153 Publications (Page 3 of 7)
2015
Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing.
Foster, Patricia L⋅Foster, Patricia⋅Lee, Heewook⋅Lee, Heewook⋅Popodi, Ellen⋅Popodi, Ellen⋅Townes, Jesse P⋅Townes, Jesse⋅Tang, Haixu and Tang, Haixu
Proceedings of the National Academy of Sciences of the United States of America, vol. 112, (no. 44), pp. E5990-E5999, November 3, 2015. | Journal Article
 
DNA sequence templates adjacent nucleosome and ORC sites at gene amplification origins inDrosophila
Liu, Jun⋅Liu, Jun⋅Zimmer, Kurt⋅Zimmer, Kurt⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Paranjape, Neha⋅Paranjape, Neha⋅Podicheti, Ram⋅Podicheti, Ram⋅Tang, Haixu⋅Tang, Haixu⋅Calvi, Brian R and Calvi, Brian R
Nucleic Acids Research, vol. 43, (no. 18), pp. 8761, 2015-10-15. | Journal Article
 
Identification of Glycopeptides with Multiple Hydroxylysine O-Glycosylation Sites by Tandem Mass Spectrometry
Zhang, Yanlin⋅Zhang, Yanlin⋅Yu, Chuan-Yih⋅Yu, Chuan-Yih⋅Song, Ehwang⋅Song, Ehwang⋅Li, Shuai Cheng⋅Li, Shuai Cheng⋅Mechref, Yehia⋅Mechref, Yehia⋅Tang, Haixu⋅Tang, Haixu⋅Liu, Xiaowen and Liu, Xiaowen
Journal of proteome research, vol. 14, (no. 12), pp. 5108, 2015-Dec-04. | Journal Article
 
Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis
Blevins, Todd⋅Blevins, Todd⋅Podicheti, Ram⋅Podicheti, Ram⋅Mishra, Vibhor⋅Mishra, Vibhor⋅Marasco, Michelle⋅Marasco, Michelle⋅Wang, Jing⋅Wang, Jing⋅Rusch, Doug⋅Rusch, Doug⋅Tang, Haixu⋅Tang, Haixu⋅Pikaard, Craig S and Pikaard, Craig S
eLife, vol. 4, pp. e09591, 2015-Oct-02. | Journal Article
 
Secure Genomic Computation through Site-Wise Encryption
Zhao, Yongan⋅Wang, XiaoFeng and Tang, Haixu
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, vol. 2015, pp. 231, 2015-00-00. | Journal Article
 
Stranded Whole Transcriptome RNA-Seq for All RNA Types
Miller, David F B⋅Miller, David F B⋅Yan, Pearlly X⋅Yan, Pearlly X⋅Fang, Fang⋅Fang, Fang⋅Buechlein, Aaron⋅Buechlein, Aaron⋅Ford, James B⋅Ford, James B⋅Tang, Haixu⋅Tang, Haixu⋅Huang, Tim H⋅Huang, Tim H⋅Burow, Matthew E⋅Burow, Matthew E⋅Liu, Yunlong⋅Liu, Yunlong⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Nephew, Kenneth P and Nephew, Kenneth P
Current protocols in human genetics, vol. 84, pp. 11.1423, 2015-Jan-20. | Journal Article
 
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis
Ye, Yuzhen⋅Ye, Yuzhen⋅Tang, Haixu and Tang, Haixu
2015-04-06. | Journal Article
2014
A community assessment of privacy preserving techniques for human genomes
Jiang, Xiaoqian⋅Zhao, Yongan⋅Wang, Xiaofeng⋅Malin, Bradley⋅Wang, Shuang⋅Ohno-Machado, Lucila and Tang, Haixu
BMC Medical Informatics and Decision Making , vol. 14, 2014. | Journal Article
 
A two-step process for epigenetic inheritance in Arabidopsis.
Blevins, Todd⋅Pontvianne, Frédéric⋅Cocklin, Ross⋅Podicheti, Ram⋅Chandrasekhara, Chinmayi⋅Yerneni, Satwica⋅Braun, Chris⋅Lee, Brandon⋅Rusch, Doug⋅Mockaitis, Keithanne⋅Tang, Haixu and Pikaard, Craig S
Molecular cell, vol. 54, (no. 1), pp. 30-42, 2014/Apr/10. | Journal Article
 
Bioinformatics protocols in glycomics and glycoproteomics.
Tang, Haixu⋅Mayampurath, Anoop⋅Yu, Chuan-Yih and Mechref, Yehia
Current protocols in protein science, vol. 76, pp. 2.15.1-7, April 1, 2014. | Journal Article
 
