62 Publications (Page 1 of 3)
2020
Charge Detection Mass Spectrometry Measurements of Exosomes and other Extracellular Particles Enriched from Bovine MilkBrown, Brooke A⋅Brown, Brooke A⋅Brown, Brooke A⋅Zeng, Xuyao⋅Zeng, Xuyao⋅Zeng, Xuyao⋅Todd, Aaron R⋅Todd, Aaron R⋅Todd, Aaron R⋅Barnes, Lauren F⋅Barnes, Lauren F⋅Barnes, Lauren F⋅Winstone, Jonathan M A⋅Winstone, Jonathan M A⋅Winstone, Jonathan M A⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Novotny, Milos V⋅Novotny, Milos V⋅Novotny, Milos V⋅Jarrold, Martin F⋅Jarrold, Martin F⋅Jarrold, Martin F⋅Clemmer, David E⋅Clemmer, David E and Clemmer, David EAnalytical chemistry, vol. 92, (no. 4), pp. 3292, 2020-02-18.
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Comparative Proteomics Reveal Me31B’s Interactome Dynamics, Expression Regulation, and Assembly Mechanism into Germ Granules during Drosophila Germline DevelopmentMcCambridge, Aidan⋅Solanki, Dhruv⋅Olchawa, Nicholas⋅Govani, Neal⋅Trinidad, Jonathan C and Gao, MingScientific Reports, vol. 10, (no. 1), pp. 13, 2020-12-00.
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2019
An Acinetobacter baumannii, Zinc-Regulated Peptidase Maintains Cell Wall Integrity during Immune-Mediated Nutrient SequestrationLonergan, Zachery R⋅Lonergan, Zachery R⋅Nairn, Brittany L⋅Nairn, Brittany L⋅Wang, Jiefei⋅Wang, Jiefei⋅Hsu, Yen-Pang⋅Hsu, Yen-Pang⋅Hesse, Laura E⋅Hesse, Laura E⋅Beavers, William N⋅Beavers, William N⋅Chazin, Walter J⋅Chazin, Walter J⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅VanNieuwenhze, Michael S⋅VanNieuwenhze, Michael S⋅Giedroc, David P⋅Giedroc, David P⋅Skaar, Eric P and Skaar, Eric PCell Reports, vol. 26, (no. 8), pp. 2018.e6, 2019-02-19.
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Dissecting the Components of Sindbis Virus from Arthropod and Vertebrate Hosts: Implications for Infectivity DifferencesDunbar, Carmen A⋅Dunbar, Carmen A⋅Dunbar, Carmen A⋅Rayaprolu, Vamseedhar⋅Rayaprolu, Vamseedhar⋅Rayaprolu, Vamseedhar⋅Wang, Joseph C-Y⋅Wang, Joseph C-Y⋅Wang, Joseph C-Y⋅Brown, Christopher J⋅Brown, Christopher J⋅Brown, Christopher J⋅Leishman, Emma⋅Leishman, Emma⋅Leishman, Emma⋅Jones-Burrage, Sara⋅Jones-Burrage, Sara⋅Jones-Burrage, Sara⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Bradshaw, Heather B⋅Bradshaw, Heather B⋅Bradshaw, Heather B⋅Clemmer, David E⋅Clemmer, David E⋅Clemmer, David E⋅Mukhopadhyay, Suchetana⋅Mukhopadhyay, Suchetana⋅Mukhopadhyay, Suchetana⋅Jarrold, Martin F⋅Jarrold, Martin F and Jarrold, Martin FACS infectious diseases, vol. 5, (no. 6), pp. 902, 2019-Jun-14.
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Multi-metal Restriction by Calprotectin Impacts De Novo Flavin Biosynthesis in Acinetobacter baumanniiWang, Jiefei⋅Wang, Jiefei⋅Lonergan, Zachery R⋅Lonergan, Zachery R⋅Gonzalez-Gutierrez, Giovanni⋅Gonzalez-Gutierrez, Giovanni⋅Nairn, Brittany L⋅Nairn, Brittany L⋅Maxwell, Christina N⋅Maxwell, Christina N⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Andreini, Claudia⋅Andreini, Claudia⋅Karty, Jonathan A⋅Karty, Jonathan A⋅Chazin, Walter J⋅Chazin, Walter J⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Skaar, Eric P⋅Skaar, Eric P⋅Giedroc, David P and Giedroc, David PCell Chemical Biology, vol. 26, (no. 5), pp. 755.e7, 2019-05-16.
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2018
Distinguishing Sulfotyrosine Containing Peptides from their Phosphotyrosine Counterparts Using Mass SpectrometryChen, Guangming⋅Chen, Guangming⋅Chen, Guangming⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Trinidad, Jonathan C⋅Trinidad, Jonathan⋅Trinidad, Jonathan⋅Dann III, Charles⋅Dann, Charles and Dann III, CharlesJournal of The American Society for Mass Spectrometry, vol. 29, (no. 3), pp. 462, 20180300.
