153 Publications (Page 2 of 7)
2018
The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of Escherichia coli
Niccum, Brittany A⋅Lee, Heewook⋅MohammedIsmail, Wazim⋅Tang, Haixu and Foster, Patricia L
Genetics, vol. 209, (no. 4), pp. 1054, 2018-Jun-15. | Journal Article
 
Understanding Membership Inferences on Well-Generalized Learning Models
Long, Yunhui⋅Bindschaedler, Vincent⋅Wang, Lei⋅Bu, Diyue⋅Wang, Xiaofeng⋅Tang, Haixu⋅Gunter, Carl A and Chen, Kai
2018-02-13. | Journal Article
2017
A community effort to protect genomic data sharing, collaboration and outsourcing
Wang, Shuang⋅Wang, Shuang⋅Wang, Shuang⋅Jiang, Xiaoqian⋅Jiang, Xiaoqian⋅Jiang, Xiaoqian⋅Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅Wang, Xiaofeng⋅Wang, Xiaofeng⋅Wang, Xiaofeng⋅Bu, Diyue⋅Bu, Diyue⋅Bu, Diyue⋅Carey, Knox⋅Carey, Knox⋅Knox, Carey⋅Dyke, Stephanie O⋅Dyke, Stephanie Om⋅Dyke, Stephanie Om⋅Fox, Dov⋅Fox, Dov⋅Fox, Dov⋅Jiang, Chao⋅Jiang, Chao⋅Jiang, Chao⋅Lauter, Kristin⋅Lauter, Kristin⋅Lauter, Kristin⋅Malin, Bradley⋅Bradley, Malin⋅Malin, Bradley⋅Sofia, Heidi⋅Sofia, Heidi⋅Sofia, Heidi⋅Telenti, Amalio⋅Telenti, Amalio⋅Telenti, Amalio⋅Wang, Lei⋅Wang, Lei⋅Wang, Lei⋅Wang, Wenhao⋅Wang, Wenhao⋅Wang, Wenhao⋅Ohno-Machado, Lucila⋅Ohno-Machado, Lucila and Ohno-Machado, Lucila
NPJ genomic medicine, vol. 2, (no. 1), pp. 6, 2017-00-00. | Journal Article
 
Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution
Kram, Karin E⋅Kram, Karin E⋅Geiger, Christopher⋅Geiger, Christopher⋅Ismail, Wazim Mohammed⋅Ismail, Wazim Mohammed⋅Lee, Heewook⋅Lee, Heewook⋅Tang, Haixu⋅Tang, Haixu⋅Foster, Patricia L⋅Foster, Patricia L⋅Finkel, Steven E and Finkel, Steven E
mSystems, vol. 2, (no. 2), 2017-03-01. | Journal Article
 
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks
Raisaro, Jean Louis⋅Raisaro, Jean Louis⋅Tramèr, Florian⋅Tramèr, Florian⋅Ji, Zhanglong⋅Ji, Zhanglong⋅Bu, Diyue⋅Bu, Diyue⋅Zhao, Yongan⋅Zhao, Yongan⋅Carey, Knox⋅Carey, Knox⋅Lloyd, David⋅Lloyd, David⋅Sofia, Heidi⋅Sofia, Heidi⋅Baker, Dixie⋅Baker, Dixie⋅Flicek, Paul⋅Flicek, Paul⋅Shringarpure, Suyash⋅Shringarpure, Suyash⋅Bustamante, Carlos⋅Bustamante, Carlos⋅Wang, Shuang⋅Wang, Shuang⋅Jiang, Xiaoqian⋅Jiang, Xiaoqian⋅Ohno-Machado, Lucila⋅Ohno-Machado, Lucila⋅Tang, Haixu⋅Tang, Haixu⋅Wang, XiaoFeng⋅Wang, XiaoFeng⋅Hubaux, Jean-Pierre and Hubaux, Jean Pierre
Journal of the American Medical Informatics Association, vol. 24, (no. 4), pp. 805, 20170701. | Journal Article
 
Complete Transcriptome RNA-Seq
Miller, David F B⋅Yan, Pearlly⋅Fang, Fang⋅Buechlein, Aaron⋅Kroll, Karl⋅Frankhouser, David⋅Stump, Cameron⋅Stump, Paige⋅Ford, James B⋅Tang, Haixu⋅Michaels, Scott⋅Matei, Daniela⋅Huang, Tim H⋅Chien, Jeremy⋅Liu, Yunlong⋅Rusch, Douglas B and Nephew, Kenneth P
Methods in molecular biology (Clifton, N.J.), vol. 1513, pp. 141, 2017-00-00. | Journal Article
 
