46 Publications (Page 2 of 2)
2013
RNA purification by preparative polyacrylamide gel electrophoresis.
Petrov, Alexey N⋅Petrov, Alexey⋅Wu, Tinghe⋅Wu, Tinghe⋅Puglisi, Elisabetta Viani⋅Puglisi, Elisabetta V⋅Puglisi, Joseph D and Puglisi, Joseph D
Methods in enzymology, vol. 530, pp. 315-330, 2013. | Journal Article
2012
Heterogeneous pathways and timing of factor departure during translation initiation
Tsai, Albert⋅Tsai, Albert⋅Petrov, Alexey⋅Petrov, Alexey N⋅Marshall, R. A⋅Marshall, R Andrew⋅Korlach, Jonas⋅Korlach, Jonas⋅Uemura, Sotaro⋅Uemura, Sotaro⋅Puglisi, Joseph D and Puglisi, Joseph D
Nature, vol. 487, (no. 7407), pp. 393, 2012-Jul-19. | Journal Article
 
Initiation factor 2, tRNA, and 50S subunits cooperatively stabilize mRNAs on the ribosome during initiation
Masuda, Tomoaki⋅Masuda, Tomoaki⋅Petrov, Alexey N⋅Petrov, Alexey⋅Iizuka, Ryo⋅Iizuka, Ryo⋅Funatsu, Takashi⋅Funatsu, Takashi⋅Puglisi, Joseph D⋅Puglisi, Joseph⋅Uemura, Sotaro and Uemura, Sotaro
Proceedings of the National Academy of Sciences of the United States of America, vol. 109, (no. 13), pp. 4885, 20120327. | Journal Article
 
Non-fluorescent Quenchers to Correlate Single-Molecule Conformational and Compositional Dynamics
Chen, Jin⋅Chen, Jin⋅Tsai, Albert⋅Tsai, Albert⋅Petrov, Alexey N⋅Petrov, Alexey⋅Puglisi, Joseph D and Puglisi, Joseph D
Journal of the American Chemical Society, vol. 134, (no. 13), pp. 5737, 2012-03-23. | Journal Article
 
Single-Molecule Analysis of Translational Dynamics
Petrov, Alexey⋅Petrov, Alexey⋅Petrov, Alexey N⋅Chen, Jin⋅Chen, Jin⋅Chen, Jin⋅O'Leary, Seán⋅O'leary, Sean⋅O'Leary, Seán⋅Tsai, Albert⋅Tsai, Albert⋅Tsai, Albert⋅Puglisi, Joseph D⋅Puglisi, Joseph D and Puglisi, Joseph D
Cold Spring Harbor perspectives in biology, vol. 4, (no. 9), pp. a011551, 2012-Sep-01. | Journal Article
 
Unraveling the dynamics of ribosome translocation
Chen, Jin⋅Chen, Jin⋅Chen, Jin⋅Tsai, Albert⋅Tsai, Albert⋅Tsai, Albert⋅O'Leary, Seán E⋅O’Leary, Seán E⋅O'leary, Sean⋅Petrov, Alexey N⋅Petrov, Alexey⋅Petrov, Alexey⋅Puglisi, Joseph D⋅Puglisi, Joseph D and Puglisi, Joseph D
Current Opinion in Structural Biology, vol. 22, (no. 6), pp. 814, December 2012. | Journal Article
2011
Dynamics of the translational machinery
Petrov, Alexey N⋅Petrov, Alexey⋅Kornberg, Guy⋅Kornberg, Guy⋅O'leary, Sean⋅O’Leary, Seán⋅Tsai, Albert⋅Tsai, Albert⋅Uemura, Sotaro⋅Uemura, Sotaro⋅Puglisi, Joseph D and Puglisi, Joseph D
Current Opinion in Structural Biology, vol. 21, (no. 1), pp. 145, 2011. | Journal Article
2010
Single ribosome dynamics and the mechanism of translation.
Aitken, Colin E⋅Aitken, Colin Echeverría⋅Petrov, Alexey N⋅Petrov, Alexey⋅Puglisi, Joseph D and Puglisi, Joseph D
Annual review of biophysics, vol. 39, pp. 491-513, 2010. | Journal Article
 
Single Ribosome Dynamics and the Mechanism of Translation
Aitken, CE⋅Aitken, Colin Echeverría⋅Petrov, Alexey N⋅Petrov, Alexey⋅Puglisi, Joseph D and Puglisi, Joseph D
Annual Review of Biophysics, vol. 39, (no. 1), pp. 513, 20100609. | Journal Article
 
Site-specific labeling of Saccharomyces cerevisiae ribosomes for single-molecule manipulations
Petrov, Alexey N⋅Petrov, Alexey⋅Puglisi, Joseph D and Puglisi, Joseph D
Nucleic acids research, vol. 38, (no. 13), pp. e143, 2010-Jul. | Journal Article
2008
A new kinetic model reveals the synergistic effect of E-, P- and A-sites on +1 ribosomal frameshifting
Liao, Pei-Yu⋅Liao, Pei-Yu⋅Gupta, Prateek⋅Gupta, Prateek⋅Petrov, Alexey N⋅Petrov, Alexey N⋅Dinman, Jonathan D⋅Dinman, Jonathan D⋅Lee, Kelvin H and Lee, Kelvin H
Nucleic Acids Research, vol. 36, (no. 8), pp. 2629, 20080500. | Journal Article
 
