27 Publications (Page 1 of 2)
2021
A long noncoding RNA antisense to ICAM-1 is involved in allergic asthma associated hyperreactive response of airway epithelial cells
Devadoss, Dinesh⋅Daly, Grant⋅Daly, Grant⋅Manevski, Marko⋅Houserova, Dominika⋅Hussain, Shah S⋅Hussain, Shah S⋅Baumlin, Nathalie⋅Salathe, Matthias⋅Borchert, Glen M⋅Borchert, Glen M⋅Langley, Raymond J⋅Langley, Raymond J⋅Chand, Hitendra S and Chand, Hitendra S
Mucosal Immunology, vol. 14, (no. 3), pp. 630-639, May 2021. | Journal Article
2020
A partial encryption algorithm for medical images based on quick response code and reversible data hiding technology
Li, Jian⋅Li, Jian⋅Li, Jian⋅Li, Jian⋅Zhang, Zelin⋅Zhang, Zelin⋅Zhang, Zelin⋅Zhang, Zelin⋅Li, Shengyu⋅Li, Shengyu⋅Li, Shengyu⋅Li, Shengyu⋅Benton, Ryan⋅Benton, Ryan⋅Benton, Ryan⋅Benton, Ryan⋅Huang, Yulong⋅Huang, Yulong⋅Huang, Yulong⋅Huang, Yulong⋅Kasukurthi, Mohan Vamsi⋅Kasukurthi, Mohan Vamsi⋅Mohan, Vamsi K⋅Kasukurthi, Mohan Vamsi⋅Li, Dongqi⋅Li, Dongqi⋅Li, Dongqi⋅Li, Dongqi⋅Lin, Jingwei⋅Lin, Jingwei⋅Lin, Jingwei⋅Lin, Jingwei⋅Borchert, Glen M⋅Borchert, Glen M⋅Borchert, Glen M⋅Borchert, Glen M⋅Tan, Shaobo⋅Tan, Shaobo⋅Tan, Shaobo⋅Tan, Shaobo⋅Li, Gang⋅Li, Gang⋅Li, Gang⋅Li, Gang⋅Ma, Bin⋅Ma, Bin⋅Ma, Bin⋅Ma, Bin⋅Yang, Meihong⋅Yang, Meihong⋅Yang, Meihong⋅Yang, Meihong⋅Huang, Jingshan⋅Huang, Jingshan⋅Huang, Jingshan and Huang, Jingshan
BMC Medical Informatics and Decision Making , vol. 20, pp. 1-16, 2020. | Journal Article
 
Development of a support vector machine learning and smart phone Internet of Things-based architecture for real-time sleep apnea diagnosis
Ma, Bin⋅Ma, Bin⋅Ma, Bin⋅Ma, Bin⋅Wu, Zhaolong⋅Wu, Zhaolong⋅Wu, Zhaolong⋅Wu, Zhaolong⋅Li, Shengyu⋅Li, Shengyu⋅Li, Shengyu⋅Li, Shengyu⋅Benton, Ryan⋅Benton, Ryan⋅Benton, Ryan⋅Benton, Ryan⋅Li, Dongqi⋅Li, Dongqi⋅Li, Dongqi⋅Li, Dongqi⋅Huang, Yulong⋅Huang, Yulong⋅Huang, Yulong⋅Huang, Yulong⋅Kasukurthi, Mohan Vamsi⋅Mohan, Vamsi K⋅Kasukurthi, Mohan Vamsi⋅Kasukurthi, Mohan Vamsi⋅Lin, Jingwei⋅Lin, Jingwei⋅Lin, Jingwei⋅Lin, Jingwei⋅Borchert, Glen M⋅Borchert, Glen M⋅Borchert, Glen M⋅Borchert, Glen M⋅Tan, Shaobo⋅Tan, Shaobo⋅Tan, Shaobo⋅Tan, Shaobo⋅Li, Gang⋅Li, Gang⋅Li, Gang⋅Li, Gang⋅Yang, Meihong⋅Yang, Meihong⋅Yang, Meihong⋅Yang, Meihong⋅Huang, Jingshan⋅Huang, Jingshan⋅Huang, Jingshan and Huang, Jingshan
BMC Medical Informatics and Decision Making , vol. 20, pp. 1-13, 2020. | Journal Article
2019
Long Noncoding Transcriptome in Chronic Obstructive Pulmonary Disease
Devadoss, Dinesh⋅Devadoss, Dinesh⋅Devadoss, Dinesh⋅Long, Christopher⋅Long, Christopher⋅Long, Christopher⋅Langley, Raymond J⋅Langley, Raymond J⋅Langley, Raymond J⋅Manevski, Marko⋅Manevski, Marko⋅Manevski, Marko⋅Nair, Madhavan⋅Nair, Madhavan⋅Nair, Madhavan⋅Campos, Michael A⋅Campos, Michael A⋅Campos, Michael A⋅Borchert, Glen⋅Borchert, Glen⋅Borchert, Glen⋅Rahman, Irfan⋅Rahman, Irfan⋅Rahman, Irfan⋅Chand, Hitendra S⋅Chand, Hitendra S and Chand, Hitendra S
American Journal of Respiratory Cell and Molecular Biology (Online), vol. 61, (no. 6), Dec 2019. | Journal Article
 
