67 Publications (Page 3 of 3)
2007
iGibbs: improving Gibbs motif sampler for proteins by sequence clustering and iterative pattern sampling.
Kim, Sun⋅Wang, Zhiping and Dalkilic, Mehmet M
Proteins, vol. 66, (no. 3), pp. 671-81, 2007/Feb/15. | Journal Article
2006
A hybrid gene team model and its application to genome analysis.
Kim, Sun⋅Choi, Jeong-Hyeon⋅Saple, Amit and Yang, Jiong
Journal of bioinformatics and computational biology, vol. 4, (no. 2), pp. 171-96, 2006/Apr. | Journal Article
 
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-[alpha]
Li, Lang⋅Cheng, Alfred S⋅Jin, Victor⋅Paik, Henry H⋅Fan, Meiyun⋅Li, Xiaoman⋅Zhang, Wei⋅Robarge, Jason⋅Balch, Curtis⋅Davuluri, Ramana V⋅Kim, Sun⋅Huang, Tim H and Nephew, Ken
Bioinformatics, vol. 22, (no. 18), pp. 2210, Sep 15, 2006. | Journal Article
 
ARCS: an aggregated related column scoring scheme for aligned sequences
Song, Bin⋅Choi, Jeong-Hyeon⋅Chen, Guangyu⋅Szymanski, Jacek⋅Zhang, Guo Qiang⋅Tung, Anthony K⋅Kang, Jaewoo⋅Kim, Sun and Yang, Jiong
Bioinformatics, vol. 22, (no. 19), pp. 2326, Oct 1, 2006. | Journal Article
 
BAG: a graph theoretic sequence clustering algorithm
Kim, Sun and Lee, Jason
International Journal of Data Mining and Bioinformatics, vol. 1, (no. 2), pp. 178-200, 2006. | Journal Article
 
COMPAM :visualization of combining pairwise alignments for multiple genomes
Lee, Do Hoon⋅Choi, Jeong-Hyeon⋅Dalkilic, Mehmet M and Kim, Sun
Bioinformatics, vol. 22, (no. 2), pp. 242-4, Jan 15, 2006. | Journal Article
 
Data mining and bioinformatics : first international workshop, VDMB 2006, Seoul, Korea, September 11, 2006, revised selected papers / Mehmet M. Dalkilic, Sun Kim, Jiong Yang (eds.).
Dalkilic, Mehmet M⋅Kim, Sun and Yang, Jiong
Springer. 2006. | Book
 
Prognostic DNA Methylation Biomarkers in Ovarian Cancer
Wei, Susan H⋅Balch, Curtis⋅Paik, Henry H⋅Kim, Yoo-Sung⋅Baldwin, Rae L⋅Liyanarachchi, Sandya⋅Li, Lang⋅Wang, Zailong⋅Wan, Joseph C⋅Davuluri, Ramana V⋅Karlan, Beth Y⋅Gifford, Gillian⋅Brown, Robert⋅Kim, Sun⋅Huang, Tim H and Nephew, Ken
Clinical Cancer Research, vol. 12, (no. 9), pp. 2788-2794, 2006. | Journal Article
 
REFINEMENT: a search framework for the identification of interferon-responsive elements in DNA sequences--a case study with ISRE and GAS.
Tsukahara, Takuma⋅Kim, Sun and Taylor, Milton W
Computational biology and chemistry, vol. 30, (no. 2), pp. 134-147, April 2006. | Journal Article
2005
GAME: A simple and efficient whole genome alignment method using maximal exact match filtering
Choi, J-H⋅Cho, H-G and Kim, Sun
Computational Biology and Chemistry, vol. 29, (no. 3), pp. 244-253, 2005. | Journal Article
 
Gene teams with relaxed proximity constraint.
Kim, Sun⋅Choi, Jeong-Hyeon and Yang, Jiong
Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference, pp. 44-55, 2005. | Journal Article
 
New anti-cancer strategies: epigenetic therapies and biomarkers.
Balch, Curtis⋅Montgomery, John S⋅Paik, Hyun-Il⋅Kim, Sun⋅Huang, Tim H and Nephew, Ken
Frontiers in bioscience : a journal and virtual library, vol. 10, pp. 1897-931, 2005. | Journal Article
 
PLATCOM: a Platform for Computational Comparative Genomics
Choi, Kwangmin⋅Ma, Yu⋅Choi, Jeong-Heyon and Kim, Sun
Bioinformatics, vol. 21, (no. 10), pp. 2514-6, May 15, 2005. | Journal Article
2001
The Genome of Agrobacterium tumefaciens C58: Insights into the evolution and biology of a natural genetic engineer
Sun Kim et.al and Kim, Sun
(pp. 2317-2323). 2001
1999
AMASS: A Structured Pattern Matching Approach to Shotgun Sequence Assembly
Kim, Sun and Segre, Alberto M
Journal of Computational Biology, vol. 6, (no. 2), pp. 163-186, 1999. | Journal Article
 
“A New String Matching Algorithm Using Partitioning and Hashing Eciently,”
Kim, Sun
1999
1997
Amass: A structured pattern matching approach to shotgun sequence assembly (Dissertation)
Kim, Sun (1997).