153 Publications (Page 4 of 7)
2013
Quantitative glycomics strategies.
Mechref, Yehia⋅Hu, Yunli⋅Desantos-Garcia, Janie L⋅Hussein, Ahmed and Tang, Haixu
Molecular & cellular proteomics : MCP, vol. 12, (no. 4), pp. 874-884, April 2013. | Journal Article
 
Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).
Xue, Liang⋅Wang, Pengcheng⋅Wang, Lianshui⋅Renzi, Emily⋅Radivojac, Predrag⋅Tang, Haixu⋅Arnold, Randy⋅Zhu, Jian Kang and Tao, Weiguo A
Molecular & cellular proteomics : MCP, vol. 12, (no. 8), pp. 2354-69, 2013/Aug. | Journal Article
 
Software tools for glycan profiling.
Yu, Chuan Yih⋅Mayampurath, Anoop M and Tang, Haixu
Methods in molecular biology (Clifton, N.J.), vol. 951, pp. 269-76, 2013. | Journal Article
 
Testosterone affects neural gene expression differently in male and female juncos: a role for hormones in mediating sexual dimorphism and conflict.
Peterson, Mark P⋅Rosvall, Kimberly⋅Choi, Jeong-Hyeon⋅Ziegenfus, Charles⋅Tang, Haixu⋅Colbourne, John K and Ketterson, Ellen D
PloS one, vol. 8, (no. 4), pp. e61784, 2013. | Journal Article
 
Testosterone Affects Neural Gene Expression Differently in Male and Female Juncos: A Role for Hormones in Mediating Sexual Dimorphism and Conflict. e61784
Peterson, Mark P⋅Rosvall, Kimberly⋅Choi, Jeong-Hyeon⋅Ziegenfus, Charles⋅Tang, Haixu⋅Colbourne, John and Ketterson, Ellen D
PLoS ONE, vol. 8, (no. 4), 2013. | Journal Article
2012
A de Bruijn Graph Approach to the Quantification of Closely-Related Genomes in a Microbial Community
Wang, Mingjie⋅Wang, Mingjie⋅Ye, Yuzhen⋅Ye, Yuzhen⋅Tang, Haixu and Tang, Haixu
Journal of Computational Biology, vol. 19, (no. 6), pp. 825, 2012-06-01. | Journal Article
 
BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics.
Sheng, Quanhu⋅Dai, Jie⋅Wu, Yibo⋅Tang, Haixu and Zeng, Rong
Journal of proteome research, vol. 11, (no. 3), pp. 1494-502, 2012/Mar/2. | Journal Article
 
De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system.
Peterson, Mark P⋅Whittaker, Danielle J⋅Ambreth, Shruthi⋅Sureshchandra, Suhas⋅Buechlein, Aaron⋅Podicheti, Ram⋅Choi, Jeong-Hyeon⋅Lai, Zhao⋅Mockatis, Keithanne⋅Colbourne, John⋅Tang, Haixu and Ketterson, Ellen D
BMC genomics, vol. 13, pp. 305, 2012. | Journal Article
 
Detecting structural variants involving repetitive elements: capturing transposition events of IS elements in the genome of Escherichia coli
Lee, Heewook⋅Popodi, Ellen⋅Foster, Patricia L and Tang, Haixu
BMC Bioinformatics, vol. 13, (no. Suppl 18), pp. A12, 2012-00-00. | Journal Article
 
Diverse CRISPRs evolving in human microbiomes.
Rho, Mina⋅Guttman, David S⋅Rho, Mina⋅Wu, Yu-Wei⋅Wu, Yu-Wei⋅Tang, Haixu⋅Tang, Haixu⋅Doak, Thomas⋅Doak, Thomas G⋅Ye, Yuzhen and Ye, Yuzhen
PLoS genetics, vol. 8, (no. 6), pp. e1002441, 2012. | Journal Article
 
Next-generation sequencing technologies and fragment assembly algorithms.
Lee, Heewook and Tang, Haixu
Methods in molecular biology (Clifton, N.J.), vol. 855, pp. 155-74, 2012. | Journal Article
 