Using an artificial neural network to map cancer common data elements to the biomedical research integrated domain group model in a semi-automated manner
Renner, Robinette⋅Renner, Robinette⋅Renner, Robinette⋅Li, Shengyu⋅Li, Shengyu⋅Li, Shengyu⋅Huang, Yulong⋅Huang, Yulong⋅Huang, Yulong⋅Tan, Shaobo⋅Tan, Shaobo⋅Tan, Shaobo⋅Li, Dongqi⋅Li, Dongqi⋅Li, Dongqi⋅Mohan, Vamsi K⋅Mohan, Vamsi K⋅Mohan, Vamsi K⋅Benton, Ryan⋅Benton, Ryan⋅Benton, Ryan⋅Borchert, Glen M⋅Borchert, Glen M⋅Borchert, Glen M⋅Huang, Jingshan⋅Huang, Jingshan⋅Huang, Jingshan⋅Jiang, Guoqian⋅Jiang, Guoqian and Jiang, Guoqian
BMC Medical Informatics and Decision Making , vol. 19(Suppl 7), pp. 1-13, 2019. | Journal Article
2018
ADAR Mediated RNA Editing Modulates MicroRNA Targeting in Human Breast Cancer
Roberts, Justin⋅Patterson, Dillon⋅King, Valeria⋅Amin, Shivam⋅Polska, Caroline⋅Houserova, Dominika⋅Crucello, Aline⋅Barnhill, Emmaline⋅Miller, Molly⋅Sherman, Timothy and Borchert, Glen
Processes, vol. 6, (no. 5), 2018. | Journal Article
 
ADAR Mediated RNA Editing Modulates MicroRNA Targeting in Human Breast Cancer.
Roberts, Justin T⋅Patterson, Dillon G⋅King, Valeria M⋅Amin, Shivam V⋅Polska, Caroline J⋅Houserova, Dominika⋅Crucello, Aline⋅Barnhill, Emmaline C⋅Miller, Molly M⋅Sherman, Timothy D and Borchert, Glen M
Processes (Basel, Switzerland), vol. 6, (no. 5), May 2018. | Journal Article
 
A semantics-oriented computational approach to investigate microRNA regulation on glucocorticoid resistance in pediatric acute lymphoblastic leukemia.
Chen, Huiqin⋅Zhang, Dihua⋅Zhang, Guoping⋅Li, Xiaofeng⋅Liang, Ying⋅Kasukurthi, Mohan Vamsi⋅Li, Shengyu⋅Borchert, Glen M and Huang, Jingshan
BMC medical informatics and decision making, vol. 18, pp. 57, July 23, 2018. | Journal Article
2017
Computational Prediction of MicroRNA Target Genes, Target Prediction Databases, and Web Resources.
Roberts, Justin T and Borchert, Glen M
Methods in molecular biology (Clifton, N.J.), vol. 1617, pp. 109-122, 2017. | Journal Article
 
Genome-Wide Analysis of MicroRNA-Regulated Transcripts.
Chevalier, David and Borchert, Glen M
Methods in molecular biology (Clifton, N.J.), vol. 1617, pp. 93-107, 2017. | Journal Article
 
MicroRNA Expression: Protein Participants in MicroRNA Regulation.
King, Valeria M and Borchert, Glen M
Methods in molecular biology (Clifton, N.J.), vol. 1617, pp. 27-37, 2017. | Journal Article
 
