106 Publications (Page 1 of 5)
2015
A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor.
Zhao, Chaoyang⋅Zhao, C.⋅Escalante, L. N.⋅Escalante, Lucio Navarro⋅Chen, Hang⋅Chen, H.⋅Benatti, Thiago R⋅Benatti, T. R.⋅Qu, Jiaxin⋅Qu, J.⋅Chellapilla, S.⋅Chellapilla, Sanjay⋅Waterhouse, R. M.⋅Waterhouse, Robert M⋅Wheeler, David⋅Wheeler, D.⋅Andersson, Martin N⋅Andersson, M. N.⋅Bao, Riyue⋅Bao, R.⋅Batterton, Matthew⋅Batterton, M.⋅Behura, S. K.⋅Behura, Susanta K⋅Blankenburg, Kerstin P⋅Blankenburg, K. P.⋅Caragea, Doina⋅Caragea, D.⋅Carolan, J. C.⋅Carolan, James C⋅Coyle, Marcus⋅Coyle, M.⋅El-Bouhssini, M.⋅El-Bouhssini, Mustapha⋅Francisco, Liezl⋅Francisco, L.⋅Friedrich, Markus⋅Friedrich, M.⋅Gill, Navdeep⋅Gill, N.⋅Grace, T.⋅Grace, Tony⋅Grimmelikhuijzen, C. J.⋅Grimmelikhuijzen, Cornelis J P⋅Han, Yi⋅Han, Y.⋅Hauser, Frank⋅Hauser, F.⋅Herndon, Nicolae⋅Herndon, N.⋅Holder, Michael⋅Holder, M.⋅Ioannidis, P.⋅Ioannidis, Panagiotis⋅Jackson, L.⋅Jackson, LaRonda⋅Javaid, M.⋅Javaid, Mehwish⋅Jhangiani, Shalini N⋅Jhangiani, S. N.⋅Johnson, A. J.⋅Johnson, Alisha J⋅Kalra, D.⋅Kalra, Divya⋅Korchina, Viktoriya⋅Korchina, V.⋅Kovar, C. L.⋅Kovar, Christie L⋅Lara, Fremiet⋅Lara, F.⋅Lee, Sandra L⋅Lee, S. L.⋅Liu, X.⋅Liu, Xuming⋅Löfstedt, Christer⋅Lofstedt, C.⋅Mata, R.⋅Mata, Robert⋅Mathew, Tittu⋅Mathew, T.⋅Muzny, Donna M⋅Muzny, D. M.⋅Nagar, S.⋅Nagar, Swapnil⋅Nazareth, Lynne V⋅Nazareth, L. V.⋅Okwuonu, G.⋅Okwuonu, Geoffrey⋅Ongeri, F.⋅Ongeri, Fiona⋅Perales, L.⋅Perales, Lora⋅Peterson, Brittany F⋅Peterson, B. F.⋅Pu, L. L.⋅Pu, Ling-Ling⋅Robertson, H. M.⋅Robertson, Hugh M⋅Schemerhorn, B. J.⋅Schemerhorn, Brandon J⋅Scherer, Steven E⋅Scherer, S. E.⋅Shreve, Jacob T⋅Shreve, J. T.⋅Simmons, D.⋅Simmons, DeNard⋅Subramanyam, Subhashree⋅Subramanyam, S.⋅Thornton, Rebecca L⋅Thornton, R. L.⋅Xue, Kun⋅Xue, K.⋅Weissenberger, George M⋅Weissenberger, G. M.⋅Williams, C. E.⋅Williams, Christie E⋅Worley, Kim C⋅Worley, K. C.⋅Zhu, Dianhui⋅Zhu, D.⋅Zhu, Y.⋅Zhu, Yiming⋅Harris, Marion O⋅Harris, M. O.⋅Shukle, Richard H⋅Shukle, R. H.⋅Werren, J. H.⋅Werren, John H⋅Zdobnov, E. M.⋅Zdobnov, Evgeny M⋅Chen, M. S.⋅Chen, Ming-Shun⋅Brown, Susan J⋅Brown, S. J.⋅Stuart, J. J.⋅Stuart, Jeffery J⋅Richards, Stephen and Richards, S.
Current biology : CB, vol. 25, (no. 5), pp. 613-620, March 2, 2015. | Journal Article
 
Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool
Shelton, Jennifer⋅Coleman, Michelle⋅Herndon, Nic⋅Lu, Nanyan⋅Lam, Ernest⋅Anantharaman, Thomas⋅Sheth, Palak and Brown, Susan
BMC Genomics, vol. 16, 2015. | Journal Article
2014
Caudal regulates the spatiotemporal dynamics of pair-rule waves in Tribolium.
El-Sherif, Ezzat⋅Zhu, Xin⋅Fu, Jinping and Brown, Susan J
PLoS genetics, vol. 10, (no. 10), pp. e1004677, October 2014. | Journal Article
 
