47 Publications (Page 1 of 2)
2024
Rapid mini-chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia.
Liu, Sanzhen⋅Lin, Guifang⋅Ramachandran, Sowmya R⋅Daza, Lidia Calderon⋅Cruppe, Giovana⋅Tembo, Batiseba⋅Singh, Pawan Kumar⋅Cook, David⋅Pedley, Kerry F and Valent, Barbara
The New phytologist, vol. 241, (no. 3), pp. 1266-1276, February 2024. | Journal Article
 
Trait association and prediction through integrative k-mer analysis
He, C.⋅Washburn, J.D.⋅He, Cheng⋅Schleif, N.⋅Washburn, Jacob D⋅Hao, Y.⋅Schleif, Nathaniel⋅Kaeppler, H.⋅Hao, Yangfan⋅Kaeppler, Heidi⋅Zhang, Z.⋅Kaeppler, Shawn M⋅Yang, J.⋅Zhang, Zhiwu⋅Liu, S.⋅Yang, Jinliang and Liu, Sanzhen
The Plant journal : for cell and molecular biology, Sep 11, 2024. | Journal Article
 
Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseases
Gyawali, Nikesh⋅Hao, Yangfan⋅Lin, Guifang⋅Huang, Jun⋅Bika, Ravi⋅Daza, Lidia Calderon⋅Zheng, Huakun⋅Cruppe, Giovana⋅Caragea, Doina⋅Cook, David⋅Valent, Barbara and Liu, Sanzhen
NAR genomics and bioinformatics, vol. 6, (no. 3), pp. lqae108, Sep 2024. | Journal Article
2023
2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project.
Lima, Dayane Cristina⋅Lima, DC⋅Aviles, AC⋅Aviles, Alejandro Castro⋅Alpers, RT⋅Alpers, Ryan Timothy⋅McFarland, Bridget A⋅McFarland, BA⋅Kaeppler, Shawn⋅Kaeppler, S⋅Ertl, D⋅Ertl, David⋅Romay, Maria Cinta⋅Romay, MC⋅Gage, Joseph L⋅Gage, JL⋅Holland, James⋅Holland, J⋅Beissinger, T⋅Beissinger, Timothy⋅Bohn, M⋅Bohn, Martin⋅Buckler, E⋅Buckler, Edward⋅Edwards, J⋅Edwards, Jode⋅Flint-Garcia, Sherry⋅Flint-Garcia, S⋅Hirsch, CN⋅Hirsch, Candice N⋅Hood, Elizabeth⋅Hood, E⋅Hooker, David C⋅Hooker, DC⋅Knoll, Joseph E⋅Knoll, JE⋅Kolkman, JM⋅Kolkman, Judith M⋅Liu, S⋅Liu, Sanzhen⋅McKay, John⋅McKay, J⋅Minyo, R⋅Minyo, Richard⋅Moreta, Danilo E⋅Moreta, DE⋅Murray, SC⋅Murray, Seth C⋅Nelson, R⋅Nelson, Rebecca⋅Schnable, JC⋅Schnable, James C⋅Sekhon, RS⋅Sekhon, Rajandeep S⋅Singh, MP⋅Singh, Maninder P⋅Thomison, P⋅Thomison, Peter⋅Thompson, Addie⋅Thompson, A⋅Tuinstra, Mitchell⋅Tuinstra, M⋅Wallace, J⋅Wallace, Jason⋅Washburn, Jacob D⋅Washburn, JD⋅Weldekidan, Teclemariam⋅Weldekidan, T⋅Wisser, Randall J⋅Wisser, RJ⋅Xu, W⋅Xu, Wenwei⋅de Leon, Natalia and Leon, N
BMC genomic data, vol. 24, (no. 1), pp. 29, May 25, 2023. | Journal Article
 
Heritable epigenetic modification of BpPIN1 is associated with leaf shapes in Betula pendula.
Gu, Chenrui⋅Han, Rui⋅Liu, Chaoyi⋅Fang, Gonggui⋅Yuan, Qihang⋅Zheng, Zhimin⋅Yu, Qibin⋅Jiang, Jing⋅Liu, Sanzhen⋅Xie, Linan⋅Wei, Hairong⋅Zhang, Qingzhu and Liu, Guifeng
Tree physiology, vol. 43, (no. 10), pp. 1811-1824, October 8, 2023. | Journal Article
 
Regulation of regeneration in Arabidopsis thaliana.
Islam, Md Khairul⋅Mummadi, Sai Teja⋅Liu, Sanzhen and Wei, Hairong
aBIOTECH, vol. 4, (no. 4), pp. 332-351, December 2023. | Journal Article
 