Characterization of microbial associations in human oral microbiome
Lee, Min Su⋅Oh, Sangyoon and Tang, Haixu
Bio-medical materials and engineering, vol. 24, (no. 6), pp. 3744, 2014-00-00. | Journal Article
 
Computational framework for identification of intact glycopeptides in complex samples.
Mayampurath, Anoop M⋅Yu, Chuan Yih⋅Song, Ehwang⋅Balan, Jagadheshwar⋅Mechref, Yehia and Tang, Haixu
Analytical chemistry, vol. 86, (no. 1), pp. 453-63, 2014/Jan/7. | Journal Article
 
Detection of structural variants involving repetitive regions in the reference genome.
Lee, Heewook⋅Popodi, Ellen⋅Foster, Patricia L and Tang, Haixu
Journal of computational biology : a journal of computational molecular cell biology, vol. 21, (no. 3), pp. 219-33, 2014/Mar. | Journal Article
 
Gene finding in metatranscriptomic sequences
Ismail, Wazim⋅Ye, Yuzhen and Tang, Haixu
BMC Bioinformatics , vol. 15, pp. S8, 2014. | Journal Article
 
Glycoproteomics: identifying the glycosylation of prostate specific antigen at normal and high isoelectric points by LC-MS/MS.
Song, Ehwang⋅Mayampurath, Anoop⋅Yu, Chuan-Yih⋅Tang, Haixu and Mechref, Yehia
Journal of proteome research, vol. 13, (no. 12), pp. 5570-5580, December 5, 2014. | Journal Article
 
Label-free glycopeptide quantification for biomarker discovery in human sera.
Mayampurath, Anoop⋅Song, Ehwang⋅Mathur, Abhinav⋅Yu, Chuan-Yih⋅Hammoud, Zane⋅Mechref, Yehia and Tang, Haixu
Journal of proteome research, vol. 13, (no. 11), pp. 4821-4832, November 7, 2014. | Journal Article
 
Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in liver and muscle of a songbird.
Peterson, Mark P⋅Rosvall, Kimberly⋅Taylor, Charlene A⋅Lopez, Jacqueline A⋅Choi, Jeong-Hyeon⋅Ziegenfus, Charles⋅Tang, Haixu⋅Colbourne, John K and Ketterson, Ellen D
The Journal of experimental biology, vol. 217, (no. Pt 4), pp. 507-17, 2014/Feb/15. | Journal Article
2013
A new method for stranded whole transcriptome RNA-seq.
Miller, David F⋅Yan, Pearlly S⋅Buechlein, Aaron⋅Rodriguez, Benjamin A⋅Yilmaz, Ayse S⋅Goel, Shokhi⋅Lin, Hai⋅Collins-Burow, Bridgette⋅Rhodes, Lyndsay V⋅Braun, Chris⋅Pradeep, Sunila⋅Rupaimoole, Rajesha⋅Dalkilic, Mehmet⋅Sood, Anil K⋅Burow, Matthew E⋅Tang, Haixu⋅Huang, Tim H⋅Liu, Yunlong⋅Rusch, Douglas B and Nephew, Ken
Methods (San Diego, Calif.), vol. 63, (no. 2), pp. 126-34, 2013/Sep/15. | Journal Article
 
Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry.
Yu, Chuan Yih⋅Mayampurath, Anoop M⋅Hu, Yunli⋅Zhou, Shiyue⋅Mechref, Yehia and Tang, Haixu
Bioinformatics (Oxford, England), vol. 29, (no. 13), pp. 1706-7, 2013/Jul/1. | Journal Article
 
CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes
Zhang, Quan⋅Rho, Mina⋅Tang, Haixu⋅Doak, Thomas and Ye, Yuzhen
Genome Biology, vol. 14, (no. 4), pp. R40, 2013. | Journal Article
 
Extending the coverage of spectral libraries: A neighbor-based approach to predicting intensities of peptide fragmentation spectra
Ji, Chao⋅Ji, Chao⋅Arnold, Randy J⋅Arnold, Randy J⋅Sokoloski, Kevin J⋅Sokoloski, Kevin J⋅Hardy, Richard W⋅Hardy, Richard W⋅Tang, Haixu⋅Tang, Haixu⋅Radivojac, Predrag and Radivojac, Predrag
Proteomics, vol. 13, (no. 5), pp. 756-765, 2013. | Journal Article
 
Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012.
Leymarie, Nancy⋅Leymarie, Nancy⋅Leymarie, Nancy⋅Leymarie, Nancy⋅Griffin, Paula J⋅Griffin, Paula J.⋅Griffin, Paula J.⋅Griffin, Paula J⋅Jonscher, Karen⋅Jonscher, Karen⋅Jonscher, Karen⋅Jonscher, Karen⋅Kolarich, Daniel⋅Kolarich, Daniel⋅Kolarich, Daniel⋅Kolarich, Daniel⋅Orlando, Ron⋅Orlando, Ron⋅Orlando, Ron⋅Orlando, Ron⋅Mc Comb, Mark⋅McComb, Mark⋅Mc Comb, Mark⋅McComb, Mark⋅Zaia, Joseph⋅Zaia, Joseph⋅Zaia, Joseph⋅Zaia, Joseph⋅Aguilan, Jennifer⋅Aguilan, Jennifer⋅Aguilan, Jennifer⋅Aguilan, Jennifer⋅Alley, William R⋅Alley, William R⋅Alley, William R.⋅Alley, William R.⋅Altmann, Friederich⋅Altmann, Friederich⋅Altmann, Friederich⋅Altmann, Friederich⋅Ball, Lauren E.⋅Ball, Lauren E⋅Ball, Lauren E.⋅Ball, Lauren E⋅Basumallick, Lipika⋅Basumallick, Lipika⋅Basumallick, Lipika⋅Basumallick, Lipika⋅Bazemore-Walker, Carthene R⋅Bazemore-Walker, Carthene R⋅Bazemore-Walker, Carthene R.⋅Bazemore-Walker, Carthene R.⋅Behnken, Henning⋅Behnken, Henning⋅Behnken, Henning⋅Behnken, Henning⋅Blank, Michael A.⋅Blank, Michael A.⋅Blank, Michael A⋅Blank, Michael A⋅Brown, Kristy J.⋅Brown, Kristy J.⋅Brown, Kristy J⋅Brown, Kristy J⋅Bunz, Svenja Catharina⋅Bunz, Svenja-Catharina⋅Bunz, Svenja Catharina⋅Bunz, Svenja-Catharina⋅Cairo, Christopher W⋅Cairo, Christopher W.⋅Cairo, Christopher W⋅Cairo, Christopher W.⋅Cipollo, John F⋅Cipollo, John F.⋅Cipollo, John F.⋅Cipollo, John F⋅Daneshfar, Rambod⋅Daneshfar, Rambod⋅Daneshfar, Rambod⋅Daneshfar, Rambod⋅Desaire, Heather⋅Desaire, Heather⋅Desaire, Heather⋅Desaire, Heather⋅Drake, Richard R⋅Drake, Richard R⋅Drake, Richard R.⋅Drake, Richard R.⋅Go, Eden P.⋅Go, Eden P⋅Go, Eden P⋅Go, Eden P.⋅Goldman, Radoslav⋅Goldman, Radoslav⋅Goldman, Radoslav⋅Goldman, Radoslav⋅Gruber, Clemens⋅Gruber, Clemens⋅Gruber, Clemens⋅Gruber, Clemens⋅Halim, Adnan⋅Halim, Adnan⋅Halim, Adnan⋅Halim, Adnan⋅Hathout, Yetrib⋅Hathout, Yetrib⋅Hathout, Yetrib⋅Hathout, Yetrib⋅Hensbergen, Paul J⋅Hensbergen, Paul J.⋅Hensbergen, Paul J.⋅Hensbergen, Paul J⋅Horn, David M.⋅Horn, David M⋅Horn, David M.⋅Horn, David M⋅Hurum, Deanna⋅Hurum, Deanna⋅Hurum, Deanna⋅Hurum, Deanna⋅Jabs, Wolfgang⋅Jabs, Wolfgang⋅Jabs, Wolfgang⋅Jabs, Wolfgang⋅Larson, Göran⋅Larson, Göran⋅Larson, Göran⋅Larson, Göran⋅Ly, Mellisa⋅Ly, Mellisa⋅Ly, Mellisa⋅Ly, Mellisa⋅Mann, Benjamin F⋅Mann, Benjamin F⋅Mann, Benjamin F.⋅Mann, Benjamin F.⋅Marx, Kristina⋅Marx, Kristina⋅Marx, Kristina⋅Marx, Kristina⋅Mechref, Yehia⋅Mechref, Yehia⋅Mechref, Yehia⋅Mechref, Yehia⋅Meyer, Bernd⋅Meyer, Bernd⋅Meyer, Bernd⋅Meyer, Bernd⋅Möginger, Uwe⋅Möginger, Uwe⋅Möginger, Uwe⋅Möginger, Uwe⋅Neusüβ, Christian⋅Neusüß, C.