48 Publications (Page 1 of 2)
2019
Data Science Could Help Californians Battle Future Wildfires
Wild, David
Next City.org, 20191113. | Journal Article
 
edge2vec: Representation learning using edge semantics for biomedical knowledge discovery
Gao, Zheng⋅Gao, Zheng⋅Gao, Zheng⋅Gao, Zheng⋅Gao, Zheng⋅Fu, Gang⋅Fu, Gang⋅Fu, Gang⋅Fu, Gang⋅Fu, Gang⋅Ouyang, Chunping⋅Ouyang, Chunping⋅Ouyang, Chunping⋅Ouyang, Chunping⋅Ouyang, Chunping⋅Tsutsui, Satoshi⋅Tsutsui, Satoshi⋅Tsutsui, Satoshi⋅Tsutsui, Satoshi⋅Tsutsui, Satoshi⋅Liu, Xiaozhong⋅Liu, Xiaozhong⋅Liu, Xiaozhong⋅Liu, Xiaozhong⋅Liu, Xiaozhong⋅Yang, Jeremy⋅Yang, Jeremy⋅Yang, Jeremy⋅Yang, Jeremy⋅Yang, Jeremy⋅Gessner, Christopher⋅Gessner, Christopher⋅Gessner, Christopher⋅Gessner, Christopher⋅Gessner, Christopher⋅Foote, Brian⋅Foote, Brian⋅Foote, Brian⋅Foote, Brian⋅Foote, Brian⋅Wild, David⋅Wild, David⋅Wild, David⋅Wild, David⋅Wild, David⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Yu, Qi⋅Yu, Qi⋅Yu, Qi⋅Yu, Qi and Yu, Qi
BMC bioinformatics, vol. 20, (no. 1), pp. 306, 2019-Jun-10. | Journal Article
2018
edge2vec: Representation learning using edge semantics for biomedical knowledge discovery
Gao, Zheng⋅Gao, Zheng⋅Gao, Zheng⋅Gao, Zheng⋅Fu, Gang⋅Fu, Gang⋅Fu, Gang⋅Fu, Gang⋅Ouyang, Chunping⋅Ouyang, Chunping⋅Ouyang, Chunping⋅Ouyang, Chunping⋅Tsutsui, Satoshi⋅Tsutsui, Satoshi⋅Tsutsui, Satoshi⋅Tsutsui, Satoshi⋅Liu, Xiaozhong⋅Liu, Xiaozhong⋅Liu, Xiaozhong⋅Liu, Xiaozhong⋅Yang, Jeremy⋅Yang, Jeremy⋅Yang, Jeremy⋅Yang, Jeremy⋅Gessner, Christopher⋅Gessner, Christopher⋅Gessner, Christopher⋅Gessner, Christopher⋅Foote, Brian⋅Foote, Brian⋅Foote, Brian⋅Foote, Brian⋅Wild, David⋅Wild, David⋅Wild, David⋅Wild, David⋅Yu, Qi⋅Yu, Qi⋅Yu, Qi⋅Yu, Qi⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying and Ding, Ying
2018-09-06. | Journal Article
 