TGPred: efficient methods for predicting target genes of a transcription factor by integrating statistics, machine learning and optimization
Cao, Xuewei⋅Cao, Xuewei⋅Zhang, Ling⋅Zhang, Ling⋅Islam, Md Khairul⋅Islam, Md Khairul⋅Zhao, Mingxia⋅Zhao, Mingxia⋅He, Cheng⋅He, Cheng⋅Zhang, Kui⋅Zhang, Kui⋅Liu, Sanzhen⋅Liu, Sanzhen⋅Sha, Qiuying⋅Sha, Qiuying⋅Wei, Hairong and Wei, Hairong
NAR genomics and bioinformatics, vol. 5, (no. 3), pp. lqad083, Sep 2023. | Journal Article
2022
A conserved hypothetical gene is required but not sufficient for Ptr ToxC production in Pyrenophora tritici-repentis.
Shi, Gongjun State⋅Kariyawasam, Gayan⋅Liu, Sanzhen⋅Leng, Yueqiang⋅Zhong, Shaobin⋅Ali, Shaukat⋅Moolhuijzen, Paula⋅Moffat, Caroline⋅Rasmussen, Jack B⋅Friesen, Timothy L⋅Faris, Justin D and Liu, Zhaohui
Molecular plant-microbe interactions : MPMI, January 31, 2022. | Journal Article
2021
A genome-wide genetic linkage map and reference quality genome sequence for a new race in the wheat pathogen Pyrenophora tritici-repentis.
Kariyawasam, Gayan K⋅Wyatt, Nathan⋅Shi, Gongjun⋅Liu, Sanzhen⋅Yan, Changhui⋅Ma, Yongchao⋅Zhong, Shaobin⋅Rasmussen, Jack B⋅Moolhuijzen, Paula⋅Moffat, Caroline S⋅Friesen, Timothy L and Liu, Zhaohui
Fungal genetics and biology : FG & B, pp. 103571, May 17, 2021. | Journal Article
 
Ectopic Expression of a Heterologous Glutaredoxin Enhances Drought Tolerance and Grain Yield in Field Grown Maize
Tamang, Tej M⋅Tamang, Tej M⋅Sprague, Stuart A⋅Sprague, Stuart A⋅Kakeshpour, Tayebeh⋅Kakeshpour, Tayebeh⋅Liu, Sanzhen⋅Liu, Sanzhen⋅White, Frank F⋅White, Frank F⋅Park, Sunghun and Park, Sunghun
International Journal of Molecular Sciences, vol. 22, (no. 10), 2021. | Journal Article
 
HB-PLS: A statistical method for identifying biological process or pathway regulators by integrating Huber loss and Berhu penalty with partial least squares regression
Deng, Wenping⋅Deng, Wenping⋅Zhang, Kui⋅Zhang, Kui⋅He, Cheng⋅He, Cheng⋅Liu, Sanzhen⋅Liu, Sanzhen⋅Wei, Hairong and Wei, Hairong
Forestry research, vol. 1, pp. 6, Jan 2021. | Journal Article
 
Identification of biological pathway and process regulators using sparse partial least squares and triple-gene mutual interaction.
Hong, Junyan⋅Gunasekara, Chathura⋅He, Cheng⋅Liu, Sanzhen⋅Huang, Jianqin and Wei, Hairong
Scientific reports, vol. 11, (no. 1), pp. 13174, June 23, 2021. | Journal Article
 
Multi-Omics Analyses Reveal Systemic Insights into Maize Vivipary.
Wang, Yiru⋅Zhang, Junli⋅Sun, Minghao⋅He, Cheng⋅Yu, Ke⋅Zhao, Bing⋅Li, Rui⋅Li, Jian⋅Yang, Zongying⋅Wang, Xiao⋅Duan, Haiyang⋅Fu, Junjie⋅Liu, Sanzhen⋅Zhang, Xuebin and Zheng, Jun
Plants (Basel, Switzerland), vol. 10, (no. 11), November 12, 2021. | Journal Article
 