⋅Neusüβ, Christian⋅Neusüß, Christian⋅Neusüß, Christian⋅Nilsson, Jonas⋅Nilsson, Jonas⋅Nilsson, Jonas⋅Nilsson, Jonas⋅Novotny, Milos V⋅Novotny, Milos V⋅Novotny, Milos V.⋅Novotny, Milos V.⋅Nyalwidhe, Julius O⋅Nyalwidhe, Julius O.⋅Nyalwidhe, Julius O⋅Nyalwidhe, Julius O.⋅Packer, Nicolle H⋅Packer, Nicolle H.⋅Packer, Nicolle H.⋅Packer, Nicolle H⋅Pompach, Petr⋅Pompach, Petr⋅Pompach, Petr⋅Pompach, Petr⋅Reiz, Bela⋅Reiz, Bela⋅Reiz, Bela⋅Reiz, Bela⋅Resemann, Anja⋅Resemann, Anja⋅Resemann, Anja⋅Resemann, Anja⋅Rohrer, Jeffrey S⋅Rohrer, Jeffrey S.⋅Rohrer, Jeffrey S.⋅Rohrer, Jeffrey S⋅Ruthenbeck, Alexandra⋅Ruthenbeck, Alexandra⋅Ruthenbeck, Alexandra⋅Ruthenbeck, Alexandra⋅Sanda, Miloslav⋅Sanda, Miloslav⋅Sanda, Miloslav⋅Sanda, Miloslav⋅Schulz, Jan Mirco⋅Schulz, Jan M⋅Schulz, Jan Mirco⋅Schulz, Jan Mirco⋅Schweiger-Hufnagel, Ulrike⋅Schweiger-Hufnagel, Ulrike⋅Schweiger-Hufnagel, Ulrike⋅Schweiger-Hufnagel, Ulrike⋅Sihlbom, Carina⋅Sihlbom, Carina⋅Sihlbom, Carina⋅Sihlbom, Carina⋅Song, Ehwang⋅Song, Ehwang⋅Song, Ehwang⋅Song, Ehwang⋅Staples, Gregory O.⋅Staples, Gregory O.⋅Staples, Gregory O⋅Staples, Gregory O⋅Suckau, Detlev⋅Suckau, Detlev⋅Suckau, Detlev⋅Suckau, Detlev⋅Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅Thaysen Andersen, Morten⋅Thaysen-Andersen, Morten⋅Thaysen-Andersen, Morten⋅Thaysen-Andersen, Morten⋅Viner, Rosa I.⋅Viner, Rosa I⋅Viner, Rosa I.⋅Viner, Rosa I⋅An, Yanming⋅An, Yanming⋅An, Yanming⋅An, Yanming⋅Valmu, Leena⋅Valmu, Leena⋅Valmu, Leena⋅Valmu, Leena⋅Wada, Yoshinao⋅Wada, Yoshinao⋅Wada, Yoshinao⋅Wada, Yoshinao⋅Watson, Megan⋅Watson, Megan⋅Watson, Megan⋅Watson, Megan⋅Windwarder, Markus⋅Windwarder, Markus⋅Windwarder, Markus⋅Windwarder, Markus⋅Whittal, Randy⋅Whittal, Randy⋅Whittal, Randy⋅Whittal, Randy⋅Wuhrer, Manfred⋅Wuhrer, Manfred⋅Wuhrer, Manfred⋅Wuhrer, Manfred⋅Zhu, Yiying⋅Zhu, Yiying⋅Zhu, Yiying⋅Zhu, Yiying⋅Zou, Chunxia⋅Zou, Chunxia⋅Zou, Chunxia and Zou, Chunxia
Molecular & cellular proteomics : MCP, vol. 12, (no. 10), pp. 2935-51, 2013/Oct. | Journal Article
 
On the mutational topology of the bacterial genome.
Foster, Patricia L⋅Hanson, Andrew J⋅Lee, Heewook⋅Popodi, Ellen M and Tang, Haixu
G3 (Bethesda, Md.), vol. 3, (no. 3), pp. 399-407, 2013/Mar. | Journal Article
 
Probabilistic inference of biochemical reactions in microbial communities from metagenomic sequences.
Jiao, Dazhi⋅Ye, Yuzhen and Tang, Haixu
PLoS computational biology, vol. 9, (no. 3), pp. e1002981, 2013. | Journal Article
 
Quantitative glycomics strategies.
Mechref, Yehia⋅Hu, Yunli⋅Desantos-Garcia, Janie L⋅Hussein, Ahmed and Tang, Haixu
Molecular & cellular proteomics : MCP, vol. 12, (no. 4), pp. 874-84, 2013/Apr. | Journal Article