9 Publications
2017
An adaptive solution to the chemical master equation using tensors
Vo, Huy D⋅Vo, H.D.⋅Sidje, R.B. and Sidje, Roger B
The Journal of Chemical Physics, vol. 147, (no. 4), Jul 28, 2017. | Journal Article
2016
Computational study of p53 regulation via the chemical master equation
Vo, Huy D and Sidje, Roger B
Phys. Biol., vol. 13, pp. 035001. | Journal Article
 
Understanding the finite state projection and related methods for solving the chemical master equation.
Dinh, Khanh N and Sidje, Roger B
Physical biology, vol. 13, (no. 3), pp. 035003, May 13, 2016. | Journal Article
2015
Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
Sidje, R.B. and Vo, H.D.
Mathematical Biosciences, vol. 269, pp. 10--16. | Journal Article
2008
Stochastic chemical kinetics and the total quasi-steady-state assumption: application to the stochastic simulation algorithm and chemical master equation.
Macnamara, Shev⋅Bersani, Alberto M⋅Burrage, Kevin and Sidje, Roger B
The Journal of chemical physics, vol. 129, (no. 9), pp. 095105, 2008/Sep/7. | Journal Article
2007
Analysis of trigonometric implicit Runge-Kutta methods
Nguyen, H. S⋅Sidje, Roger B and Huu Cong, N.
Journal of Computational and Applied Mathematics, vol. 198, (no. 1), pp. 187-207, 2007. | Journal Article
 
Stochastic analysis of the VEGF receptor response curve
MacNamara, Shev⋅Burrage, Kevin and Sidje, Roger B
Computational Models for Life Sciences (CMLS '07) (AIP Conference Proceedings Volume 952), vol. 952, pp. 238-247, 2007. | Journal Article
1999
Numerical study of large sparse matrix exponentials arising in Markov chains
Sidje, Roger B and Stewart, William J
Computational Statistics & Data Analysis, vol. 29, (no. 3), pp. 345-368, 1999. | Journal Article
1998
Expokit: a software package for computing matrix exponentials
Sidje, Roger B
ACM TRANS MATH SOFTWARE, vol. 24, (no. 1), pp. 130-156, 1998. | Journal Article