67 Publications (Page 2 of 3)
2012
GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis.
Pejaver, Vikas R⋅An, Jaehyun⋅Rhee, Sungmin⋅Bhan, Ankita⋅Choi, Jeong-Hyeon⋅Liu, Boshu⋅Lee, Heewook⋅Brown, Pamela J⋅Kysela, David⋅Brun, Yves V and Kim, Sun
Bioinformatics (Oxford, England), vol. 28, (no. 11), pp. 1527-9, 2012/Jun/1. | Journal Article
 
Suppression of ribosomal protein synthesis and protein translation factors by Peg-interferon alpha/ribavirin in HCV patients blood mononuclear cells (PBMC)
Gupta, Rahul⋅Kim, Sun and Taylor, Milton
Journal of Translational Medicine , vol. 10, pp. 54, 2012. | Journal Article
2011
Building interacting partner predictors using co-varying residue pairs between histidine kinase and response regulator pairs of 48 bacterial two-component systems.
Choi, Kwangmin and Kim, Sun
Proteins, vol. 79, (no. 4), pp. 1118-1131, April 2011. | Journal Article
 
Oncogenic ETS proteins mimic activated RAS/MAPK signaling in prostate cells
Hollenhorst, Peter C⋅Hollenhorst, Peter C⋅Ferris, Mary W⋅Ferris, Mary W⋅Hull, Megan A⋅Hull, Megan A⋅Chae, Heejoon⋅Chae, Heejoon⋅Kim, Sun⋅Kim, Sun⋅Graves, Barbara J and Graves, Barbara J
Genes & Development, vol. 25, (no. 20), pp. 2147-2157, 2011. | Journal Article
 
Sequence-based enzyme catalytic domain prediction using clustering and aggregated mutual information content.
Choi, Kwangmin and Kim, Sun
Journal of bioinformatics and computational biology, vol. 9, (no. 5), pp. 597-611, October 2011. | Journal Article
2010
Data mining for the study of disease genes and proteins
Kim, Sun
Artificial Intelligence in Medicine, vol. 49, (no. 3), pp. 134, 2010. | Journal Article
 
Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing.
Choi, Jeong-Hyeon⋅Choi, Jeong-Hyeon⋅Li, Yajun⋅Li, Yajun⋅Li, Yajun⋅Guo, Juyuan⋅Guo, Juyuan⋅Guo, Juyuan⋅Pei, Lirong⋅Pei, Lirong⋅Pei, Lirong⋅Rauch, Tibor A⋅Rauch, Tibor A⋅Rauch, Tibor A⋅Kramer, Robin S⋅Kramer, Robin S⋅Kramer, Robin S⋅Macmil, Simone L⋅Macmil, Simone L⋅Macmil, Simone L⋅Wiley, Graham B⋅Wiley, Graham B⋅Wiley, Graham B⋅Bennett, Lynda B⋅Bennett, Lynda⋅Bennett, Lynda B⋅Schnabel, Jennifer L⋅Schnabel, Jennifer L⋅Schnabel, Jennifer L⋅Taylor, Kristen H⋅Taylor, Kristen H⋅Taylor, Kristen H⋅Kim, Sun⋅Kim, Sun⋅Sun, Kim⋅Xu, Dong⋅Xu, Dong⋅Xu, Dong⋅Sreekumar, Arun⋅Sreekumar, Arun⋅Sreekumar, Arun⋅Pfeifer, Gerd P⋅Pfeifer, Gerd P⋅Pfeifer, Gerd P⋅Roe, Bruce A⋅Roe, Bruce A⋅Roe, Bruce A⋅Caldwell, Charles W⋅Caldwell, Charles W⋅Caldwell, Charles W⋅Bhalla, Kapil N⋅Bhalla, Kapil N⋅Bhalla, Kapil N⋅Shi, Huidong⋅Shi, Huidong and Shi, Huidong
PloS one, vol. 5, (no. 9), 2010. | Journal Article
 
LTR retroelements in the genome of Daphnia pulex
Rho, Mina⋅Schaack, Sarah⋅Gao, Xiang⋅Kim, Sun⋅Lynch, Michael and Tang, Haixu
BMC Genomics, vol. 11, pp. 425-425, 2010. | Journal Article
 
Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum.
Lu, Yih-Kuang⋅Marden, Jeremiah⋅Han, Mira⋅Swingley, Wesley D⋅Mastrian, Stephen D⋅Chowdhury, Sugata R⋅Hao, Jicheng⋅Helmy, Tamer⋅Kim, Sun⋅Kurdoglu, Ahmet A⋅Matthies, Heather J⋅Rollo, David⋅Stothard, Paul⋅Blankenship, Robert E⋅Bauer, Carl E and Touchman, Jeffrey W
BMC genomics, vol. 11, pp. 325, 2010. | Journal Article
2009
Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance
Xin, Fuxiao⋅Li, Meng⋅Balch, Curtis⋅Thomson, Michael⋅Fan, Meiyun⋅Liu, Yunlong⋅Hammond, Scott M⋅Kim, Sun and Nephew, Ken
Bioinformatics, vol. 25, (no. 4), pp. 430-434, 2009. | Journal Article
 
Independent mammalian genome contractions following the KT boundary.
Rho, Mina⋅Rho, Mina⋅Zhou, Mo⋅Zhou, Mo⋅Gao, Xiang⋅Gao, Xiang⋅Kim, Sun⋅Kim, Sun⋅Tang, Haixu⋅Tang, Haixu⋅Lynch, Michael and Lynch, Michael
Genome biology and evolution, vol. 1, pp. 2-12, May 5, 2009. | Journal Article
 
Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer.
Li, Meng⋅Balch, Curtis⋅Montgomery, John S⋅Jeong, Mikyoung⋅Chung, Jae H⋅Yan, Pearlly S⋅Huang, Tim H⋅Kim, Sun and Nephew, Ken
BMC medical genomics, vol. 2, pp. 34, 2009. | Journal Article
 
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression
Nam, Seungyoon⋅Li, Meng⋅Choi, Kwangmin⋅Balch, Curtis⋅Kim, Sun and Nephew, Ken
Nucleic Acids Research, vol. 37, (no. suppl_2), pp. W356-W362, 2009. | Journal Article
 
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression.
Nam, Seungyoon⋅Li, Meng⋅Choi, Kwangmin⋅Balch, Curtis⋅Kim, Sun and Nephew, Ken
Nucleic acids research, vol. 37, (no. Web Server issue), pp. W356-62, 2009/Jul. | Journal Article
 
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression.
Nam, Seungyoon⋅Li, Meng⋅Choi, Kwangmin⋅Balch, Curtis⋅Kim, Sun and Nephew, Ken
Nucleic acids research., vol. 37, pp. W356-W362, 2009. | Journal Article
2008
A gene pattern mining algorithm using interchangeable gene sets for prokaryotes
Hu, Meng⋅Choi, Kwangmin⋅Su, Wei⋅Kim, Sun and Yang, Jiong
BMC Bioinformatics, vol. 9, pp. 124-124, 2008. | Journal Article
 
A gene pattern mining algorithm using interchangeable gene sets for prokaryotes.
Hu, Meng⋅Choi, Kwangmin⋅Su, Wei⋅Kim, Sun and Yang, Jiong
BMC bioinformatics, vol. 9, pp. 124, 2008. | Journal Article
 
ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts.
Choi, Kwangmin⋅Choi, Kwangmin⋅Kim, Sun and Kim, Sun
BMC bioinformatics, vol. 9, pp. 145, March 6, 2008. | Journal Article
 
Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells
Li, Meng⋅Paik, Hyun-il H⋅Balch, Curtis⋅Kim, Yoosung⋅Li, Lang⋅Huang, Tim H⋅Nephew, Ken and Kim, Sun
Bioinformatics, vol. 24, (no. 16), pp. 1745-8, Aug 15, 2008. | Journal Article
 
Genome sequencing technology and algorithms
Kim, Sun⋅Tang, Haixu and Mardis, Elaine
c2008
 
Genome sequencing technology and algorithms
Kim, Sun
2008. | Book
 
Predicting DNA methylation susceptibility using CpG flanking sequences.
Kim, S⋅Li, M⋅Paik, H⋅Nephew, Ken⋅Shi, Huidong⋅Kramer, R⋅Xu, Dong and Huang, T H
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pp. 315-26, 2008. | Journal Article
2007
A study of residue correlation within protein sequences and its application to sequence classification.
Hemmerich, Chris and Kim, Sun
EURASIP journal on bioinformatics & systems biology, pp. 87356, 2007. | Journal Article
 
CGAS: a comparative genome annotation system.
Choi, Kwangmin⋅Yang, Youngik and Kim, Sun
Methods in molecular biology (Clifton, N.J.), vol. 395, pp. 133-46, 2007. | Journal Article
 
De novo identification of LTR retrotransposons in eukaryotic genomes.
Rho, Mina⋅Choi, Jeong-Hyeon⋅Kim, Sun⋅Lynch, Michael and Tang, Haixu
BMC genomics, vol. 8, pp. 90, 2007. | Journal Article