Improving de novo metatranscriptome assembly via machine learning algorithms
Mohsen, Hussein⋅Mohsen, Hussein⋅Ye, Yuzhen⋅Ye, Yuzhen⋅Tang, Haixu and Tang, Haixu
International Journal of Computational Biology and Drug Design, vol. 10, (no. 2), pp. 91, 2017-00-00. | Journal Article
 
Insertion Polymorphisms of Mobile Genetic Elements in Sexual and Asexual Populations of Daphnia pulex
Jiang, Xiaoqian⋅Tang, Haixu⋅Ye, Zhiqiang and Lynch, Michael
Genome biology and evolution, vol. 9, (no. 2), pp. 374, 2017-02-01. | Journal Article
 
ISEScan: automated identification of insertion sequence elements in prokaryotic genomes
Xie, Zhiqun and Tang, Haixu
Bioinformatics (Oxford, England), vol. 33, (no. 21), pp. 3347, 2017-Nov-01. | Journal Article
 
STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data
Tang, Haixu and Nzabarushimana, Etienne
BMC bioinformatics, vol. 18, (no. Suppl 11), pp. 398, 2017-Oct-03. | Journal Article
2016
A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics
Tang, Haixu⋅Tang, Haixu⋅Li, Sujun⋅Li, Sujun⋅Ye, Yuzhen and Ye, Yuzhen
PLoS computational biology, vol. 12, (no. 12), pp. e1005224, 2016-12-00. | Journal Article
 
Automated Glycan Sequencing from Tandem Mass Spectra of N-Linked Glycopeptides
Yu, Chuan-Yih⋅Yu, Chuan-Yih⋅Mayampurath, Anoop⋅Mayampurath, Anoop⋅Zhu, Rui⋅Zhu, Rui⋅Zacharias, Lauren⋅Zacharias, Lauren⋅Song, Ehwang⋅Song, Ehwang⋅Wang, Lei⋅Wang, Lei⋅Mechref, Yehia⋅Mechref, Yehia⋅Tang, Haixu and Tang, Haixu
Analytical chemistry, vol. 88, (no. 11), pp. 5732, 2016-06-07. | Journal Article
 
Computational Methods in Mass Spectrometry-Based Proteomics.
Li, Sujun and Tang, Haixu
Advances in experimental medicine and biology, vol. 939, pp. 63-89, 2016. | Journal Article
 
Impact of Amidination on Peptide Fragmentation and Identification in Shotgun Proteomics
Li, Sujun⋅Li, Sujun⋅Dabir, Aditi⋅Dabir, Aditi⋅Misal, Santosh A⋅Misal, Santosh A⋅Tang, Haixu⋅Tang, Haixu⋅Radivojac, Predrag⋅Radivojac, Predrag⋅Reilly, James P and Reilly, James P
Journal of proteome research, vol. 15, (no. 10), pp. 3665, 2016-Oct-07. | Journal Article
 
Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli
Lee, Heewook⋅Lee, Heewook⋅Doak, Thomas G⋅Doak, Thomas G⋅Popodi, Ellen⋅Popodi, Ellen⋅Foster, Patricia L⋅Foster, Patricia L⋅Tang, Haixu and Tang, Haixu
Nucleic acids research, vol. 44, (no. 15), pp. 7119, 2016-09-06. | Journal Article
 
MGEScan: a Galaxy-based system for identifying retrotransposons in genomes
Lee, Hyungro⋅Lee, Hyungro⋅Lee, Minsu⋅Lee, Minsu⋅Mohammed Ismail, Wazim⋅Mohammed Ismail, Wazim⋅Rho, Mina⋅Rho, Mina⋅Fox, Geoffrey C⋅Fox, Geoffrey C⋅Oh, Sangyoon⋅Oh, Sangyoon⋅Tang, Haixu and Tang, Haixu
Bioinformatics (Oxford, England), vol. 32, (no. 16), pp. 2504, 2016-08-15. | Journal Article
 
On the privacy risks of sharing clinical proteomics data
Li, Sujun⋅Li, Sujun⋅Bandeira, Nuno⋅Bandeira, Nuno⋅Wang, Xiaofeng⋅Wang, Xiaofeng⋅Tang, Haixu and Tang, Haixu
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, vol. 2016, pp. 131, 2016-00-00. | Journal Article
 