Viral MicroRNAs, Host MicroRNAs Regulating Viruses, and Bacterial MicroRNA-Like RNAs.
Cardin, Sara-Elizabeth and Borchert, Glen M
Methods in molecular biology (Clifton, N.J.), vol. 1617, pp. 39-56, 2017. | Journal Article
2016
Novel small RNA (sRNA) landscape of the starvation-stress response transcriptome of Salmonella enterica serovar typhimurium.
Amin, Shivam V⋅Roberts, Justin T⋅Patterson, Dillon G⋅Coley, Alexander B⋅Allred, Jonathan A⋅Denner, Jason M⋅Johnson, Justin P⋅Mullen, Genevieve E⋅O'Neal, Trenton K⋅Smith, Jason T⋅Cardin, Sara E⋅Carr, Hank T⋅Carr, Stacie L⋅Cowart, Holly E⋅DaCosta, David H⋅Herring, Brendon R⋅King, Valeria M⋅Polska, Caroline J⋅Ward, Erin E⋅Wise, Alice A⋅McAllister, Kathleen N⋅Chevalier, David⋅Spector, Michael P and Borchert, Glen M
RNA biology, vol. 13, (no. 3), pp. 331-342, 2016. | Journal Article
 
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data
Huang, Jingshan⋅Huang, Jingshan⋅Huang, Jingshan⋅Huang, Jingshan⋅Gutierrez, Fernando⋅Gutierrez, Fernando⋅Gutierrez, Fernando⋅Gutierrez, Fernando⋅Strachan, Harrison⋅Strachan, Harrison J⋅Strachan, Harrison J⋅Strachan, Harrison J⋅Dou, Dejing⋅Dou, Dejing⋅Dou, Dejing⋅Dou, Dejing⋅Huang, Weili⋅Huang, Weili⋅Smith, Weili H⋅Smith, Weili H⋅Blake, Judith⋅Blake, Judith A⋅Smith, Barry⋅Smith, Barry⋅Blake, Judith A⋅Eilbeck, Karen⋅Blake, Judith A⋅Eilbeck, Karen⋅Eilbeck, Karen⋅Blake, Judith A⋅Eilbeck, Karen⋅Natale, Darren⋅Eilbeck, Karen⋅Natale, Darren A⋅Natale, Darren A⋅Natale, Darren A⋅Lin, Yu⋅Lin, Yu⋅Natale, Darren A⋅Lin, Yu⋅Lin, Yu⋅Wu, Bin⋅Wu, Bin⋅Wu, Bin⋅Lin, Yu⋅Wu, Bin⋅Wu, Bin⋅Wang, Xiaowei⋅Silva, Nisansa de⋅Silva, Nisansa de⋅Wang, Xiaowei⋅Wang, Xiaowei⋅Liu, Zixing⋅Liu, Zixing⋅Wang, Xiaowei⋅Wang, Xiaowei⋅Liu, Zixing⋅Borchert, Glen M⋅Borchert, Glen M⋅Liu, Zixing⋅Liu, Zixing⋅Borchert, Glen⋅Borchert, Glen M⋅Tan, Ming⋅Tan, Ming⋅Borchert, Glen M⋅Tan, Ming⋅Tan, Ming⋅Tan, Ming⋅Ruttenberg, Alan and Ruttenberg, Alan
Journal of Biomedical Semantics, vol. 7, 2016. | Journal Article
 
The development of non-coding RNA ontology.
Huang, Jingshan⋅Huang, Jingshan⋅Eilbeck, Karen⋅Eilbeck, Karen⋅Smith, Barry⋅Smith, Barry⋅Blake, Judith A⋅Blake, Judith A⋅Dou, Dejing⋅Dou, Dejing⋅Huang, Weili⋅Huang, Weili⋅Natale, Darren A⋅Natale, Darren A⋅Ruttenberg, Alan⋅Ruttenberg, Alan⋅Huan, Jun⋅Huan, Jun⋅Zimmermann, Michael T⋅Zimmermann, Michael T⋅Jiang, Guoqian⋅Jiang, Guoqian⋅Lin, Yu⋅Lin, Yu⋅Wu, Bin⋅Wu, Bin⋅Strachan, Harrison J⋅Strachan, Harrison J⋅De Silva, N.⋅de Silva, Nisansa⋅De Silva, Nisansa⋅Kasukurthi, Mohan Vamsi⋅Kasukurthi, Mohan Vamsi⋅Jha, Vikash Kumar⋅Jha, Vikash Kumar⋅He, Yongqun⋅He, Yongqun⋅Zhang, Shaojie⋅Zhang, Shaojie⋅Wang, Xiaowei⋅Wang, Xiaowei⋅Liu, Zixing⋅Liu, Zixing⋅Borchert, Glen M⋅Borchert, Glen M⋅Tan, Ming and Tan, Ming
International journal of data mining and bioinformatics, vol. 15, (no. 3), pp. 214-232, 2016. | Journal Article
 
