19 Publications
2022
Induction of tier-2 neutralizing antibodies in mice with a DNA-encoded HIV envelope native like trimer.
Z, Xu⋅S, Walker⋅MC, Wise⋅N, Chokkalingam⋅M, Purwar⋅A, Moore⋅E, Tello-Ruiz⋅Y, Wu⋅S, Majumdar⋅KM, Konrath⋅A, Kulkarni⋅NJ, Tursi⋅FI, Zaidi⋅EL, Reuschel and DW, Kulp
Nature communications. | Journal Article
 
Nucleic acid delivery of immune-focused SARS-CoV-2 nanoparticles drives rapid and potent immunogenicity capable of single-dose protection.
KM, Konrath⋅K, Liaw⋅Y, Wu⋅X, Zhu⋅SN, Walker⋅Z, Xu⋅K, Schultheis⋅N, Chokkalingam⋅H, Chawla⋅J, Du⋅NJ, Tursi⋅A, Moore⋅J, Adolf-Bryfogle⋅M, Purwar and DW, Kulp
Cell reports. | Journal Article
2021
Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design
2018
Potent anti-influenza H7 human monoclonal antibody induces separation of hemagglutinin receptor binding head domains
Turner, Hannah L⋅Pallesen, Jesper⋅Lang, Shanshan⋅Bangaru, Sandhya⋅Urata, Sarah⋅Li, Sheng⋅Cottrell, Christopher A⋅Bowman, Charles A⋅Crowe, James E⋅Wilson, Ian A and Ward, Andrew B
Cold Spring Harbor Laboratory
 