Netpredictor: R and Shiny package to perform drug-target network analysis and prediction of missing links.
Seal, Abhik and Wild, David J
BMC bioinformatics, vol. 19, (no. 1), pp. 265, July 16, 2018. | Journal Article
2017
PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets
Djokic-Petrovic, Marija⋅Djokic-Petrovic, Marija⋅Cvjetkovic, Vladimir⋅Cvjetkovic, Vladimir⋅Yang, Jeremy⋅Yang, Jeremy⋅Zivanovic, Marko⋅Zivanovic, Marko⋅Wild, David J and Wild, David J
Journal of biomedical semantics, vol. 8, (no. 1), pp. 42, 2017-Sep-20. | Journal Article
2016
An activity canyon characterization of the pharmacological topography
Kulkarni, Varsha and Wild, David
Journal of Cheminformatics, vol. 8, (no. 1), pp. 1-12, Aug 2016. | Journal Article
2015
Novel Phenotypic Outcomes Identified for a Public Collection of Approved Drugs from a Publicly Accessible Panel of Assays.
Lee, Jonathan A⋅Lee, Jonathan A⋅Shinn, Paul⋅Shinn, Paul⋅Jaken, Susan⋅Jaken, Susan⋅Oliver, Sarah⋅Oliver, Sarah⋅Willard, Francis S⋅Willard, Francis S⋅Heidler, Steven⋅Heidler, Steven⋅Peery, Robert B⋅Peery, Robert B⋅Oler, Jennifer⋅Oler, Jennifer⋅Chu, Shaoyou⋅Chu, Shaoyou⋅Southall, Noel⋅Southall, Noel⋅Dexheimer, Thomas S⋅Dexheimer, Thomas S⋅Smallwood, Jeffrey⋅Smallwood, Jeffrey⋅Huang, Ruili⋅Huang, Ruili⋅Guha, Rajarshi⋅Guha, Rajarshi⋅Jadhav, Ajit⋅Jadhav, Ajit⋅Cox, Karen⋅Cox, Karen⋅Austin, Christopher P⋅Austin, Christopher P⋅Simeonov, Anton⋅Simeonov, Anton⋅Sittampalam, G Sitta⋅Sittampalam, G S⋅Husain, Saba⋅Husain, Saba⋅Franklin, Natalie⋅Franklin, Natalie⋅Wild, David J⋅Wild, David J⋅Yang, Jeremy J⋅Yang, Jeremy J⋅Sutherland, Jeffrey J⋅Sutherland, Jeffrey J⋅Thomas, Craig J and Thomas, Craig J
PloS one, vol. 10, (no. 7), pp. e0130796, 2015. | Journal Article
 
Optimizing drug-target interaction prediction based on random walk on heterogeneous networks
Seal, Abhik⋅Ahn, Yong Yeol and Wild, David
Journal of Cheminformatics, vol. 7, (no. 1), pp. 1-12, Aug 2015. | Journal Article
2013
Cheminformatics for the masses: a chance to increase educational opportunities for the next generation of cheminformaticians.
Wild, David J
Journal of cheminformatics, vol. 5, (no. 1), pp. 32, 2013. | Journal Article
 
Electronic laboratory notebooks progress and challenges in implementation.
Machina, Hari K and Wild, David J
Journal of laboratory automation, vol. 18, (no. 4), pp. 264-268, August 2013. | Journal Article
 
Enhanced ranking of PknB Inhibitors using data fusion methods
Seal, Abhik⋅Yogeeswari, Perumal⋅Sriram, Dharmaranjan⋅Consortium, OSDD and Wild, David
Journal of Cheminformatics, vol. 5, 2013. | Journal Article
 
Meta Path-Based Collective Classification in Heterogeneous Information Networks
Kong, Xiangnan⋅Cao, Bokai⋅Yu, Philip S⋅Ding, Ying and Wild, David J
2013-05-20. | Journal Article
 
The ChEMBL database as linked open data
Willighagen, Egon L⋅Waagmeester, Andra⋅Spjuth, Ola⋅Ansell, Peter⋅Williams, Antony J⋅Tkachenko, Valery⋅Hastings, Janna⋅Chen, Bin and Wild, David J
Journal of Cheminformatics, vol. 5, (no. 1), pp. 23, 2013. | Journal Article
2012
Assessing drug target association using semantic linked data.
Chen, Bin⋅Chen, Bin⋅Ding, Ying⋅Ding, Ying⋅Wild, David J and Wild, David J
PLoS computational biology, vol. 8, (no. 7), pp. e1002574, 2012. | Journal Article
 
Discovering Associations in Biomedical Datasets by Link-based Associative Classifier (LAC)
Yu, Pulan and Wild, David
PLoS One, vol. 7, (no. 12), Dec 2012. | Journal Article
 
Fast rule-based bioactivity prediction using associative classification mining
Yu, Pulan and Wild, David J
Journal of Cheminformatics, vol. 4, (no. 1), pp. 29, 2012. | Journal Article
 