Protecting genomic data analytics in the cloud: state of the art and opportunities
Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅Jiang, Xiaoqian⋅Jiang, Xiaoqian⋅Jiang, Xiaoqian⋅Jiang, Xiaoqian⋅Wang, Xiaofeng⋅Wang, Xiaofeng⋅Wang, Xiaofeng⋅Wang, Xiaofeng⋅Wang, Shuang⋅Wang, Shuang⋅Wang, Shuang⋅Wang, Shuang⋅Sofia, Heidi⋅Sofia, Heidi⋅Sofia, Heidi⋅Sofia, Heidi⋅Fox, Dov⋅Fox, Dov⋅Fox, Dov⋅Fox, Dov⋅Lauter, Kristin⋅Lauter, Kristin⋅Lauter, Kristin⋅Lauter, Kristin⋅Malin, Bradley⋅Malin, Bradley⋅Bradley, Malin⋅Bradley, Malin⋅Telenti, Amalio⋅Telenti, Amalio⋅Telenti, Amalio⋅Telenti, Amalio⋅Xiong, Li⋅Li, Xiong⋅Xiong, Li⋅Li, Xiong⋅Ohno-Machado, Lucila⋅Ohno-Machado, Lucila⋅Ohno-Machado, Lucila and Ohno-Machado, Lucila
BMC medical genomics, vol. 9, (no. 1), pp. 63, 2016-10-13. | Journal Article
 
Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations inEscherichia coli
Bhagwat, Ashok S⋅Bhagwat, Ashok S⋅Hao, Weilong⋅Hao, Weilong⋅Townes, Jesse P⋅Townes, Jesse P⋅Lee, Heewook⋅Lee, Heewook⋅Tang, Haixu⋅Tang, Haixu⋅Foster, Patricia L and Foster, Patricia L
Proceedings of the National Academy of Sciences, vol. 113, (no. 8), pp. 2181, 2016-02-23. | Journal Article
 
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis
Ye, Yuzhen⋅Ye, Yuzhen⋅Tang, Haixu and Tang, Haixu
Bioinformatics (Oxford, England), vol. 32, (no. 7), pp. 1008, 2016-04-01. | Journal Article
 
XLSearch: a Probabilistic Database Search Algorithm for Identifying Cross-Linked Peptides
Ji, Chao⋅Ji, Chao⋅Ji, Chao⋅Li, Sujun⋅Li, Sujun⋅Li, Sujun⋅Reilly, James P⋅Reilly, James P⋅Reilly, James P⋅Radivojac, Predrag⋅Radivojac, Predrag⋅Radivojac, Predrag⋅Tang, Haixu⋅Tang, Haixu and Tang, Haixu
Journal of proteome research, vol. 15, (no. 6), pp. 1841, 2016-06-03. | Journal Article
2015
Automated annotation and quantitation of glycans by liquid chromatography/electrospray ionization mass spectrometric analysis using the MultiGlycan-ESI computational tool.
Hu, Yunli⋅Zhou, Shiyue⋅Yu, Chuan-Yih⋅Tang, Haixu and Mechref, Yehia
Rapid communications in mass spectrometry : RCM, vol. 29, (no. 1), pp. 135-142, January 15, 2015. | Journal Article
 
Bioinformatics drives the applications of next-generation sequencing in translational biomedical research
Tang, Haixu⋅Tang, Haixu⋅Zhao, Zhongming and Zhao, Zhongming
Methods, vol. 79-80, pp. 2, 2015-06-01. | Journal Article
 
Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery.
Zhao, Yongan⋅Wang, Xiaofeng⋅Jiang, Xiaoqian⋅Ohno-Machado, Lucila and Tang, Haixu
Journal of the American Medical Informatics Association : JAMIA, vol. 22, (no. 1), pp. 100-108, January 2015. | Journal Article
 
Comprehensive Characterization of the Glycosylation Site of Human PSA Prompted by Missense Mutation using LC-MS/MS
Song, Ehwang⋅Song, Ehwang⋅Hu, Yunli⋅Hu, Yunli⋅Yu, Chuan-Yih⋅Hussein, Ahmed⋅Yu, Chuan-Yih⋅Tang, Haixu⋅Tang, Haixu⋅Mechref, Yehia and Mechref, Yehia
Journal of proteome research, vol. 14, (no. 7), pp. 2883, 2015-06-24. | Journal Article