Essential role of eIF5-mimic protein in animal development is linked to control of ATF4 expression.
Hiraishi, Hiroyuki⋅Oatman, Jamie⋅Haller, Sherry L⋅Blunk, Logan⋅McGivern, Benton⋅Morris, Jacob⋅Papadopoulos, Evangelos⋅Gutierrez, Wade⋅Gordon, Michelle⋅Bokhari, Wahaj⋅Ikeda, Yuka⋅Miles, David⋅Fellers, John⋅Asano, Masayo⋅Wagner, Gerhard⋅Tazi, Loubna⋅Rothenburg, Stefan⋅Brown, Susan J and Asano, Katsura
Nucleic acids research, vol. 42, (no. 16), pp. 10321-10330, 2014. | Journal Article
2013
Interaction between 25S rRNA A loop and eukaryotic translation initiation factor 5B promotes subunit joining and ensures stringent AUG selection.
Hiraishi, Hiroyuki⋅Shin, Byung-Sik⋅Udagawa, Tsuyoshi⋅Nemoto, Naoki⋅Chowdhury, Wasimul⋅Graham, Jymie⋅Cox, Christian⋅Reid, Megan⋅Brown, Susan J and Asano, Katsura
Molecular and cellular biology, vol. 33, (no. 18), pp. 3540-3548, September 2013. | Journal Article
2012
A segmentation clock operating in blastoderm and germband stages of Tribolium development.
El-Sherif, Ezzat⋅Averof, Michalis and Brown, Susan J
Development (Cambridge, England), vol. 139, (no. 23), pp. 4341-4346, December 1, 2012. | Journal Article
 
Asymmetrically expressed axin required for anterior development in Tribolium.
Fu, Jinping⋅Posnien, Nico⋅Bolognesi, Renata⋅Fischer, Tamara D⋅Rayl, Parker⋅Oberhofer, Georg⋅Kitzmann, Peter⋅Brown, Susan J and Bucher, Gregor
Proceedings of the National Academy of Sciences of the United States of America, vol. 109, (no. 20), pp. 7782-6, 2012/May/15. | Journal Article
 
Comparisons of the embryonic development of Drosophila, Nasonia, and Tribolium.
Lynch, Jeremy A⋅El-Sherif, Ezzat and Brown, Susan J
Wiley interdisciplinary reviews. Developmental biology, vol. 1, (no. 1), pp. 16-39, 2012 Jan-Feb. | Journal Article
 
Dissecting systemic RNA interference in the red flour beetle Tribolium castaneum: parameters affecting the efficiency of RNAi.
Miller, Sherry C⋅Miyata, Keita⋅Brown, Susan J and Tomoyasu, Yoshinori
PloS one, vol. 7, (no. 10), pp. e47431, 2012. | Journal Article
 
Genomic and proteomic studies on the effects of the insect growth regulator diflubenzuron in the model beetle species Tribolium castaneum.
Merzendorfer, Hans⋅Kim, Hee S⋅Chaudhari, Sujata S⋅Kumari, Meera⋅Specht, Charles A⋅Butcher, Stephen⋅Brown, Susan J⋅Manak, J R⋅Beeman, Richard W⋅Kramer, Karl and Muthukrishnan, S.
Insect biochemistry and molecular biology, vol. 42, (no. 4), pp. 264-76, 2012/Apr. | Journal Article
 
Parallel Duplication and Partial Subfunctionalization of beta -Catenin/Armadillo during Insect Evolution
Bao, Riyue⋅Bao, R.⋅Fischer, T.⋅Fischer, Tami⋅Bolognesi, Renata⋅Bolognesi, R.⋅Brown, Susan J⋅Brown, S. J.⋅Friedrich, M. and Friedrich, Markus H
Molecular Biology and Evolution, vol. 29, (no. 2), pp. 647-662, 2012. | Journal Article
 
Parallel duplication and partial subfunctionalization of β-catenin/armadillo during insect evolution.
Bao, Riyue⋅Fischer, Tami⋅Bolognesi, Renata⋅Brown, Susan J and Friedrich, Markus H
Molecular biology and evolution, vol. 29, (no. 2), pp. 647-62, 2012/Feb. | Journal Article
2010
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
Kim, Hee S⋅Murphy, Terence⋅Xia, Jing⋅Caragea, Doina⋅Park, Yoonseong⋅Beeman, Richard W⋅Lorenzen, Marce D⋅Butcher, Stephen⋅Manak, JRobert and Brown, Susan J
Nucleic Acids Research, vol. 38, (no. suppl_1), pp. D437-D442, 2010. | Journal Article
 
