148 Publications (Page 1 of 6)
2023
Abstract 2756: Custom G4 DNA microarray can determine large-scale binding selectivity of small molecules and proteins to oncogene G-quadruplexes
Wu, Guanhui⋅Chen, Luying⋅Huseman, Kristen⋅Tillo, Desiree⋅Ray, Sreejana⋅Chang, Ta-Chau⋅Schneekloth, John S.⋅Vinson, Charles and Yang, Danzhou
Cancer research (Chicago, Ill.), vol. 83, (no. 7_Supplement), pp. 2756, 2023-04-04. | Journal Article
 
Abstract 3103: Dual targeting MYC G-quadruplex and topoisomerase I by indenoisoquinolines for cancer therapy
Yang, Danzhou⋅Cushman, Mark⋅Wang, Kai-Bo⋅Elsayed, Mohamed S.⋅Wu, Guanhui⋅Buric, Adam J. and DeMoss, Mercedes
Cancer research (Chicago, Ill.), vol. 83, (no. 7_Supplement), pp. 3103, 2023-04-04. | Journal Article
 
Abstract 3840: High-resolution structural insights into targeting the MYC oncogene G-quadruplex with the quinoline derivative PEQ
Dickerhoff, Jonathan⋅Dai, Jixun and Yang, Danzhou
Cancer research (Chicago, Ill.), vol. 83, (no. 7_Supplement), pp. 3840, 2023-04-04. | Journal Article
 
Abstract 3842: Berberine recognition of the dGMP-bound PDGFR-β promoter G-quadruplex: Structural insight into specific drug targeting
Wang, Kai-Bo⋅Dickerhoff, Jonathan⋅Han, Yichen and Yang, Danzhou
Cancer research (Chicago, Ill.), vol. 83, (no. 7_Supplement), pp. 3842, 2023-04-04. | Journal Article
 
Abstract 3948: DDX5 helicase resolves G-quadruplex and transactivates MYC expression
Wu, Guanhui⋅Wu, Guanhui⋅Xing, Zheng⋅Xing, Zheng⋅Chen, Luying⋅Chen, Luying⋅Tran, Elizabeth J.⋅Tran, Elizabeth J.⋅Yang, Danzhou and Yang, Danzhou
Cancer research (Chicago, Ill.), vol. 83, (no. 7_Supplement), pp. 3948, 2023-04-04. | Journal Article
 
Abstract 5005: Targeted down regulation of FGFR1 through G-quadruplex stabilization in metastatic breast cancer
Safdar, Muhammad Hassan⋅Safdar, Muhammad Hassan⋅Lin, Hang⋅Lin, Hang⋅Dagher, Sarah⋅Dagher, Sarah⋅Dickerhoff, Jonathan⋅Dickerhoff, Jonathan⋅Yang, Danzhou⋅Yang, Danzhou⋅Wendt, Michael K. and Wendt, Michael K.
Cancer research (Chicago, Ill.), vol. 83, (no. 7_Supplement), pp. 5005, 2023-04-04. | Journal Article
 
Gas-Phase Fragmentation as a Probe of G-Quadruplex Formation.
Brundridge, Nicole M⋅Dickerhoff, Jonathan⋅Yang, Danzhou and McLuckey, Scott A
Analytical chemistry, September 29, 2023. | Journal Article
2022
Decoding regulatory associations of G-quadruplex with epigenetic and transcriptomic functional components
Fang, Shuyi⋅Liu, Sheng⋅Yang, Danzhou⋅Yang, Lei⋅Hu, Chang-Deng and Wan, Jun
Frontiers in genetics, vol. 13, pp. 957023, 2022-08-25. | Journal Article
 
DNA G‑Quadruplex in Human Telomeres and Oncogene Promoters: Structures, Functions, and Small Molecule Targeting
Chen, Luying⋅Dickerhoff, Jonathan⋅Sakai, Saburo and Yang, Danzhou
Accounts of chemical research, vol. 55, (no. 18), pp. 2646, 2022-09-20. | Journal Article
 
Editorial: NAR Cancer and epigenetics and cancer.
Yang, Danzhou⋅Dickerhoff, Jonathan and Dynan, William S
NAR cancer, vol. 4, (no. 1), pp. zcac003, March 2022. | Journal Article
 
Oxidative Damage Induces a Vacancy G-Quadruplex That Binds Guanine Metabolites: Solution Structure of a cGMP Fill-in Vacancy G-Quadruplex in the Oxidized BLM Gene Promoter.
Wang, Kai-Bo⋅Liu, Yushuang⋅Li, Yipu⋅Dickerhoff, Jonathan⋅Li, Jinzhu⋅Yang, Ming-Hua⋅Yang, Danzhou and Kong, Ling-Yi
Journal of the American Chemical Society, March 30, 2022. | Journal Article
 
RNA helicase DDX5 enables STAT1 mRNA translation and interferon signalling in hepatitis B virus replicating hepatocytes
Sun, Jiazeng⋅Sun, Jiazeng⋅Wu, Guanhui⋅Wu, Guanhui⋅Pastor, Florentin⋅Pastor, Florentin⋅Rahman, Naimur⋅Rahman, Naimur⋅Wen-Hung, Wang⋅Wang, Wen-Hung⋅Zhang, Zhengtao⋅Zhang, Zhengtao⋅MERLE, Philippe⋅MERLE, Philippe⋅Hui, Lijian⋅Hui, Lijian⋅Salvetti, Anna⋅Salvetti, Anna⋅Durantel, David⋅Durantel, David⋅Yang, Danzhou⋅Yang, Danzhou⋅Andrisani, Ourania and Andrisani, Ourania
Gut, vol. 71, (no. 5), pp. 991-1005, May 2022. | Journal Article
 