The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.
Huang, Jingshan⋅Huang, Jingshan⋅Huang, Jingshan⋅Huang, Jingshan⋅Eilbeck, Karen⋅Smith, Karen E⋅Smith, Karen E⋅Eilbeck, Karen⋅Blake, Judith A⋅Smith, Barry⋅Smith, Barry⋅Blake, Judith A⋅Dou, Dejing⋅Dou, Dejing⋅Blake, Judith A⋅Blake, Judith A⋅Dou, Dejing⋅Huang, Weili⋅Huang, Weili⋅Dou, Dejing⋅Natale, Darren A⋅Huang, Weili⋅Huang, Weili⋅Natale, Darren A⋅Ruttenberg, Alan⋅Natale, Darren A⋅Ruttenberg, Alan⋅Natale, Darren A⋅Huan, Jun⋅Ruttenberg, Alan⋅Ruttenberg, Alan⋅Huan, Jun⋅Huan, Jun⋅Zimmermann, Michael T⋅Huan, Jun⋅Zimmermann, Michael T⋅Zimmermann, Michael T⋅Jiang, Guoqian⋅Zimmermann, Michael T⋅Jiang, Guoqian⋅Lin, Yu⋅Jiang, Guoqian⋅Jiang, Guoqian⋅Lin, Yu⋅Wu, Bin⋅Wu, Bin⋅Lin, Yu⋅Lin, Yu⋅Wu, Bin⋅Strachan, Harrison J⋅Strachan, Harrison J⋅Wu, Bin⋅He, Yongqun⋅Strachan, Harrison J⋅He, Yongqun⋅Strachan, Harrison J⋅Zhang, Shaojie⋅Zhang, Shaojie⋅He, Yongqun⋅He, Yongqun⋅Zhang, Shaojie⋅Zhang, Shaojie⋅Wang, Xiaowei⋅Wang, Xiaowei⋅Liu, Zixing⋅Liu, Zixing⋅Borchert, Glen M⋅Borchert, Glen M⋅Tan, Ming and Tan, Ming
Journal of biomedical semantics, vol. 7, pp. 24, 2016. | Journal Article
2015
An oxidative DNA "damage" and repair mechanism localized in the VEGF promoter is important for hypoxia-induced VEGF mRNA expression.
Pastukh, Viktor⋅Roberts, Justin T⋅Clark, David W⋅Bardwell, Gina C⋅Patel, Mita⋅Al-Mehdi, Abu-Bakr⋅Borchert, Glen M and Gillespie, Mark N
American journal of physiology. Lung cellular and molecular physiology, vol. 309, (no. 11), pp. L1367-L1375, December 1, 2015. | Journal Article
 
Bone-Remodeling Transcript Levels Are Independent of Perching in End-of-Lay White Leghorn Chickens
Dale, Maurice⋅Mortimer, Erin⋅Kolli, Santharam⋅Achramowicz, Erik⋅Borchert, Glenn⋅Juliano, Steven⋅Halkyard, Scott⋅Sietz, Nick⋅Gatto, Craig⋅Hester, Patricia and Rubin, David
International Journal of Molecular Sciences, vol. 16, (no. 2), pp. 2663-2677, 2015. | Journal Article
2014
Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences.
Roberts, Justin T⋅Cardin, Sara E and Borchert, Glen M
(pp. e29255). 2014
 
