153 Publications (Page 1 of 7)
2020
A Fast and Memory-Efficient Spectral Library Search Algorithm using Locality-Sensitive Hashing
Wang, Lei⋅Liu, Kaiyuan⋅Li, Sujun and Tang, Haixu
Proteomics, pp. e2000002, 2020-May-16. | Journal Article
 
Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
Liu, Kaiyuan⋅Li, Sujun⋅Wang, Lei⋅Ye, Yuzhen and Tang, Haixu
Analytical chemistry, vol. 92, (no. 6), pp. 4283, 2020-Mar-17. | Journal Article
 
Navigating ethical quandaries with the privacy dilemma of biomedical datasets
Gürsoy, Gamze⋅Doerr, Megan⋅Wilbanks, John⋅Wagner, Jennifer K⋅Tang, Haixu and Brenner, Steven E
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, vol. 25, pp. 736, 2020-00-00. | Journal Article
 
New complexities of SOS-induced “untargeted” mutagenesis in Escherichia coli as revealed by mutation accumulation and whole-genome sequencing
Niccum, Brittany A⋅Coplen, Christopher P⋅Lee, Heewook⋅Mohammed Ismail, Wazim⋅Tang, Haixu and Foster, Patricia L
DNA Repair, vol. 90, pp. 102852, June 2020. | Journal Article
 
Overlap Detection on Long, Error-Prone Sequencing Reads via Smooth q-Gram
Song, Yan⋅Song, Yan⋅Tang, Haixu⋅Tang, Haixu⋅Zhang, Haoyu⋅Zhang, Haoyu⋅Zhang, Qin and Zhang, Qin
Bioinformatics (Oxford, England), 2020-Apr-20. | Journal Article
 
Towards Fair Cross-Domain Adaptation via Generative Learning
Wang, Tongxin⋅Wang, Tongxin⋅Ding, Zhengming⋅Ding, Zhengming⋅Shao, Wei⋅Shao, Wei⋅Tang, Haixu⋅Tang, Haixu⋅Huang, Kun and Huang, Kun
2020-03-04. | Journal Article
2019
8-plex LC-MS/MS Analysis of Permethylated N-glycans Achieved by Using Stable Isotopic Iodomethane
Dong, Xue⋅Peng, Wenjing⋅Yu, Chuan-Yih⋅Zhou, Shiyue⋅Donohoo, Kaitlyn B⋅Tang, Haixu and Mechref, Yehia
Analytical Chemistry, 2019-07-29. | Journal Article
 
Algorithmic approaches to clonal reconstruction in heterogeneous cell populations
Ismail, Wazim Mohammed⋅Nzabarushimana, Etienne and Tang, Haixu
Quantitative Biology, vol. 7, (no. 4), pp. 265, 2019-12-00. | Journal Article
 
A meta-proteogenomic approach to peptide identification incorporating assembly uncertainty and genomic variation
Li, Sujun⋅Li, Sujun⋅Tang, Haixu⋅Tang, Haixu⋅Ye, Yuzhen and Ye, Yuzhen
Molecular & cellular proteomics : MCP, vol. 18, (no. 8 suppl 1), pp. S192, 2019-May-29. | Journal Article
 
Clonal reconstruction from time course genomic sequencing data
Ismail, Wazim Mohammed and Tang, Haixu
BMC Genomics, vol. 20, (no. S12), pp. 1002, 2019-12-00. | Journal Article
 
Demon in the Variant: Statistical Analysis of DNNs for Robust Backdoor Contamination Detection
Tang, Di⋅Wang, XiaoFeng⋅Tang, Haixu and Zhang, Kehuan
2019-08-01. | Journal Article
 
GenoPri'17: International Workshop on Genome Privacy and Security
Ayday, Erman⋅Naveed, Muhammad and Tang, Haixu
IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 16, (no. 4), pp. 1323, 2019-July-Aug.-1. | Journal Article
 