Subnanomolar Sensitive Stable Isotopic Determination in CO2 by Tunable Infrared Laser Absorption Spectroscopy
Sakai, Saburo⋅Otsuka, Taiga⋅Matsuda, Shinichi⋅Sakairi, Yoshiyuki⋅Uchida, Ryoma⋅Sugahara, Kazunori⋅Kano, Akihiro and Yang, Danzhou
Analytical chemistry (Washington), vol. 94, (no. 17), pp. 6450, 20220503. | Journal Article
2021
Berberine Molecular Recognition of the Parallel MYC G-Quadruplex in Solution.
Dickerhoff, Jonathan⋅Dickerhoff, Jonathan⋅Brundridge, Nicole⋅Brundridge, Nicole⋅McLuckey, Scott A⋅Mc Luckey, Scott A⋅Yang, Danzhou and Yang, Danzhou
Journal of medicinal chemistry, October 22, 2021. | Journal Article
 
Evaluating Molecular Docking Software for Small Molecule Binding to G-Quadruplex DNA
Dickerhoff, Jonathan⋅Warnecke, Kassandra R⋅Wang, Kaibo⋅Wang, Kaibo⋅Deng, Nanjie⋅Deng, Nanjie⋅Yang, Danzhou and Yang, Danzhou
International Journal of Molecular Sciences, vol. 22, (no. 19), 2021. | Journal Article
 
Novel DNA Bis-Intercalator XR5944 as a Potent Anticancer Drug-Design and Mechanism of Action.
Buric, Adam J⋅Dickerhoff, Jonathan and Yang, Danzhou
Molecules (Basel, Switzerland), vol. 26, (no. 14), July 7, 2021. | Journal Article
 
RNA helicase DDX5 enables STAT1 mRNA translation and interferon signalling in hepatitis B virus replicating hepatocytes.
Sun, Jiazeng⋅Wu, Guanhui⋅Pastor, Florentin⋅Rahman, Naimur⋅Wang, Wen-Hung⋅Zhang, Zhengtao⋅Merle, Philippe⋅Hui, Lijian⋅Salvetti, Anna⋅Durantel, David⋅Yang, Danzhou and Andrisani, Ourania
Gut, May 21, 2021. | Journal Article
 
Solution Structure of Ternary Complex of Berberine Bound to a dGMP–Fill-In Vacancy G‑Quadruplex Formed in the PDGFR‑β Promoter
Wang, Kai-Bo⋅Dickerhoff, Jonathan and Yang, Danzhou
Journal of the American Chemical Society, vol. 143, (no. 40), pp. 16555, 2021-10-13. | Journal Article
 
Structural recognition of the MYC promoter G-quadruplex by a quinoline derivative: insights into molecular targeting of parallel G-quadruplexes.
Dickerhoff, Jonathan⋅Dai, Jixun and Yang, Danzhou
Nucleic acids research, May 12, 2021. | Journal Article
2020
Combining Alchemical Transformation with a Physical Pathway to Accelerate Absolute Binding Free Energy Calculations of Charged Ligands to Enclosed Binding Sites
Cruz, Jeffrey⋅Cruz, Jeffrey⋅Wickstrom, Lauren⋅Wickstrom, Lauren⋅Yang, Danzhou⋅Yang, Danzhou⋅Gallicchio, Emilio⋅Gallicchio, Emilio⋅Deng, Nanjie and Deng, Nanjie
Journal of chemical theory and computation, vol. 16, (no. 4), pp. 2813, 2020-Apr-14. | Journal Article
 
Custom DNA Microarrays Reveal Diverse Binding Preferences of Proteins and Small Molecules to Thousands of G-Quadruplexes
Ray, Sreejana⋅Tillo, Desiree⋅Boer, Robert E⋅Assad, Nima⋅Barshai, Mira⋅Wu, Guanhui⋅Orenstein, Yaron⋅Yang, Danzhou⋅Schneekloth, Jr, John S and Vinson, Charles
ACS chemical biology, vol. 15, (no. 4), pp. 935, 2020-04-17. | Journal Article
 
Custom G4 Microarrays Reveal Selective G-Quadruplex Recognition of Small Molecule BMVC: A Large-Scale Assessment of Ligand Binding Selectivity.
Wu, Guanhui⋅Tillo, Desiree⋅Ray, Sreejana⋅Chang, Ta-Chau⋅Schneekloth, John S⋅Vinson, Charles and Yang, Danzhou
Molecules (Basel, Switzerland), vol. 25, (no. 15), July 30, 2020. | Journal Article
 
PDGFR-β Promoter Forms a Vacancy G-Quadruplex that Can Be Filled in by dGMP: Solution Structure and Molecular Recognition of Guanine Metabolites and Drugs
Wang, Kai-Bo⋅Wang, Kai-Bo⋅Dickerhoff, Jonathan⋅Dickerhoff, Jonathan⋅Wu, Guanhui⋅Wu, Guanhui⋅Yang, Danzhou and Yang, Danzhou
Journal of the American Chemical Society, vol. 142, (no. 11), pp. 5211, 2020-Mar-18. | Journal Article
2019
19F NMR Spectroscopy for the Analysis of DNA G-Quadruplex Structures Using 19F-Labeled Nucleobase
Yang, Danzhou and Lin, Clement
G-Quadruplex Nucleic Acids, vol. 2035, pp. 433, 20190101. | Journal Article
 
Abstract 1856: Targeting human telomeres by binding of epiberberine to telomeric G-quadruplex
Lin, Clement⋅Wu, Guanhui⋅Wang, Kaibo⋅Onel, Buket⋅Sakai, Saburo and Yang, Danzhou
Cancer research (Chicago, Ill.), vol. 79, (no. 13_Supplement), pp. 1856, 2019-07-01. | Journal Article