OMIT: dynamic, semi-automated ontology development for the microRNA domain.
Huang, Jingshan⋅Huang, Jingshan⋅Dang, Jiangbo⋅Dang, Jiangbo⋅Borchert, Glen⋅Borchert, Glen M⋅Eilbeck, Karen⋅Eilbeck, Karen⋅Zhang, He⋅Zhang, He⋅Xiong, Min⋅Xiong, Min⋅Jiang, Weijian⋅Jiang, Weijian⋅Wu, Hao⋅Wu, Hao⋅Blake, Judith⋅Blake, Judith A⋅Natale, Darren⋅Natale, Darren A⋅Tan, Ming and Tan, Ming
PloS one, vol. 9, (no. 7), pp. e100855, 2014. | Journal Article
2013
Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations.
Roberts, Justin T⋅Cooper, Elvera A⋅Favreau, Connor J⋅Howell, Jacob S⋅Lane, Lee G⋅Mills, James E⋅Newman, Derrick C⋅Perry, Tabitha J⋅Russell, Meaghan E⋅Wallace, Brittany M and Borchert, Glen M
Mobile genetic elements, vol. 3, (no. 6), pp. e27755, November 1, 2013. | Journal Article
 
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.
Li, Yang⋅Shaffer, H Bradley⋅Minx, Patrick⋅Warren, Daniel E⋅Shedlock, Andrew M⋅Thomson, Robert C⋅Valenzuela, Nicole⋅Abramyan, John⋅Amemiya, Chris T⋅Badenhorst, Daleen⋅Biggar, Kyle K⋅Borchert, Glen M⋅Botka, Christopher W⋅Bowden, Rachel M⋅Braun, Edward L⋅Bronikowski, Anne M⋅Bruneau, Benoit G⋅Buck, Leslie T⋅Capel, Blanche⋅Castoe, Todd A⋅Czerwinski, Mike⋅Delehaunty, Kim D⋅Edwards, Scott V⋅Fronick, Catrina C⋅Fujita, Matthew K⋅Fulton, Lucinda⋅Graves, Tina A⋅Green, Richard E⋅Haerty, Wilfried⋅Hariharan, Ramkumar⋅Hernandez, Omar⋅Hillier, La Deana W⋅Holloway, Alisha K⋅Janes, Daniel⋅Janzen, Fredric J⋅Kandoth, Cyriac⋅Kong, Lesheng⋅De Koning, A P Jason⋅Li, Yang⋅Literman, Robert⋅Mc Gaugh, Suzanne E⋅Mork, Lindsey⋅O'Laughlin, Michelle⋅Paitz, Ryan T⋅Pollock, David D⋅Ponting, Chris P⋅Radhakrishnan, Srihari⋅Raney, Brian J⋅Richman, Joy M⋅St John, John⋅Schwartz, Tonia⋅Sethuraman, Arun⋅Spinks, Phillip Q⋅Storey, Kenneth B⋅Thane, Nay⋅Vinar, Tomas⋅Zimmerman, Laura M⋅Warren, Wesley C⋅Mardis, Elaine R and Wilson, Richard K
Genome biology, vol. 14, (no. 3), pp. R28, March 28, 2013. | Journal Article
2012
G-quadruplex recognition activities of E. Coli MutS
Ehrat, Edward A⋅Ehrat, Edward A⋅Johnson, Bradley R⋅Johnson, Bradley R⋅Williams, Jonathan D⋅Williams, Jonathan D⋅Borchert, Glen M⋅Borchert, Glen M⋅Larson, Erik and Larson, Erik D
BMC Molecular Biology , vol. 13, pp. 23, 2012. | Journal Article
2011
Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins.
Borchert, Glen M⋅Holton, Nathaniel W⋅Williams, Jonathan D⋅Hernan, William L⋅Bishop, Ian P⋅Dembosky, Joel A⋅Elste, James E⋅Gregoire, Nathaniel S⋅Kim, Jee-Ah⋅Koehler, Wesley W⋅Lengerich, Joe C⋅Medema, Arianna A⋅Nguyen, Marilyn A⋅Ower, Geoffrey D⋅Rarick, Michelle A⋅Strong, Brooke N⋅Tardi, Nicholas J⋅Tasker, Nathan M⋅Wozniak, Darren J⋅Gatto, Craig and Larson, Erik D
Mobile genetic elements, vol. 1, (no. 1), pp. 8-17, May 2011. | Journal Article
 
Repression of human activation induced cytidine deaminase by miR-93 and miR-155.
Borchert, Glen M⋅Holton, Nathaniel W and Larson, Erik
BMC cancer, vol. 11, pp. 347, 2011. | Journal Article