N-glycan profiling by microchip electrophoresis to differentiate disease states related to esophageal adenocarcinoma.
Mitra, Indranil⋅Zhuang, Zexi⋅Zhang, Yuening⋅Yu, Chuan Yih⋅Hammoud, Zane T⋅Tang, Haixu⋅Mechref, Yehia and Jacobson, Stephen C
Analytical chemistry, vol. 84, (no. 8), pp. 3621-7, 2012/Apr/17. | Journal Article
 
Protein identification problem from a Bayesian point of view.
Li, Yong Fuga⋅Arnold, Randy J⋅Radivojac, Predrag and Tang, Haixu
Statistics and its interface, vol. 5, (no. 1), pp. 21-37, January 1, 2012. | Journal Article
 
RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data.
Zhao, Yongan⋅Tang, Haixu and Ye, Yuzhen
Bioinformatics (Oxford, England), vol. 28, (no. 1), pp. 125-6, 2012/Jan/1. | Journal Article
 
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing.
Lee, Heewook⋅Lee, Heewook⋅Popodi, Ellen⋅Popodi, Ellen⋅Tang, Haixu⋅Tang, Haixu⋅Foster, Patricia and Foster, Patricia L
Proceedings of the National Academy of Sciences of the United States of America, vol. 109, (no. 41), pp. E2774-83, 2012/Oct/9. | Journal Article
 
Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome.
Wierzbicki, A.T.⋅Wierzbicki, Andrzej⋅Cocklin, Ross⋅Cocklin, R.⋅Mayampurath, A.⋅Mayampurath, Anoop M⋅Lister, R.⋅Lister, Ryan⋅Jordan Rowley, M.⋅Rowley, M J⋅Gregory, Brian D⋅Gregory, B.D.⋅Ecker, J.R.⋅Ecker, Joseph⋅Tang, Haixu⋅Tang, H.⋅Pikaard, C.S. and Pikaard, Craig S
Genes & development, vol. 26, (no. 16), pp. 1825-36, 2012/Aug/15. | Journal Article
2011
A novel alignment method and multiple filters for exclusion of unqualified peptides to enhance label-free quantification using peptide intensity in LC-MS/MS.
Lai, Xianyin⋅Wang, Lianshui⋅Tang, Haixu and Witzmann, Frank A
Journal of proteome research, vol. 10, (no. 10), pp. 4799-812, 2011/Oct/7. | Journal Article
 
Bioinformatic Approaches in Glycomics and Glycoproteomics
M. Mayampurath, Anoop⋅Yu, Chuan-Yih⋅Mechref, Yehia and Tang, Haixu
Current Proteomics, vol. 8, (no. 4), pp. 324, 2011-12-01. | Journal Article
 
Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics.
Shah, Neethu⋅Tang, Haixu⋅Doak, Thomas and Ye, Yuzhen
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pp. 165-76, 2011. | Journal Article
 
Enhanced peptide quantification using spectral count clustering and cluster abundance.
Lee, Seungmook⋅Kwon, Min-Seok⋅Lee, Hyoung-Joo⋅Paik, Young-Ki⋅Tang, Haixu⋅Lee, Jae K and Park, Taesung
BMC bioinformatics, vol. 12, pp. 423, 2011. | Journal Article
 
Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity.
Mayampurath, Anoop M⋅Wu, Yin⋅Segu, Zaneer M⋅Mechref, Yehia and Tang, Haixu
Rapid communications in mass spectrometry : RCM, vol. 25, (no. 14), pp. 2007-19, 2011/Jul/30. | Journal Article
 
On the Accuracy and Limits of Peptide Fragmentation Spectrum Prediction
Li, Sujun⋅Arnold, Randy J⋅Tang, Haixu and Radivojac, Predrag
Analytical Chemistry, vol. 83, (no. 3), Feb 1, 2011. | Journal Article
 