Identification of N‐terminal protein processing sites by chemical labeling mass spectrometry
Misal, Santosh A⋅Misal, Santosh A⋅Misal, Santosh A.⋅Misal, Santosh A⋅Misal, Santosh A⋅Li, Sujun⋅Li, Sujun⋅Li, Sujun⋅Li, Sujun⋅Li, Sujun⋅Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅Radivojac, Predrag⋅Radivojac, Predrag⋅Radivojac, Predrag⋅Radivojac, Predrag⋅Radivojac, Predrag⋅Reilly, James P⋅Reilly, James P.⋅Reilly, James P⋅Reilly, James P and Reilly, James P
Rapid Communications in Mass Spectrometry, vol. 33, (no. 11), pp. 1023, 15 June 2019. | Journal Article
 
msCRUSH: Fast Tandem Mass Spectral Clustering Using Locality Sensitive Hashing
Wang, Lei⋅Li, Sujun and Tang, Haixu
Journal of proteome research, vol. 18, (no. 1), pp. 158, 2019-Jan-04. | Journal Article
 
The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes
Niccum, Brittany A⋅Lee, Heewook⋅MohammedIsmail, Wazim⋅Tang, Haixu and Foster, Patricia L
mBio, vol. 10, (no. 4), 2019-07-02. | Journal Article
 
Toward Scalable Fully Homomorphic Encryption Through Light Trusted Computing Assistance
Wang, Wenhao⋅Jiang, Yichen⋅Shen, Qintao⋅Huang, Weihao⋅Chen, Hao⋅Wang, Shuang⋅Wang, XiaoFeng⋅Tang, Haixu⋅Chen, Kai⋅Lauter, Kristin and Lin, Dongdai
2019-05-19. | Journal Article
 
When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data
Gürsoy, Gamze⋅Harmanci, Arif⋅Tang, Haixu⋅Ayday, Erman and Brenner, Steven E
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, vol. 24, pp. 390, 2019-00-00. | Journal Article
2018
A Maximum-Likelihood Approach to Estimating the Insertion Frequencies of Transposable Elements from Population Sequencing Data
Jiang, Xiaoqian⋅Tang, Haixu⋅Mohammed Ismail, Wazim and Lynch, Michael
Molecular biology and evolution, vol. 35, (no. 10), pp. 2571, 2018-10-01. | Journal Article
 
A Secure Alignment Algorithm for Mapping Short Reads to Human Genome.
Zhao, Yongan⋅Wang, Xiaofeng and Tang, Haixu
Journal of computational biology : a journal of computational molecular cell biology, May 9, 2018. | Journal Article
 
Constrained De Novo Sequencing of neo-Epitope Peptides using Tandem Mass Spectrometry
Li, Sujun⋅DeCourcy, Alex and Tang, Haixu
Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005-), vol. 10812, pp. 153, 20180101. | Journal Article
 
Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli
Foster, Patricia L⋅Niccum, Brittany A⋅Popodi, Ellen⋅Townes, Jesse P⋅Lee, Heewook⋅MohammedIsmail, Wazim and Tang, Haixu
Genetics, vol. 209, (no. 4), pp. 1042, 2018-Jun-15. | Journal Article
 
iDASH secure genome analysis competition 2017
Wang, XiaoFeng⋅Tang, Haixu⋅Wang, Shuang⋅Jiang, Xiaoqian⋅Wang, Wenhao⋅Bu, Diyue⋅Wang, Lei⋅Jiang, Yicheng and Wang, Chenghong
BMC medical genomics, vol. 11, (no. Suppl 4), pp. 85, 2018-10-11. | Journal Article
 
Insertion sequence elements-mediated structural variations in bacterial genomes
Nzabarushimana, Etienne and Tang, Haixu
Mobile DNA, vol. 9, (no. 1), pp. 29, 2018-00-00. | Journal Article
 
Real-time Protection of Genomic Data Sharing in Beacon Services
Bu, Diyue⋅Wang, Xiaofeng and Tang, Haixu
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, vol. 2017, pp. 54, 2018-00-00. | Journal Article
 
Smooth $q$-Gram, and Its Applications to Detection of Overlaps among Long, Error-Prone Sequencing Reads
Zhang, Haoyu⋅Zhang, Qin and Tang, Haixu
2018-02-04. | Journal Article