43 Publications (Page 1 of 2)
2024
Top-down proteomics
Roberts, David S⋅Loo, Joseph A⋅Tsybin, Yury O⋅Liu, Xiaowen⋅Wu, Si⋅Chamot-Rooke, Julia⋅Agar, Jeffrey N⋅Paša-Tolić, Ljiljana⋅Smith, Lloyd M and Ge, Ying
Nature reviews. Methods primers, vol. 4, (no. 1), Jan 2024. | Journal Article
2023
An automated spray-capillary platform for the microsampling and CE-MS analysis of picoliter- and nanoliter-volume samples.
Li, Jiaxue⋅Huang, Lushuang⋅Guo, Yanting⋅Cupp-Sutton, Kellye A and Wu, Si
Analytical and bioanalytical chemistry, August 15, 2023. | Journal Article
 
Elucidating Protein-Ligand Interactions in Cell Lysates Using High-Throughput Hydrogen-Deuterium Exchange Mass Spectrometry with Integrated Protein Thermal Depletion.
Fang, Mulin⋅Wu, Oliver⋅Cupp-Sutton, Kellye A⋅Smith, Kenneth and Wu, Si
Analytical chemistry, January 6, 2023. | Journal Article
 
Multidimensional Separations in Top-Down Proteomics.
Guo, Yanting⋅Cupp-Sutton, Kellye A⋅Zhao, Zhitao⋅Anjum, Samin and Wu, Si
Analytical science advances, vol. 4, (no. 5-6), pp. 181-203, July 2023. | Journal Article
 
Optimization of Higher-Energy Collisional Dissociation Fragmentation Energy for Intact Protein-Level Tandem Mass Tag Labeling.
Guo, Yanting⋅Chowdhury, Trishika⋅Seshadri, Meena⋅Cupp-Sutton, Kellye A⋅Wang, Qingyu⋅Yu, Dahang and Wu, Si
Journal of proteome research, January 5, 2023. | Journal Article
 
The Deuterium Calculator: An Open-Source Tool for Hydrogen-Deuterium Exchange Mass Spectrometry Analysis.
Cupp-Sutton, Kellye A⋅Welborn, Thomas⋅Fang, Mulin⋅Langford, Joel B⋅Wang, Zhe⋅Smith, Kenneth and Wu, Si
Journal of proteome research, January 25, 2023. | Journal Article
 
Toward the analysis of functional proteoforms using mass spectrometry-based stability proteomics
Kang, Ji⋅Seshadri, Meena⋅Cupp-Sutton, Kellye A and Wu, Si
Frontiers in analytical science, vol. 3, Jan 2023. | Journal Article
2022
A benchmarking protocol for intact protein-level Tandem Mass Tag (TMT) labeling for quantitative top-down proteomics.
Guo, Yanting⋅Yu, Dahang⋅Cupp-Sutton, Kellye A⋅Liu, Xiaowen and Wu, Si
MethodsX, vol. 9, pp. 101873, 2022. | Journal Article
2021
High-throughput hydrogen deuterium exchange mass spectrometry (HDX-MS) coupled with subzero-temperature ultrahigh pressure liquid chromatography (UPLC) separation for complex sample analysis.
Fang, Mulin⋅Wang, Zhe⋅Cupp-Sutton, Kellye A⋅Welborn, Thomas⋅Smith, Kenneth and Wu, Si
Analytica chimica acta, vol. 1143, pp. 65-72, January 25, 2021. | Journal Article
 
Quantitative Top-Down Proteomics in Complex Samples Using Protein-Level Tandem Mass Tag Labeling.
Yu, Dahang⋅Wang, Zhe⋅Cupp-Sutton, Kellye A⋅Guo, Yanting⋅Kou, Qiang⋅Smith, Kenneth⋅Liu, Xiaowen and Wu, Si
Journal of the American Society for Mass Spectrometry, March 16, 2021. | Journal Article
 
Spray-Capillary-Based Capillary Electrophoresis Mass Spectrometry for Metabolite Analysis in Single Cells.
Huang, Lushuang⋅Fang, Mulin⋅Cupp-Sutton, Kellye A⋅Wang, Zhe⋅Smith, Kenneth and Wu, Si
Analytical chemistry, March 1, 2021. | Journal Article
2020
Development of an Online 2D Ultrahigh-Pressure Nano-LC System for High-pH and Low-pH Reversed Phase Separation in Top-Down Proteomics.
Wang, Zhe⋅Yu, Dahang⋅Cupp-Sutton, Kellye A⋅Liu, Xiaowen⋅Smith, Kenneth and Wu, Si
Analytical chemistry, vol. 92, (no. 19), pp. 12774-12777, October 6, 2020. | Journal Article
 
High-throughput quantitative top-down proteomics.
Cupp-Sutton, Kellye A and Wu, Si
Molecular omics, vol. 16, (no. 2), pp. 91-99, April 1, 2020. | Journal Article
2019
Deep Intact Proteoform Characterization in Human Cell Lysate Using High-pH and Low-pH Reversed-Phase Liquid Chromatography.
Yu, Dahang⋅Wang, Zhe⋅Cupp-Sutton, Kellye A⋅Liu, Xiaowen and Wu, Si
Journal of the American Society for Mass Spectrometry, vol. 30, (no. 12), pp. 2502-2513, December 1, 2019. | Journal Article
 