Improving integrative searching of systems chemical biology data using semantic annotation.
Chen, Bin⋅Chen, Bin⋅Chen, Bin⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Wild, David J⋅Wild, David J and Wild, David J
Journal of cheminformatics, vol. 4, (no. 1), pp. 6, 2012. | Journal Article
 
In-silico predictive mutagenicity model generation using supervised learning approaches.
Seal, Abhik⋅Passi, Anurag⋅Jaleel, Uc A⋅Wild, David J and Wild, David J
Journal of cheminformatics, vol. 4, (no. 1), pp. 10, 2012. | Journal Article
 
Systems chemical biology and the Semantic Web: what they mean for the future of drug discovery research.
Wild, David J⋅Ding, Ying⋅Sheth, Amit P⋅Harland, Lee⋅Gifford, Eric M and Lajiness, Michael S
Drug discovery today, vol. 17, (no. 9-10), pp. 469-74, 2012/May. | Journal Article
2011
Browsing large‐scale cheminformatics data with dimension reduction
Choi, Jong Youl⋅Bae, Seung‐Hee⋅Qiu, Judy⋅Chen, Bin and Wild, David
Concurrency and Computation: Practice and Experience, vol. 23, (no. 17), pp. 2325, 10 December 2011. | Journal Article
 
Comparing bioassay response and similarity ensemble approaches to probing protein pharmacology.
Chen, Bin⋅McConnell, Kevin J⋅Wale, Nikil⋅Wild, David J and Gifford, Eric M
Bioinformatics (Oxford, England), vol. 27, (no. 21), pp. 3044-9, 2011/Nov/1. | Journal Article
 
Finding complex biological relationships in recent PubMed articles using Bio-LDA.
Wang, Huijun⋅Wang, Huijun⋅Wang, Huijun⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Tang, Jie⋅Tang, Jie⋅Tang, Jie⋅Dong, Xiao⋅Dong, Xiao⋅Dong, Xiao⋅He, Bing⋅He, Bing⋅He, Bing⋅Qiu, Judy⋅Qiu, Judy⋅Qiu, Judy⋅Wild, David J⋅Wild, David J and Wild, David J
PloS one, vol. 6, (no. 3), pp. e17243, 2011. | Journal Article
 
Improving usability and accessibility of cheminformatics tools for chemists through cyberinfrastructure and education.
Guha, Rajarshi⋅Wiggins, Gary D⋅Wild, David J⋅Baik, Mu-Hyun⋅Pierce And, Marlon E and Fox, Geoffrey C
In silico biology, vol. 11, (no. 1), pp. 41-60, 2011-2012. | Journal Article
 
Improving Usability and Accessibility of Cheminformatics Tools for Chemists through Cyberinfrastructure and Education
Guha, Rajarshi⋅Wiggins, Gary D⋅Wild, David J⋅Baik, Mu-Hyun⋅Pierce, Marlon E and Fox, Geoffrey C
In Silico Biology, vol. 11, (no. 1,2), pp. 41-60, 2011. | Journal Article
 
Mining relational paths in integrated biomedical data.
He, Bing⋅He, Bing⋅He, Bing⋅Tang, Jie⋅Tang, Jie⋅Tang, Jie⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Wang, Huijun⋅Wang, Huijun⋅Wang, Huijun⋅Sun, Yuyin⋅Sun, Yuyin⋅Sun, Yuyin⋅Shin, Jae Hong⋅Shin, Jae H⋅Shin, Jae Hong⋅Chen, Bin⋅Chen, Bin⋅Chen, Bin⋅Moorthy, Ganesh⋅Moorthy, Ganesh⋅Moorthy, Ganesh⋅Qiu, Judy⋅Qiu, Judy⋅Qiu, Judy⋅Desai, Pankaj⋅Desai, Pankaj⋅Desai, Pankaj⋅Wild, David J⋅Wild, David J and Wild, David J
PloS one, vol. 6, (no. 12), pp. e27506, 2011. | Journal Article