⋅Begun, David J and Begun, David J
Genetics, vol. 192, (no. 2), pp. 533-98, 2012/Oct. | Journal Article
 
Inferring the History of Interchromosomal Gene Transposition in Drosophila Using n-Dimensional Parsimony
Han, Mira and Hahn, Matthew
Genetics, vol. 190, (no. 2), pp. 813-14SI, Feb 2012. | Journal Article
 
Interlocus gene conversion events introduce deleterious mutations into at least 1% of human genes associated with inherited disease
Casola, Claudio⋅Zekonyte, Ugne⋅Phillips, Andrew D⋅Cooper, David N and Hahn, Matthew
Genome Research, vol. 22, (no. 3), pp. 429-435, 2012. | Journal Article
 
No evidence for biased co-transmission of speciation islands in Anopheles gambiae.
Hahn, Matthew⋅White, Bradley⋅Muir, Christopher D and Besansky, Nora J
Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol. 367, (no. 1587), pp. 374-84, 2012/Feb/5. | Journal Article
 
Poster 129 An Unusual Cause of Right Upper Extremity Weakness and Shoulder Girdle Atrophy: A Case Report
Hahn, Matthew⋅Chhatre, Akhil⋅Dwyer, Jennifer⋅Kamrava, Evish⋅Tian, Shiqiang⋅Vardey, Rakesh and Varghese, George
PM&R, vol. 4, (no. 10), pp. S234, 2012. | Journal Article
 
Poster 246 Unilateral Thoracic and High Lumbar Facet Arthropathy in a Professional Baseball Pitcher: A Case Report
Paulus, Stephen⋅Dwyer, Jennifer⋅Fotopoulos, Constantine L⋅Hahn, Matthew and Kamrava, Evish
PM&R, vol. 4, (no. 10), pp. S273, 2012. | Journal Article
 
Poster 46 Hypothyroidism with Cognitive Response to Levothyroxine Supplementation in Minimally Conscious State: A Case Report
Vardey, Rakesh⋅Green, Michael M⋅Hahn, Matthew⋅Mayer, Matthew P and Tian, Shiquiang
PM&R, vol. 4, (no. 10), pp. S205, 2012. | Journal Article
 
Sex Chromosomes Evolved from Independent Ancestral Linkage Groups in Winged Insects
Pease, James B and Hahn, Matthew
Molecular Biology and Evolution, vol. 29, (no. 6), Jun 2012. | Journal Article
 
Very Low Rate of Gene Conversion in the Yeast Genome
Casola, Claudio⋅Conant, Gavin and Hahn, Matthew
Molecular Biology and Evolution, vol. 29, (no. 12), Dec 2012. | Journal Article
2011
Comparative and demographic analysis of orang-utan genomes.
Locke, Devin P⋅Hillier, La Deana⋅Warren, Wesley C⋅Worley, Kim C⋅Nazareth, Lynne V⋅Muzny, Donna M⋅Yang, Shiaw-Pyng⋅Wang, Zhengyuan⋅Chinwalla, Asif T⋅Minx, Patrick⋅Mitreva, Makedonka⋅Cook, Lisa⋅Delehaunty, Kim D⋅Fronick, Catrina⋅Schmidt, Heather⋅Fulton, Lucinda⋅Fulton, Robert⋅Nelson, Joanne O⋅Magrini, Vincent⋅Pohl, Craig⋅Graves, Tina A⋅Graves Lindsay, Tina⋅Markovic, Chris⋅Cree, Andy⋅Dinh, Huyen H⋅Hume, Jennifer⋅Kovar, Christie L⋅Fowler, Gerald R⋅Lunter, Gerton⋅Meader, Stephen⋅Heger, Andreas⋅Ponting, Chris⋅Marques-Bonet, Tomas⋅Alkan, Can⋅Chen, Lin⋅Cheng, Ze⋅Kidd, Jeffrey⋅Eichler, Evan⋅White, Simon⋅Searle, Stephen⋅Vilella, Albert J⋅Chen, Yuan⋅Flicek, Paul⋅Ma, Jian⋅Raney, Brian⋅Suh, Bernard⋅Burhans, Richard⋅Herrero, Javier⋅Haussler, David⋅Faria, Rui⋅Fernando, Olga⋅Darré, Fleur⋅Farré, Domènec⋅Gazave, Elodie⋅Oliva, Meritxell⋅Navarro, Arcadi⋅Roberto, Roberta⋅Capozzi, Oronzo⋅Archidiacono, Nicoletta⋅Della Valle, Giuliano⋅Purgato, Stefania⋅Rocchi, Mariano⋅Konkel, Miriam K⋅Walker, Jerilyn A⋅Ullmer, Brygg⋅Batzer, Mark A⋅Smit, Arian F⋅Hubley, Robert⋅Casola, Claudio⋅Schrider, Daniel⋅Hahn, Matthew⋅Quesada, Victor⋅Puente, Xose S⋅Ordoñez, Gonzalo R⋅López-Otín, Carlos⋅Vinar, Tomas⋅Brejova, Brona⋅Ratan, Aakrosh⋅Harris, Robert S⋅Miller, Webb C⋅Kosiol, Carolin⋅Lawson, Heather A⋅Taliwal, Vikas⋅Martins, André L⋅Siepel, Adam⋅Roychoudhury, Arindam⋅Ma, Xin⋅Degenhardt, Jeremiah⋅Bustamante, Carlos D⋅Gutenkunst, Ryan⋅Mailund, Thomas⋅Dutheil, Julien Y⋅Hobolth, Asger⋅Schierup, Mikkel Heide⋅Ryder, Oliver A⋅Yoshinaga, Yuko⋅de Jong, Pieter J⋅Weinstock, George M⋅Rogers, Jeffrey⋅Mardis, Elaine R⋅Gibbs, Richard A and Wilson, Richard K
Nature, vol. 469, (no. 7331), pp. 529-33, 2011/Jan/27. | Journal Article
 
Divergent transcriptional response to thermal stress by Anopheles gambiae larvae carrying alternative arrangements of inversion 2La
CASSONE, BRYAN J⋅MOLLOY, MATTHEW J⋅CHENG, CHANGDE⋅TAN, JOHN C⋅Hahn, Matthew and Besansky, Nora J
Molecular Ecology, vol. 20, (no. 12), pp. 2567-2580, Jun 2011. | Journal Article
 
Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster
Schrider, Daniel⋅Stevens, Kristian⋅Cardeno, Charis M⋅Langley, Charles H and Hahn, Matthew
Genome Research, vol. 21, (no. 12), pp. 2087-2095, 2011. | Journal Article
 
No excess gene movement is detected off the avian or lepidopteran Z chromosome.
Toups, Melissa A⋅Pease, James B and Hahn, Matthew
Genome biology and evolution, vol. 3, pp. 1381-90, 2011. | Journal Article
 
Pervasive Multinucleotide Mutational Events in Eukaryotes
Schrider, Daniel⋅Hourmozdi, Jonathan N and Hahn, Matthew
Current Biology, vol. 21, (no. 12), pp. 1051-1054, 2011. | Journal Article
 
Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals
Nehrt, Nathan L⋅Clark, Wyatt T⋅Radivojac, Predrag and Hahn, Matthew
PLoS Computational Biology, vol. 7, (no. 6), 2011. | Journal Article
 
Very few RNA and DNA sequence differences in the human transcriptome.
Schrider, Daniel⋅Gout, Jean-Francois and Hahn, Matthew
PloS one, vol. 6, (no. 10), pp. e25842, 2011. | Journal Article