RAPSearch: a fast protein similarity search tool for short reads.
Ye, Yuzhen⋅Choi, Jeong-Hyeon and Tang, Haixu
BMC bioinformatics, vol. 12, (no. 1), pp. 159, 2011. | Journal Article
 
The ecoresponsive genome of Daphnia pulex.
Colbourne, John K⋅Colbourne, John K⋅Pfrender, Michael E⋅Pfrender, Michael E⋅Gilbert, Donald G⋅Gilbert, Donald⋅Thomas, William Kelley⋅Thomas, W Kelley⋅Tucker, Abraham⋅Tucker, Abraham⋅Oakley, Todd H⋅Oakley, Todd⋅Tokishita, Shinichi⋅Tokishita, Shinichi⋅Aerts, Andrea⋅Aerts, Andrea⋅Arnold, Georg J⋅Arnold, Georg J⋅Basu, Malay Kumar⋅Basu, Malay K⋅Bauer, Darren J⋅Bauer, Darren J⋅Cáceres, Carla E⋅Caceres, Carla⋅Cáceres, Carla E⋅Carmel, Liran⋅Carmel, Liran⋅Casola, Claudio⋅Casola, Claudio⋅Choi, Jeong-Hyeon⋅Choi, Jeong-Hyeon⋅Detter, John C⋅Detter, John C⋅Dong, Qunfeng⋅Dong, Qunfeng⋅Dusheyko, Serge⋅Dusheyko, Serge⋅Eads, Brian D⋅Eads, Brian⋅Fröhlich, Thomas⋅Fröhlich, Thomas⋅Geiler-Samerotte, Kerry A⋅Geiler-Samerotte, Kerry A⋅Gerlach, Daniel⋅Gerlach, Daniel⋅Hatcher, Phil⋅Hatcher, Phil⋅Jogdeo, Sanjuro⋅Jogdeo, Sanjuro⋅Krijgsveld, Jeroen⋅Krijgsveld, Jeroen⋅Kriventseva, Evgenia V⋅Kriventseva, Evgenia V⋅Kultz, Dietmar⋅Kültz, Dietmar⋅Kültz, Dietmar⋅Laforsch, Christian⋅Laforsch, Christian⋅Lindquist, Erika⋅Lindquist, Erika⋅Lopez, Jacqueline⋅Lopez, Jacqueline⋅Manak, J Robert⋅Manak, J R⋅Muller, Jean⋅Muller, Jean⋅Pangilinan, Jasmyn⋅Pangilinan, Jasmyn⋅Patwardhan, Rupali P⋅Patwardhan, Rupali P⋅Pitluck, Samuel⋅Pitluck, Samuel⋅Pritham, Ellen J⋅Pritham, Ellen J⋅Rechtsteiner, Andreas⋅Rechtsteiner, Andreas⋅Rho, Mina⋅Rho, Mina⋅Rogozin, Igor B⋅Rogozin, Igor B⋅Sakarya, Onur⋅Sakarya, Onur⋅Salamov, Asaf⋅Salamov, Asaf⋅Schaack, Sarah⋅Schaack, Sarah⋅Shapiro, Harris⋅Shapiro, Harris⋅Shiga, Yasuhiro⋅Shiga, Yasuhiro⋅Skalitzky, Courtney⋅Skalitzky, Courtney⋅Smith, Zachary⋅Smith, Zachary⋅Souvorov, Alexander⋅Souvorov, Alexander⋅Sung, Way⋅Sung, Way⋅Tang, Zuojian⋅Tang, Zuojian⋅Tsuchiya, Dai⋅Tsuchiya, Dai⋅Tu, Hank⋅Tu, Hank⋅Vos, Harmjan⋅Vos, Harmjan⋅Wang, Mei⋅Wang, Mei⋅Wolf, Yuri I⋅Wolf, Yuri I⋅Yamagata, Hideo⋅Yamagata, Hideo⋅Yamada, Takuji⋅Yamada, Takuji⋅Ye, Yuzhen⋅Ye, Yuzhen⋅Shaw, Joseph R⋅Shaw, Joseph⋅Andrews, Justen⋅Andrews, Justen⋅Crease, Teresa J⋅Crease, Teresa J⋅Tang, Haixu⋅Tang, Haixu⋅Lucas, Susan M⋅Lucas, Susan M⋅Robertson, Hugh M⋅Robertson, Hugh M⋅Bork, Peer⋅Bork, Peer⋅Koonin, Eugene V⋅Koonin, Eugene V⋅Zdobnov, Evgeny⋅Zdobnov, Evgeny M⋅Grigoriev, Igor⋅Grigoriev, Igor V⋅Lynch, Michael⋅Lynch, Michael⋅Boore, Jeffrey L and Boore, Jeffrey L
Science (New York, N.Y.), vol. 331, (no. 6017), pp. 555-61, 2011/Feb/4. | Journal Article
 
