14 Grants
2021
Subtractive assembly approaches for inferring disease-associated microbial genes and pathways from microbiome sequencing data
Ye, Yuzhen
National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID) (ID: 5R01AI143254-03), $270,268USD, 2018-11-05 -- 2022-10-31
2020
CIBR: Full-Spectrum Prediction of Peptide Tandem Mass Spectra using Deep Neural Networks
Tang, Haixu and Ye, Yuzhen
National Science Foundation (NSF), Direct For Biological Sciences, Div Of Biological Infrastructure (ID: 2011271), $781,018USD, 2020-08-01 -- 2023-07-31
 
MTM 1: An explainable AI system for microbiome characterization and microbiome-based host-phenotype prediction
Doak, Thomas⋅Tang, Haixu and Ye, Yuzhen
National Science Foundation (NSF), Direct For Biological Sciences, Emerging Frontiers (ID: 2025451), $500,000USD, 2020-10-01 -- 2023-09-30
 
Subtractive assembly approaches for inferring disease-associated microbial genes and pathways from microbiome sequencing data
Ye, Yuzhen
National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID) (ID: 5R01AI143254-02), $270,268USD, 2018-11-05 -- 2022-10-31
2019
Subtractive assembly approaches for inferring disease-associated microbial genes and pathways from microbiome sequencing data
Ye, Yuzhen
National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID) (ID: 1R01AI143254-01), $264,518USD, 11/05/2018 -- 10/31/2022
2017
Graph-centric approaches to metatranscriptomic and metaproteomic data analysis
Ye, Yuzhen
National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID) (ID: 5R01AI108888-04), $338,783USD, 08/01/2014 -- 07/31/2018
2016
Graph-centric approaches to metatranscriptomic and metaproteomic data analysis
Ye, Yuzhen
National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID) (ID: 5R01AI108888-03), $339,365USD, 08/01/2014 -- 07/31/2018
2015
Graph-centric approaches to metatranscriptomic and metaproteomic data analysis
Ye, Yuzhen
National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID) (ID: 5R01AI108888-02), $339,919USD, 08/01/2014 -- 07/31/2018
2014
Graph-centric approaches to metatranscriptomic and metaproteomic data analysis
Ye, Yuzhen
National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID) (ID: 1R01AI108888-01A1), $340,446USD, 08/01/2014 -- 07/31/2018
2010
Fragment assembly and metabolic/species diversity analysis for Human microbiome p
Ye, Yuzhen
National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) (ID: 5R01HG004908-03), $252,700USD, 09/26/2008 -- 07/31/2012
2009
CAREER: Computational Protein Function Annotation for Metagenomics
Ye, Yuzhen
National Science Foundation (NSF), Directorate for Biological Sciences, Division of Biological Infrastructure (ID: 0845685), $520,810USD, 09/15/2009 -- 08/31/2014
 
Fragment assembly and metabolic/species diversity analysis for Human microbiome p
Ye, Yuzhen
National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) (ID: 5R01HG004908-02), $255,713USD, 09/26/2008 -- 07/31/2011
2008
Fragment assembly and metabolic/species diversity analysis for Human microbiome p
Ye, Yuzhen
National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) (ID: 1R01HG004908-01), $256,120USD, 09/26/2008 -- 07/31/2011
2004
Flexible Protein Structure Alignment Program and Server
Godzik, Adam and Ye, Yuzhen
National Science Foundation (NSF), Directorate for Biological Sciences, Division of Biological Infrastructure (ID: 0349600), $602,565USD, 09/01/2004 -- 08/31/2007