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Hydrogen Sulfide Sensing through Reactive Sulfur Species (RSS) and Nitroxyl (HNO) in Enterococcus faecalisShen, Jiangchuan⋅Shen, Jiangchuan⋅Shen, Jiangchuan⋅Walsh, Brenna J C⋅Walsh, Brenna J. C⋅Walsh, Brenna J C⋅Flores-Mireles, Ana Lidia⋅Flores-Mireles, Ana Lidia⋅Flores-Mireles, Ana Lidia⋅Peng, Hui⋅Peng, Hui⋅Peng, Hui⋅Zhang, Yifan⋅Zhang, Yifan⋅Zhang, Yifan⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Hultgren, Scott J⋅Hultgren, Scott J⋅Hultgren, Scott J⋅Giedroc, David P⋅Giedroc, David P and Giedroc, David PACS Chemical Biology, vol. 13, (no. 6), pp. 1620, 20180615.
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Multiple Flagellin Proteins Have Distinct and Synergistic Roles in Agrobacterium tumefaciens MotilityMohari, Bitan⋅Mohari, Bitan⋅Mohari, Bitan⋅Thompson, Melene A⋅Thompson, Melene A⋅Thompson, Melene A⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Setayeshgar, Sima⋅Setayeshgar, Sima⋅Setayeshgar, Sima⋅Fuqua, Clay⋅Fuqua, Clay and Fuqua, ClayJournal of bacteriology, vol. 200, (no. 23), 2018-Dec-01.
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Proteome changes in the aging Drosophila melanogaster headBrown, Christopher J⋅Brown, Christopher J⋅Kaufman, Thomas⋅Kaufman, Thomas⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Clemmer, David E and Clemmer, David EInternational Journal of Mass Spectrometry, vol. 425, pp. 46, February 2018.
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Thioredoxin Profiling of Multiple Thioredoxin-Like Proteins in Staphylococcus aureusPeng, Hui⋅Peng, Hui⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Giedroc, David P and Giedroc, David PFrontiers in Microbiology, vol. 9, 2018-10-01.
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2017
A high-throughput mass spectrometry-based assay for identifying biochemical function of putative glycosidasesPeng, Tianyuan⋅Peng, Tianyuan⋅Nagy, Gabe⋅Nagy, Gabe⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Jackson, Joy Marie⋅Jackson, Joy Marie⋅Pohl, Nicola L. B and Pohl, Nicola L. BChembiochem : a European journal of chemical biology, vol. 18, (no. 23), pp. 2311, 2017-10-27.
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Anin vivoproteomic analysis of the Me31B interactome inDrosophilagerm granulesDeHaan, Hunter⋅McCambridge, Aidan⋅Armstrong, Brittany⋅Cruse, Carlie⋅Solanki, Dhruv⋅Trinidad, Jonathan C⋅Arkov, Alexey L and Gao, MingFEBS Letters, vol. 591, (no. 21), pp. 3547, 2017-11-00.
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Biological and Chemical Adaptation to Endogenous Hydrogen Peroxide Production in Streptococcus pneumoniae D39Lisher, John P⋅Lisher, John P⋅Tsui, Ho-Ching Tiffany⋅Tsui, Ho-Ching Tiffany⋅Ramos-Montañez, Smirla⋅Ramos-Montañez, Smirla⋅Hentchel, Kristy L⋅Hentchel, Kristy L⋅Martin, Julia E⋅Martin, Julia E⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Winkler, Malcolm E⋅Winkler, Malcolm E⋅Giedroc, David P and Giedroc, David PmSphere, vol. 2, (no. 1), 2017-01-01.
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Characterization of lectin binding affinities via direct LC-MS profiling: implications for glycopeptide enrichment and separation strategiesZhu, Feifei⋅Zhu, Feifei⋅Clemmer, David E⋅Clemmer, David E⋅Trinidad, Jonathan C and Trinidad, Jonathan CThe Analyst, vol. 142, (no. 1), pp. 74, 2017-00-00.
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Hydrogen Sulfide and Reactive Sulfur Species Impact Proteome S‑Sulfhydration and Global Virulence Regulation in Staphylococcus aureusPeng, Hui⋅Peng, Hui⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Palmer, Lauren D⋅Palmer, Lauren D⋅Kehl-Fie, Thomas E⋅Kehl-Fie, Thomas E⋅Skaar, Eric P⋅Skaar, Eric P⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Giedroc, David Peter and Giedroc, David PACS Infectious Diseases, vol. 3, (no. 10), pp. 755, 20171013.
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Identification and characterization of a heterotrimeric archaeal DNA polymerase holoenzymeYan, Jiangyu⋅Yan, Jiangyu⋅Beattie, Thomas⋅Beattie, Thomas⋅Rojas, Adriana⋅Rojas, Adriana⋅Schermerhorn, Kelly⋅Schermerhorn, Kelly⋅Gristwood, Tamzin⋅Gristwood, Tamzin⋅Trinidad, Jonathan⋅Trinidad, Jonathan⋅Albers, Sonja⋅Albers, Sonja⋅Roversi, Pietro⋅Roversi, Pietro⋅Gardner, Andrew⋅Gardner, Andrew⋅Abrescia, Nicola G⋅Abrescia, Nicola⋅Bell, Stephen and Bell, Stephen2017-05-02.