Structural and immunologic correlates of chemically stabilized HIV-1 envelope glycoproteins.
Schiffner, Torben⋅Schiffner, Torben⋅T, Schiffner⋅Schiffner, Torben⋅Schiffner, Torben⋅J, Pallesen⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅RA, Russell⋅Russell, Rebecca A⋅Russell, Rebecca A⋅Russell, Rebecca A⋅Russell, Rebecca A⋅Dodd, Jonathan⋅Dodd, Jonathan⋅J, Dodd⋅Dodd, Jonathan⋅Dodd, Jonathan⋅de Val, Natalia⋅Val N⋅de Val, Natalia⋅de Val, Natalia⋅de Val, Natalia⋅CC, LaBranche⋅La Branche, Celia C⋅LaBranche, Celia C⋅LaBranche, Celia C⋅LaBranche, Celia C⋅Montefiori, David⋅Montefiori, David⋅Montefiori, David⋅Montefiori, David⋅D, Montefiori⋅Tomaras, Georgia D⋅Tomaras, Georgia D⋅Tomaras, Georgia D⋅Tomaras, Georgia D⋅GD, Tomaras⋅Shen, Xiaoying⋅X, Shen⋅Shen, Xiaoying⋅Shen, Xiaoying⋅Shen, Xiaoying⋅SL, Harris⋅Harris, Scarlett L⋅Harris, Scarlett L⋅Harris, Scarlett L⋅Harris, Scarlett L⋅Moghaddam, Amin E⋅Moghaddam, Amin E⋅AE, Moghaddam⋅Moghaddam, Amin E⋅Moghaddam, Amin E⋅Kalyuzhniy, Oleksandr⋅Kalyuzhniy, Oleksandr⋅Kalyuzhniy, Oleksandr⋅O, Kalyuzhniy⋅Kalyuzhniy, Oleksandr⋅Sanders, Rogier W⋅Sanders, Rogier W⋅QJ, Sattentau⋅Sanders, Rogier W⋅Sanders, Rogier W⋅McCoy, Laura E⋅McCoy, Laura E⋅McCoy, Laura E⋅McCoy, Laura E⋅Moore, John P⋅Moore, John P⋅Moore, John P⋅Moore, John P⋅Ward, Andrew B⋅Ward, Andrew B⋅Ward, Andrew B⋅Ward, Andrew B⋅Sattentau, Quentin J⋅Sattentau, Quentin J⋅Sattentau, Quentin J and Sattentau, Quentin J
PLoS pathogens. | Journal Article
2017
An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability
Van Gils, Marit J⋅Van Gils, Marit J⋅Van Den Kerkhof, Tom L G M⋅Van Den Kerkhof, Tom L G M⋅Ozorowski, Gabriel⋅Ozorowski, Gabriel⋅Cottrell, Christopher A⋅Cottrell, Christopher A⋅Sok, Devin⋅Sok, Devin⋅Pauthner, Matthias⋅Pauthner, Matthias⋅Pallesen, Jesper⋅Pallesen, Jesper⋅De Val, Natalia⋅De Val, Natalia⋅Yasmeen, Anila⋅Yasmeen, Anila⋅De Taeye, Steven W⋅De Taeye, Steven W⋅Schorcht, Anna⋅Schorcht, Anna⋅Gumbs, Stephanie⋅Gumbs, Stephanie⋅Johanna, Inez⋅Johanna, Inez⋅Saye-francisco, Karen⋅Saye-francisco, Karen⋅Liang, Chi-hui⋅Liang, Chi-hui⋅Landais, Elise⋅Landais, Elise⋅Nie, Xiaoyan⋅Nie, Xiaoyan⋅Pritchard, Laura K⋅Pritchard, Laura K⋅Crispin, Max⋅Crispin, Max⋅Kelsoe, Garnett⋅Kelsoe, Garnett⋅Wilson, Ian A⋅Wilson, Ian A⋅Schuitemaker, Hanneke⋅Schuitemaker, Hanneke⋅Klasse, Per J⋅Klasse, Per J⋅Moore, John P⋅Moore, John P⋅Burton, Dennis R⋅Burton, Dennis R⋅Ward, Andrew B⋅Ward, Andrew B⋅Sanders, Rogier W and Sanders, Rogier W
Nature Microbiology, vol. 2, (no. 2), pp. 16199, Feb 2017. | Journal Article
2016
An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability
Gils, Marit⋅Gils, Marit J.⋅van Gils, Marit J⋅van Gils, Marit J⋅Kerkhof, Tom L. G. M.⋅Kerkhof, Tom⋅van den Kerkhof, Tom L G M⋅van den Kerkhof, Tom L G M⋅Ozorowski, Gabriel⋅Ozorowski, Gabriel⋅Ozorowski, Gabriel⋅Ozorowski, Gabriel⋅Cottrell, Christopher⋅Cottrell, Christopher A⋅Cottrell, Christopher A.⋅Cottrell, Christopher A⋅Sok, Devin⋅Sok, Devin⋅Sok, Devin⋅Sok, Devin⋅Pauthner, Matthias⋅Pauthner, Matthias⋅Pauthner, Matthias⋅Pauthner, Matthias⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Val, Natalia⋅de Val, Natalia⋅Val, Natalia⋅de Val, Natalia⋅Yasmeen, Anila⋅Yasmeen, Anila⋅Yasmeen, Anila⋅Yasmeen, Anila⋅de Taeye, Steven W⋅Taeye, Steven W.⋅Taeye, Steven⋅de Taeye, Steven W⋅Schorcht, Anna⋅Schorcht, Anna⋅Schorcht, Anna⋅Schorcht, Anna⋅Gumbs, Stephanie⋅Gumbs, Stephanie⋅Gumbs, Stephanie⋅Gumbs, Stephanie⋅Johanna, Inez⋅Johanna, Inez⋅Johanna, Inez⋅Johanna, Inez⋅Saye-Francisco, Karen⋅Saye-Francisco, Karen⋅Saye-Francisco, Karen⋅Saye-Francisco, Karen⋅Liang, Chi-Hui⋅Liang, Chi-Hui⋅Liang, Chi-Hui⋅Liang, Chi-Hui⋅Landais, Elise⋅Landais, Elise⋅Landais, Elise⋅Landais, Elise⋅Nie, Xiaoyan⋅Nie, Xiaoyan⋅Nie, Xiaoyan⋅Nie, Xiaoyan⋅Pritchard, Laura⋅Pritchard, Laura K⋅Pritchard, Laura K⋅Pritchard, Laura K.⋅Crispin, Max⋅Crispin, Max⋅Crispin, Max⋅Crispin, Max⋅Kelsoe, Garnett⋅Kelsoe, Garnett⋅Kelsoe, Garnett⋅Kelsoe, Garnett⋅Wilson, Ian A⋅Wilson, Ian A.⋅Wilson, Ian⋅Wilson, Ian A⋅Schuitemaker, Hanneke⋅Schuitemaker, Hanneke⋅Schuitemaker, Hanneke⋅Schuitemaker, Hanneke⋅Klasse, Per Johan⋅Klasse, Per⋅Klasse, Per Johan⋅Klasse, Per Johan⋅Moore, John P⋅Moore, John P.⋅Moore, John P⋅Moore, John⋅Burton, Dennis R⋅Burton, Dennis R.⋅Burton, Dennis R⋅Burton, Dennis⋅Ward, Andrew B⋅Ward, Andrew B.⋅Ward, Anew⋅Ward, Andrew B⋅Sanders, Rogier W⋅Sanders, Rogier W.⋅Sanders, Rogier and Sanders, Rogier W
Nature Microbiology, vol. 2, pp. 16199. | Journal Article
 