Multiple origins of Indian dwarf wheat by mutations targeting the TREE domain of a GSK3-like kinase for drought tolerance, phosphate uptake, and grain quality.
Gupta, Ajay⋅Hua, Lei⋅Lin, Guifang⋅Molnár, Istváan⋅Doležel, Jaroslav⋅Liu, Sanzhen and Li, Wanlong
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, vol. 134, (no. 2), pp. 633-645, February 2021. | Journal Article
2020
Characterization, Genetic Analyses, and Identification of QTLs Conferring Metabolic Resistance to a 4-Hydroxyphenylpyruvate Dioxygenase Inhibitor in Sorghum (Sorghum bicolor).
Pandian, Balaji Aravindhan⋅Pandian, Balaji Aravindhan⋅Varanasi, Aruna⋅Varanasi, Aruna⋅Vennapusa, Amaranatha R⋅Vennapusa, Amaranatha R⋅Sathishraj, Rajendran⋅Sathishraj, Rajendran⋅Lin, Guifang⋅Lin, Guifang⋅Zhao, Mingxia⋅Zhao, Mingxia⋅Tunnell, Madison⋅Tunnell, Madison⋅Tesso, Tesfaye⋅Tesso, Tesfaye⋅Liu, Sanzhen⋅Liu, Sanzhen⋅Prasad, P V Vara⋅Prasad, P V Vara⋅Jugulam, Mithila and Jugulam, Mithila
Frontiers in plant science, vol. 11, pp. 596581, 2020. | Journal Article
 
Early Drought-Responsive Genes Are Variable and Relevant to Drought Tolerance.
He, Cheng⋅He, Cheng⋅He, Cheng⋅Du, Yicong⋅Du, Yicong⋅Du, Yicong⋅Fu, Junjie⋅Fu, Junjie⋅Fu, Junjie⋅Zeng, Erliang⋅Zeng, Erliang⋅Zeng, Erliang⋅Park, Sunghun⋅Park, Sunghun⋅Park, Sunghun⋅White, Frank⋅White, Frank⋅White, Frank⋅Zheng, Jun⋅Zheng, Jun⋅Zheng, Jun⋅Liu, Sanzhen⋅Liu, Sanzhen and Liu, Sanzhen
G3 (Bethesda, Md.), vol. 10, (no. 5), pp. 1657-1670, May 4, 2020. | Journal Article
 
Factorial estimating assembly base errors using k-mer abundance difference (KAD) between short reads and genome assembled sequences.
He, Cheng⋅Lin, Guifang⋅Wei, Hairong⋅Tang, Haibao⋅White, Frank F⋅Valent, Barbara and Liu, Sanzhen
NAR genomics and bioinformatics, vol. 2, (no. 3), pp. lqaa075, September 2020. | Journal Article
 
Increased Power and Accuracy of Causal Locus Identification in Time Series Genome-wide Association in Sorghum.
Miao, Chenyong⋅Miao, Chenyong⋅Xu, Yuhang⋅Xu, Yuhang⋅Liu, Sanzhen⋅Liu, Sanzhen⋅Schnable, Patrick S⋅Schnable, Patrick S.⋅Schnable, James C and Schnable, James C.
Plant physiology, vol. 183, (no. 4), pp. 1898-1909, August 3, 2020. | Journal Article
 
Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors.
Ji, Chonghui⋅Ji, Chonghui⋅Ji, Zhiyuan⋅Ji, Zhiyuan⋅Liu, Bo⋅Liu, Bo⋅Cheng, He⋅Cheng, He⋅Liu, Hua⋅Liu, Hua⋅Liu, Sanzhen⋅Liu, Sanzhen⋅Yang, Bing⋅Yang, Bing⋅Chen, Gongyou and Chen, Gongyou
Plant communications, vol. 1, (no. 4), pp. 100087, July 13, 2020. | Journal Article
2019
Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus
Peng, Zhao⋅Zhao, Peng⋅Zhao, Peng⋅Oliveira-Garcia, Ely⋅Oliveira-Garcia, Ely⋅Oliveira-Garcia, Ely⋅Lin, Guifang⋅Lin, Guifang⋅Lin, Guifang⋅Hu, Ying⋅Hu, Ying⋅Hu, Ying⋅Dalby, Melinda⋅Dalby, Melinda⋅Dalby, Melinda⋅Migeon, Pierre⋅Migeon, Pierre⋅Migeon, Pierre⋅Tang, Haibao⋅Tang, Haibao⋅Tang, Haibao⋅Farman, Mark⋅Farman, Mark⋅Farman, Mark⋅Cook, David⋅Cook, David⋅Cook, David⋅White, Frank F⋅White, Frank F⋅White, Frank F⋅Valent, Barbara⋅Valent, Barbara⋅Valent, Barbara⋅Liu, Sanzhen⋅Liu, Sanzhen and Liu, Sanzhen
PLoS Genetics, vol. 15, (no. 9), Sep 2019. | Journal Article
2018
Genetic mapping of a major gene in triticale conferring resistance to bacterial leaf streak
Wen, Aimin⋅Jayawardana, Malini⋅Fiedler, Jason⋅Sapkota, Suraj⋅Shi, Gongjun⋅Zhao, Peng⋅Liu, Sanzhen⋅White, Frank F⋅Bogdanove, Adam J⋅Li, Xuehui and Liu, Zhaohui
Theoretical and Applied Genetics, vol. 131, (no. 3), pp. 649-658, Mar 2018. | Journal Article
 