Evaluation of Microwave-Accelerated Residue-Specific Acid Cleavage for Proteomic Applications
Swatkoski, Stephen⋅Swatkoski, Stephen⋅Gutierrez, Peter⋅Gutierrez, Peter⋅Wynne, Colin⋅Wynne, Colin⋅Petrov, Alexey⋅Petrov, Alexey⋅Dinman, Jonathan D⋅Dinman, Jonathan D⋅Edwards, Nathan⋅Edwards, Nathan⋅Fenselau, Catherine C and Fenselau, Catherine
The Journal of Proteome Research, vol. 7, (no. 2), pp. 586, 20080201. | Journal Article
 
Yeast ribosomal protein L10 helps coordinate tRNA movement through the large subunit
Petrov, Alexey N⋅Petrov, Alexey N⋅Meskauskas, Arturas⋅Meskauskas, Arturas⋅Roshwalb, Sara C⋅Roshwalb, Sara C⋅Dinman, Jonathan D and Dinman, Jonathan D
Nucleic Acids Research, vol. 36, (no. 19), pp. 6198, 20081100. | Journal Article
2007
Integration of Residue-Specific Acid Cleavage into Proteomic Workflows
Swatkoski, Steven⋅Swatkoski, Steven⋅Gutierrez, Peter⋅Gutierrez, Peter⋅Ginter, Joy⋅Ginter, Joy⋅Petrov, Alexey⋅Petrov, Alexey⋅Dinman, Jonathan D⋅Dinman, Jonathan D⋅Edwards, Nathan⋅Edwards, Nathan⋅Fenselau, Catherine C and Fenselau, Catherine
Journal of Proteome Research, vol. 6, (no. 11), pp. 4527, 20071102. | Journal Article
 
Optimization of Ribosome Structure and Function by rRNA Base Modification
Baxter-Roshek, Jennifer L⋅Baxter-Roshek, Jennifer L⋅Petrov, Alexey N⋅Petrov, Alexey N⋅Dinman, Jonathan D and Dinman, Jonathan D
PloS one, vol. 2, (no. 1), pp. e174, 2007-Jan-24. | Journal Article
2005
Identification of Functionally Important Amino Acids of Ribosomal Protein L3 by Saturation Mutagenesis
Meskauskas, Arturas⋅Meskauskas, Arturas⋅Petrov, Alexey N⋅Petrov, Alexey⋅Dinman, Jonathan D and Dinman, Jonathan
Molecular and Cellular Biology, vol. 25, (no. 24), pp. 10874, 20051215. | Journal Article
 
Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae
Kiparisov, Sergey⋅Kiparisov, Sergey⋅Petrov, Alexey⋅Petrov, Alexey⋅Meskauskas, Arturas⋅Meskauskas, Arturas⋅Sergiev, Petr V⋅Sergiev, Petr⋅Dontsova, Olga A⋅Dontsova, Olga⋅Dinman, Jonathan D and Dinman, Jonathan
Molecular Genetics and Genomics, vol. 274, (no. 3), pp. 247, 20051000. | Journal Article
2004
Ribosomal Protein L3: Influence on Ribosome Structure and Function
Petrov, Alexey⋅Petrov, Alexey⋅Meskauskas, Arturas⋅Meskauskas, Arturas⋅Dinman, Jonathan D and Dinman, Jonathan D
RNA Biology, vol. 1, (no. 1), pp. 64, 5/1/2004. | Journal Article
2003
The 9-A solution: How mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting
Plant, Ewan P⋅Plant, Ewan P⋅Jacobs, Kristi L⋅Jacobs, Kristi L Muldoon⋅Harger, Jason W⋅Harger, Jason W⋅Meskauskas, Arturas⋅Meskauskas, Arturas⋅Jacobs, Jonathan L⋅Jacobs, Jonathan L⋅Baxter, Jennifer L⋅Baxter, Jennifer L⋅Petrov, Alexey N⋅Petrov, Alexey N⋅Dinman, Jonathan D and Dinman, Jonathan D
RNA (New York, N.Y.), vol. 9, (no. 2), pp. 174, 2003-Feb. | Journal Article
2002
Regulation of Elongation Factor-2 Kinase by pH
Dorovkov, MV⋅Dorovkov, Maxim V⋅Pavur, Karen S⋅Pavur, KS⋅Petrov, AN⋅Petrov, Alexey N⋅Ryazanov, Alexey G and Ryazanov, Alexey G
Biochemistry, vol. 41, (no. 45), pp. 13450, 20021112. | Journal Article
2000
Mapping the Functional Domains of Elongation Factor-2 Kinase
Pavur, K S⋅Pavur, Karen S⋅Petrov, A N⋅Petrov, Alexey N⋅Ryazanov, Alexey G and Ryazanov, Alexey G
Biochemistry, vol. 39, (no. 40), pp. 12224, 20001010. | Journal Article