The transcriptional diversity of 25 Drosophila cell lines.
Cherbas, Lucy⋅Cherbas, Lucy⋅Cherbas, Lucy⋅Willingham, Aarron⋅Willingham, Aarron⋅Willingham, Aarron⋅Zhang, Dayu⋅Zhang, Dayu⋅Zhang, Dayu⋅Yang, Li⋅Yang, Li⋅Yang, Li⋅Zou, Yi⋅Zou, Yi⋅Zou, Yi⋅Eads, Brian D⋅Eads, Brian D⋅Eads, Brian⋅Carlson, Joseph W⋅Carlson, Joseph W⋅Carlson, Joseph W⋅Landolin, Jane M⋅Landolin, Jane M⋅Landolin, Jane M⋅Kapranov, Philipp⋅Kapranov, Philipp⋅Kapranov, Philipp⋅Dumais, Jacqueline⋅Dumais, Jacqueline⋅Dumais, Jacqueline⋅Samsonova, Anastasia⋅Samsonova, Anastasia⋅Samsonova, Anastasia⋅Choi, Jeong-Hyeon⋅Choi, Jeong-Hyeon⋅Choi, Jeong-Hyeon⋅Roberts, Johnny⋅Roberts, Johnny⋅Roberts, Johnny⋅Davis, Carrie A⋅Davis, Carrie A⋅Davis, Carrie A⋅Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅van Baren, Marijke J⋅van Baren, Marijke J⋅Baren, Marijke J⋅Ghosh, Srinka⋅Ghosh, Srinka⋅Ghosh, Srinka⋅Dobin, Alexander⋅Dobin, Alexander⋅Dobin, Alexander⋅Bell, Kim⋅Bell, Kim⋅Bell, Kim⋅Lin, Wei⋅Lin, Wei⋅Lin, Wei⋅Langton, Laura⋅Langton, Laura⋅Langton, Laura⋅Duff, Michael O⋅Duff, Michael O⋅Duff, Michael O⋅Tenney, Aaron E⋅Tenney, Aaron E⋅Tenney, Aaron E⋅Zaleski, Chris⋅Zaleski, Chris⋅Zaleski, Chris⋅Brent, Michael R⋅Brent, Michael R⋅Brent, Michael R⋅Hoskins, Roger A⋅Hoskins, Roger A⋅Hoskins, Roger A⋅Kaufman, Thomas C⋅Kaufman, Thomas C⋅Kaufman, Thomas C⋅Andrews, Justen⋅Andrews, Justen⋅Andrews, Justen⋅Graveley, Brenton R⋅Graveley, Brenton R⋅Graveley, Brenton R⋅Perrimon, Norbert⋅Perrimon, Norbert⋅Perrimon, Norbert⋅Celniker, Susan E⋅Celniker, Susan E⋅Celniker, Susan E⋅Gingeras, Thomas R⋅Gingeras, Thomas⋅Gingeras, Thomas R⋅Cherbas, Peter T⋅Cherbas, Peter and Cherbas, Peter
Genome research, vol. 21, (no. 2), pp. 301-14, 2011/Feb. | Journal Article