Identification and Quantification of Proteoforms by Mass Spectrometry.
Schaffer, Leah V⋅Schaffer, Leah V⋅Schaffer, Leah V⋅Millikin, Robert J⋅Millikin, Robert J⋅Millikin, Robert J⋅Miller, Rachel M⋅Miller, Rachel M⋅Miller, Rachel M⋅Anderson, Lissa C⋅Anderson, Lissa C⋅Anderson, Lissa C⋅Fellers, Ryan T⋅Fellers, Ryan T⋅Fellers, Ryan T⋅Ge, Ying⋅Ge, Ying⋅Ge, Ying⋅Kelleher, Neil L⋅Kelleher, Neil L⋅Kelleher, Neil L⋅LeDuc, Richard D⋅LeDuc, Richard D⋅LeDuc, Richard D⋅Liu, Xiaowen⋅Liu, Xiaowen⋅Liu, Xiaowen⋅Payne, Samuel H⋅Payne, Samuel H⋅Payne, Samuel H⋅Sun, Liangliang⋅Sun, Liangliang⋅Sun, Liangliang⋅Thomas, Paul M⋅Thomas, Paul M⋅Thomas, Paul M⋅Tucholski, Trisha⋅Tucholski, Trisha⋅Tucholski, Trisha⋅Wang, Zhe⋅Wang, Zhe⋅Wang, Zhe⋅Wu, Si⋅Wu, Si⋅Wu, Si⋅Wu, Zhijie⋅Wu, Zhijie⋅Wu, Zhijie⋅Yu, Dahang⋅Yu, Dahang⋅Yu, Dahang⋅Shortreed, Michael R⋅Shortreed, Michael R⋅Shortreed, Michael R⋅Smith, Lloyd M⋅Smith, Lloyd M and Smith, Lloyd M
Proteomics, vol. 19, (no. 10), pp. e1800361, May 2019. | Journal Article
 
Top-down Mass Spectrometry Analysis of Human Serum Autoantibody Antigen-Binding Fragments
Wang, Zhe⋅Wang, Zhe⋅Liu, Xiaowen⋅Liu, Xiaowen⋅Muther, Jennifer⋅Muther, Jennifer⋅James, Judith A⋅James, Judith A⋅Smith, Kenneth⋅Smith, Kenneth⋅Wu, Si and Wu, Si
Scientific Reports (Nature Publisher Group), vol. 9, (no. 1), Dec 2019. | Journal Article
2018
Evaluation of top-down mass spectral identification with homologous protein sequences.
Li, Ziwei⋅Li, Ziwei⋅Li, Ziwei⋅He, Bo⋅He, Bo⋅He, Bo⋅Kou, Qiang⋅Kou, Qiang⋅Kou, Qiang⋅Wang, Zhe⋅Wang, Zhe⋅Wang, Zhe⋅Wu, Si⋅Wu, Si⋅Wu, Si⋅Liu, Yunlong⋅Liu, Yunlong⋅Liu, Yunlong⋅Feng, Weixing⋅Feng, Weixing⋅Feng, Weixing⋅Liu, Xiaowen⋅Liu, Xiaowen and Liu, Xiaowen
BMC bioinformatics, vol. 19, pp. 494, December 28, 2018. | Journal Article
 
Two-Dimensional Separation Using High-pH and Low-pH Reversed Phase Liquid Chromatography for Top-down Proteomics.
Wang, Zhe⋅Ma, Hongyan⋅Smith, Kenneth and Wu, Si
International journal of mass spectrometry, vol. 427, pp. 43-51, April 2018. | Journal Article
2017
Finding Biomass Degrading Enzymes Through an Activity-Correlated Quantitative Proteomics Platform (ACPP)
Ma, Hongyan⋅Delafield, Daniel G⋅Wang, Zhe⋅You, Jianlan and Wu, Si
Journal of the American Society for Mass Spectrometry, vol. 28, (no. 4), pp. 655-663, 2017. | Journal Article
 