TILL-D: An Aegilops tauschii TILLING Resource for Wheat Improvement.
Rawat, Nidhi⋅Rawat, Nidhi⋅Schoen, Adam⋅Schoen, Adam⋅Singh, Lovepreet⋅Singh, Lovepreet⋅Mahlandt, Alexander⋅Mahlandt, Alexander⋅Wilson, Duane L⋅Wilson, Duane L⋅Liu, Sanzhen⋅Liu, Sanzhen⋅Lin, Guifang⋅Lin, Guifang⋅Gill, Bikram S⋅Gill, Bikram S⋅Tiwari, Vijay K and Tiwari, Vijay K
Frontiers in plant science, vol. 9, pp. 1665, 2018. | Journal Article
2017
Homologues of CsLOB1 in citrus function as disease susceptibility genes in citrus canker
Zhang, Junli⋅Zhang, Junli⋅Huguet-Tapia, Jose Carlos⋅Huguet-Tapia, Jose Carlos⋅Hu, Yang⋅Hu, Yang⋅Jones, Jeffrey⋅Jones, Jeffrey⋅Wang, Nian⋅Wang, Nian⋅Liu, Sanzhen⋅Liu, Sanzhen⋅White, Frank F and White, Frank F
Molecular plant pathology, vol. 18, (no. 6), pp. 798-810, Aug 2017. | Journal Article
 
RD26 mediates crosstalk between drought and brassinosteroid signalling pathways
Ye, Huaxun⋅Ye, Huaxun⋅Ye, Huaxun⋅Liu, Sanzhen⋅Liu, Sanzhen⋅Liu, Sanzhen⋅Tang, Buyun⋅Tang, Buyun⋅Tang, Buyun⋅Chen, Jiani⋅Chen, Jiani⋅Chen, Jiani⋅Xie, Zhouli⋅Xie, Zhouli⋅Xie, Zhouli⋅Nolan, Trevor M⋅Nolan, Trevor M⋅Nolan, Trevor⋅Jiang, Hao⋅Jiang, Hao⋅Jiang, Hao⋅Guo, Hongqing⋅Guo, Hongqing⋅Guo, Hongqing⋅Lin, Hung-ying⋅Lin, Hung-ying⋅Lin, Hung-ying⋅Li, Lei⋅Li, Lei⋅Li, Lei⋅Wang, Yanqun⋅Wang, Yanqun⋅Wang, Yanqun⋅Tong, Hongning⋅Tong, Hongning⋅Tong, Hongning⋅Zhang, Mingcai⋅Zhang, Mingcai⋅Zhang, Mingcai⋅Chu, Chengcai⋅Chu, Chengcai⋅Chu, Chengcai⋅Li, Zhaohu⋅Li, Zhaohu⋅Li, Zhaohu⋅Aluru, Maneesha⋅Aluru, Maneesha⋅Aluru, Maneesha⋅Aluru, Srinivas⋅Aluru, Srinivas⋅Aluru, Srinivas⋅Schnable, Patrick S⋅Schnable, Patrick S⋅Schnable, Patrick⋅Yin, Yanhai⋅Yin, Yanhai and Yin, Yanhai
Nature Communications, vol. 8, pp. 14573, Feb 2017. | Journal Article
 
Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS
Hung-ying, Lin⋅Lin, H.-Y.⋅Hung-ying, Lin⋅Liu, Qiang⋅Liu, Q.⋅Liu, Qiang⋅Li, X.⋅Li, Xiao⋅Li, Xiao⋅Yang, Jinliang⋅Yang, Jinliang⋅Yang, J.⋅Liu, S.⋅Liu, Sanzhen⋅Liu, Sanzhen⋅Huang, Yinlian⋅Huang, Yinlian⋅Huang, Y.⋅Scanlon, Michael J⋅Scanlon, M.J.⋅Scanlon, Michael J⋅Nettleton, D.⋅Nettleton, Dan⋅Nettleton, Dan⋅Schnable, Patrick S⋅Schnable, P.S. and Schnable, Patrick S
Genome Biology, vol. 18, 2017. | Journal Article