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum.
Kim, Hee S⋅Murphy, Terence⋅Xia, Jing⋅Caragea, Doina⋅Park, Yoonseong⋅Beeman, Richard W⋅Lorenzen, Marcé D⋅Butcher, Stephen⋅Manak, J. R and Brown, Susan J
Nucleic acids research., vol. 38, pp. D437-D442, 2010. | Journal Article
 
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum.
Kim, Hee S⋅Murphy, Terence⋅Xia, Jing⋅Caragea, Doina⋅Park, Yoonseong Y⋅Beeman, Richard W⋅Lorenzen, Marcé D⋅Butcher, Stephen⋅Manak, J R and Brown, Susan J
Nucleic acids research, vol. 38, (no. Database issue), pp. D437-42, 2010/Jan. | Journal Article
 
Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation
Janssen, Ralf⋅Le Gouar, Martine⋅Pechmann, Matthias⋅Poulin, Francis⋅Bolognesi, Renata⋅Schwager, Evelyn E⋅Hopfen, Corinna⋅Colbourne, John⋅Budd, Graham E⋅Brown, Susan J⋅Prpic, Nikola-Michael⋅Kosiol, Carolin⋅Vervoort, Michel⋅Damen, Wim G⋅Balavoine, Guillaume and McGregor, Alistair P
BMC Evolutionary Biology, vol. 10, pp. 374-374, 2010. | Journal Article
 
Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation.
Janssen, Ralf⋅Le Gouar, Martine⋅Pechmann, Matthias⋅Poulin, Francis⋅Bolognesi, Renata⋅Schwager, Evelyn E⋅Hopfen, Corinna⋅Colbourne, John K⋅Budd, Graham E⋅Brown, Susan J⋅Prpic, Nikola-Michael⋅Kosiol, Carolin⋅Vervoort, Michel⋅Damen, Wim G⋅Balavoine, Guillaume and McGregor, Alistair P
BMC evolutionary biology, vol. 10, pp. 374, 2010. | Journal Article
 
Prediction of alternatively spliced exons using Support Vector Machines
Xia, Jing⋅Caragea, Doina and Brown, Susan J
International Journal of Data Mining and Bioinformatics, vol. 4, (no. 4), pp. 411-430, 2010. | Journal Article
 
The Nasonia genome sequence: finding gems in the jewel (wasp) box.
Brown, Susan J
Insect molecular biology, vol. 19 Suppl 1, pp. v-vii, 2010/Feb. | Journal Article
 
Yeast 18 S rRNA is directly involved in the ribosomal response to stringent AUG selection during translation initiation.
Nemoto, Naoki⋅Singh, C. R⋅Udagawa, Tsuyoshi⋅Wang, Suzhi⋅Thorson, Elizabeth⋅Winter, Zachery⋅Ohira, Takahiro⋅Ii, Miki⋅Valásek, Leos⋅Brown, Susan J and Asano, Katsura
The Journal of biological chemistry, vol. 285, (no. 42), pp. 32200-12, 2010/Oct/15. | Journal Article
2009
Concurrent in situ hybridization and antibody staining in red flour beetle (Tribolium) embryos.
Shippy, Teresa⋅Coleman, Cassondra M⋅Tomoyasu, Yoshinori and Brown, Susan J
Cold Spring Harbor protocols, vol. 2009, (no. 8), pp. pdb.prot5257, 2009/Aug. | Journal Article
 
Genetic regulation of engrailed and wingless in Tribolium segmentation and the evolution of pair-rule segmentation.
Choe, Chong P and Brown, Susan J
Developmental biology, vol. 325, (no. 2), pp. 482-91, 2009/Jan/15. | Journal Article
 
Genomes and Developmental Control: Genetic regulation of engrailed and wingless in Tribolium segmentation and the evolution of pair-rule segmentation
Choe, Chong P and Brown, Susan J
Developmental Biology, vol. 325, (no. 2), pp. 482-491, 2009. | Journal Article
 
Large-scale insertional mutagenesis of a coleopteran stored grain pest, the red flour beetle Tribolium castaneum, identifies embryonic lethal mutations and enhancer traps
Trauner, Jochen⋅Schinko, Johannes⋅Lorenzen, Marcé⋅Shippy, Teresa⋅Wimmer, Ernst A⋅Beeman, Richard W⋅Klingler, Martin⋅Bucher, Gregor and Brown, Susan J
BMC biology., vol. 7, (no. 73), 2009. | Journal Article
 
Large-scale insertional mutagenesis of a coleopteran stored grain pest, the red flour beetle Tribolium castaneum, identifies embryonic lethal mutations and enhancer traps
Trauner, Jochen⋅Schinko, Johannes⋅Lorenzen, Marcé⋅Shippy, Teresa⋅Wimmer, Ernst A⋅Beeman, Richard W⋅Klingler, Martin⋅Bucher, Gregor and Brown, Susan J
BMC Biology, vol. 7, (no. 1), pp. 73, 2009. | Journal Article