Finding Biomass Degrading Enzymes Through an Activity-Correlated Quantitative Proteomics Platform (ACPP)
Ma, Hongyan⋅Delafield, Daniel G⋅Wang, Zhe⋅You, Jianlan and Wu, Si
Journal of the American Society for Mass Spectrometry, vol. 28, (no. 4), pp. 655-663, Apr 2017. | Journal Article
2016
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi
Zeiner, Carolyn A⋅Zeiner, Carolyn A.⋅Zeiner, Carolyn A⋅Zeiner, Carolyn A⋅Purvine, Samuel O.⋅Purvine, Samuel O⋅Purvine, Samuel O⋅Purvine, Samuel O⋅Zink, Erika M⋅Zink, Erika M⋅Zink, Erika M⋅Zink, Erika M.⋅Paša-Tolić, Ljiljana⋅Paša-Tolić, Ljiljana⋅Paša-Tolić, Ljiljana⋅Paša-Tolić, Ljiljana⋅Chaput, Dominique L⋅Chaput, Dominique L⋅Chaput, Dominique L.⋅L Chaput, Dominique⋅Haridas, Sajeet⋅Haridas, Sajeet⋅Haridas, Sajeet⋅Haridas, Sajeet⋅Wu, Si⋅Wu, Si⋅Wu, Si⋅Wu, Si⋅LaButti, Kurt⋅LaButti, Kurt⋅LaButti, Kurt⋅Labutti, Kurt⋅Grigoriev, Igor V⋅Grigoriev, Igor V⋅Grigoriev, Igor V.⋅V Grigoriev, Igor⋅Henrissat, Bernard⋅Henrissat, Bernard⋅Henrissat, Bernard⋅Henrissat, Bernard⋅Santelli, Cara M⋅M Santelli, Cara⋅Santelli, Cara M.⋅Santelli, Cara M⋅Hansel, Colleen M.⋅Hansel, Colleen M⋅Hansel, Colleen M and Hansel, Colleen M
PLoS One, vol. 11, (no. 7), Jul 2016. | Journal Article
 
Nanosomes carrying doxorubicin exhibit potent anticancer activity against human lung cancer cells
Srivastava, Akhil⋅Srivastava, Akhil⋅Amreddy, Narsireddy⋅Amreddy, Narsireddy⋅Babu, Anish⋅Babu, Anish⋅Panneerselvam, Janani⋅Panneerselvam, Janani⋅Mehta, Meghna⋅Mehta, Meghna⋅Muralidharan, Ranganayaki⋅Muralidharan, Ranganayaki⋅Chen, Allshine⋅Chen, Allshine⋅Zhao, Yan D⋅Zhao, Yan Daniel⋅Razaq, Mohammad⋅Razaq, Mohammad⋅Riedinger, Natascha⋅Riedinger, Natascha⋅Kim, Hogyoung⋅Kim, Hogyoung⋅Liu, Shaorong⋅Liu, Shaorong⋅Wu, Si⋅Wu, Si⋅Abdel-Mageed, Asim B⋅Abdel-mageed, Asim B⋅Munshi, Anupama⋅Munshi, Anupama⋅Ramesh, Rajagopal and Ramesh, Rajagopal
Scientific Reports (Nature Publisher Group), vol. 6, pp. 38541, Dec 2016. | Journal Article
 
Top-down analysis of protein samples by de novo sequencing techniques.
Vyatkina, Kira⋅Vyatkina, Kira⋅Wu, Si⋅Wu, Si⋅Dekker, Lennard J M⋅Dekker, Lennard J M⋅VanDuijn, Martijn M⋅VanDuijn, Martijn M⋅Liu, Xiaowen⋅Liu, Xiaowen⋅Tolić, Nikola⋅Tolić, Nikola⋅Luider, Theo M⋅Luider, Theo M⋅Paša-Tolić, Ljiljana⋅Paša-Tolić, Ljiljana⋅Pevzner, Pavel A and Pevzner, Pavel A
Bioinformatics (Oxford, England), vol. 32, (no. 18), pp. 2753-2759, September 15, 2016. | Journal Article
2015
Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants
Aylward, Frank O⋅Aylward, Frank O⋅Aylward, Frank O⋅Khadempour, Lily⋅Khadempour, Lily⋅Khadempour, Lily⋅Tremmel, Daniel M⋅Tremmel, Daniel M⋅Tremmel, Daniel M⋅McDonald, Bradon R⋅McDonald, Bradon R⋅McDonald, Bradon R⋅Nicora, Carrie D⋅Nicora, Carrie D⋅Nicora, Carrie D⋅Wu, Si⋅Wu, Si⋅Wu, Si⋅Moore, Ronald J⋅Moore, Ronald J⋅Moore, Ronald J⋅Orton, Daniel J⋅Orton, Daniel J⋅Orton, Daniel J⋅Monroe, Matthew E⋅Monroe, Matthew E⋅Monroe, Matthew E⋅Piehowski, Paul D⋅Piehowski, Paul D⋅Piehowski, Paul D⋅Purvine, Samuel O⋅Purvine, Samuel O⋅Purvine, Samuel O⋅Smith, Richard D⋅Smith, Richard D⋅Smith, Richard D⋅Lipton, Mary S⋅Lipton, Mary S⋅Lipton, Mary S⋅Burnum-Johnson, Kristin E⋅Burnum-Johnson, Kristin E⋅Burnum-Johnson, Kristin E⋅Currie, Cameron R⋅Currie, Cameron R and Currie, Cameron R
PLoS One, vol. 10, (no. 8), Aug 2015. | Journal Article
2014
A new scoring function for top-down spectral deconvolution
Kou, Qiang⋅Kou, Qiang⋅Wu, Si⋅Wu, Si⋅Liu, Xiaowen and Liu, Xiaowen
BMC Genomics, vol. 15, 2014. | Journal Article