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Palmitoylation of Sindbis Virus TF Protein Regulates Its Plasma Membrane Localization and Subsequent Incorporation into VirionsRamsey, Jolene⋅Renzi, Emily C⋅Arnold, Randy J⋅Trinidad, Jonathan C and Mukhopadhyay, SuchetanaJournal of virology, vol. 91, (no. 3), 2017-Feb-01.
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Reduced Insulin/IGF-1 Signaling Restores the Dynamic Properties of Key Stress Granule Proteins during AgingLechler, Marie C⋅Lechler, Marie C⋅Crawford, Emily D⋅Crawford, Emily D⋅Groh, Nicole⋅Groh, Nicole⋅Widmaier, Katja⋅Widmaier, Katja⋅Jung, Raimund⋅Jung, Raimund⋅Kirstein, Janine⋅Kirstein, Janine⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Burlingame, Alma L⋅Burlingame, Alma L⋅David, Della C and David, Della CCell Reports, vol. 18, (no. 2), pp. 467, 2017-01-10.
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Sulfide-responsive transcriptional repressor SqrR functions as a master regulator of sulfide-dependent photosynthesisShimizu, Takayuki⋅Shimizu, Takayuki⋅Shimizu, Takayuki⋅Shen, Jiangchuan⋅Shen, Jiangchuan⋅Shen, Jiangchuan⋅Fang, Mingxu⋅Fang, Mingxu⋅Fang, Mingxu⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Hori, Koichi⋅Hori, Koichi⋅Hori, Koichi⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Bauer, Carl E⋅Bauer, Carl E⋅Bauer, Carl E⋅Giedroc, David P⋅Giedroc, David P⋅Giedroc, David P⋅Masuda, Shinji⋅Masuda, Shinji and Masuda, ShinjiProceedings of the National Academy of Sciences of the United States of America, vol. 114, (no. 9), pp. 2360, 2017-02-28.
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2016
Archaeal orthologs of Cdc45 and GINS form a stable complex that stimulates the helicase activity of MCMXu, Yuli⋅Xu, Yuli⋅Gristwood, Tamzin⋅Gristwood, Tamzin⋅Hodgson, Ben⋅Hodgson, Ben⋅Trinidad, Jonathan⋅Trinidad, Jonathan⋅Albers, Sonja-Verena⋅Albers, Sonja-Verena⋅Bell, Stephen and Bell, StephenProceedings of the National Academy of Sciences of the United States, vol. 113, (no. 47), pp. 13390, 20161122.
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Characterization of lectin binding affinities via direct LC-MS profiling: implications for glycopeptide enrichment and separation strategiesElectronic supplementary information (ESI) available. See DOI: 10.1039/c6an02043gZhu, Feifei⋅Zhu, Feifei⋅Clemmer, David E⋅Clemmer, David E⋅Trinidad, Jonathan C and Trinidad, Jonathan C(no. 1), pp. 74, 20161219.
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Disparate Regulatory Mechanisms Control Fat3 and P75.sup.NTR Protein Transport through a Conserved Kif5-Interaction DomainCheng, Haixia⋅Cheng, Haixia⋅Burroughs-Garcia, Jessica⋅Burroughs-Garcia, Jessica⋅Birkness, Jacqueline⋅Birkness, Jacqueline⋅Trinidad, Jonathan⋅Trinidad, Jonathan⋅Deans, Michael and Deans, MichaelPLoS ONE, vol. 11, (no. 10), pp. e0165519, 20161027.
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Introducing Students to Protein Analysis Techniques: Separation and Comparative Analysis of Gluten Proteins in Various Wheat StrainsPirinelli, Alyssa⋅Pirinelli, Alyssa L⋅Trinidad, Jonathan⋅Trinidad, Jonathan C⋅Pohl, Nicola L. B and Pohl, NicolaJournal of Chemical Education, vol. 93, (no. 2), pp. 334, 20160209.
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Staphylococcus aureus sqr Encodes a Type II Sulfide:Quinone Oxidoreductase and Impacts Reactive Sulfur Speciation in CellsShen, Jiangchuan⋅Shen, Jiangchuan⋅Shen, Jiangchuan⋅Peng, Hui⋅Peng, Hui⋅Peng, Hui⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Zhang, Yixiang⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Giedroc, David P⋅Giedroc, David P and Giedroc, David PBiochemistry, vol. 55, (no. 47), pp. 6534, 20161129.
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2015
Glycopeptide Site Heterogeneity and Structural Diversity Determined by Combined Lectin Affinity Chromatography/IMS/CID/MS TechniquesZhu, Feifei⋅Zhu, Feifei⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Clemmer, David E and Clemmer, David EJournal of the American Society for Mass Spectrometry, vol. 26, (no. 7), pp. 1092-1102, Jul 2015.
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