Antibody Treatment of Ebola and Sudan Virus Infection via a Uniquely Exposed Epitope within the Glycoprotein Receptor-Binding Site
Howell, Katie A.⋅Howell, Katie A⋅Howell, Katie A.⋅Qiu, Xiangguo⋅Qiu, Xiangguo⋅Qiu, Xiangguo⋅Brannan, Jennifer M.⋅Brannan, Jennifer M⋅Brannan, Jennifer M.⋅Bryan, Christopher⋅Bryan, Christopher⋅Bryan, Christopher⋅Davidson, Edgar⋅Davidson, Edgar⋅Davidson, Edgar⋅Holtsberg, Frederick W⋅Holtsberg, Frederick W.⋅Holtsberg, Frederick W.⋅Wec, Anna Z.⋅Wec, Anna Z.⋅Wec, Anna Z⋅Shulenin, Sergey⋅Shulenin, Sergey⋅Shulenin, Sergey⋅Biggins, Julia E.⋅Biggins, Julia E⋅Biggins, Julia E.⋅Douglas, Robin⋅Douglas, Robin⋅Douglas, Robin⋅Enterlein, Sven G⋅Enterlein, Sven G.⋅Enterlein, Sven G.⋅Turner, Hannah L.⋅Turner, Hannah L.⋅Turner, Hannah L⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Murin, Charles D.⋅Murin, Charles D⋅Murin, Charles D.⋅He, Shihua⋅He, Shihua⋅He, Shihua⋅Kroeker, Andrea⋅Kroeker, Andrea⋅Kroeker, Andrea⋅Vu, Hong⋅Vu, Hong⋅Vu, Hong⋅Herbert, Andrew S⋅Herbert, Andrew S.⋅Herbert, Andrew S.⋅Fusco, Marnie L.⋅Fusco, Marnie L.⋅Fusco, Marnie L⋅Nyakatura, Elisabeth K⋅Nyakatura, Elisabeth K.⋅Nyakatura, Elisabeth K.⋅Lai, Jonathan R.⋅Lai, Jonathan R⋅Lai, Jonathan R.⋅Keck, Zhen-Yong⋅Keck, Zhen-Yong⋅Keck, Zhen-Yong⋅Foung, Steven K. H.⋅Foung, Steven K H⋅Foung, Steven K.H.⋅Saphire, Erica Ollmann⋅Saphire, Erica Ollmann⋅Saphire, Erica Ollmann⋅Zeitlin, Larry⋅Zeitlin, Larry⋅Zeitlin, Larry⋅Ward, Andrew B⋅Ward, Andrew B.⋅Ward, Andrew B.⋅Chandran, Kartik⋅Chandran, Kartik⋅Chandran, Kartik⋅Doranz, Benjamin J.⋅Doranz, Benjamin J.⋅Doranz, Benjamin J⋅Kobinger, Gary P⋅Kobinger, Gary P.⋅Kobinger, Gary P.⋅Dye, John M⋅Dye, John M.⋅Dye, John M.⋅Aman, M. Javad⋅Aman, M Javad and Aman, M. Javad
Cell Reports, vol. 15, pp. 1514–1526. | Journal Article
 
Pre-fusion structure of a human coronavirus spike protein
Kirchdoerfer, Robert N⋅Kirchdoerfer, Robert N⋅Kirchdoerfer, Robert N⋅Kirchdoerfer, Robert N.⋅Kirchdoerfer, Robert N⋅Kirchdoerfer, Robert N⋅Cottrell, Christopher A⋅Cottrell, Christopher A⋅Cottrell, Christopher A⋅Cottrell, Christopher A⋅Cottrell, Christopher A.⋅Cottrell, Christopher A⋅Wang, Nianshuang⋅Wang, Nianshuang⋅Wang, Nianshuang⋅Wang, Nianshuang⋅Wang, Nianshuang⋅Wang, Nianshuang⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Yassine, Hadi M⋅Yassine, Hadi M⋅Yassine, Hadi M⋅Yassine, Hadi M.⋅Yassine, Hadi M⋅Yassine, Hadi M⋅Turner, Hannah L.⋅Turner, Hannah L⋅Turner, Hannah L⋅Turner, Hannah L⋅Turner, Hannah L⋅Turner, Hannah L⋅Corbett, Kizzmekia S⋅Corbett, Kizzmekia S⋅Corbett, Kizzmekia S⋅Corbett, Kizzmekia S⋅Corbett, Kizzmekia S⋅Corbett, Kizzmekia S.⋅Graham, Barney S.⋅Graham, Barney S⋅Graham, Barney S⋅Graham, Barney S⋅Graham, Barney S⋅Graham, Barney S⋅McLellan, Jason S⋅McLellan, Jason S⋅Mc Lellan, Jason S⋅McLellan, Jason S.⋅McLellan, Jason S⋅Mc Lellan, Jason S⋅Ward, Andrew B⋅Ward, Andrew B⋅Ward, Andrew B⋅Ward, Andrew B.⋅Ward, Andrew B and Ward, Andrew B
Nature, vol. 531, pp. 118–121. | Journal Article
 
Structures of Ebola virus GP and sGP in complex with therapeutic antibodies
Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Murin, Charles D.⋅Murin, Charles D.⋅Murin, Charles D⋅Murin, Charles D⋅Murin, Charles D⋅Val, Natalia⋅De Val, N.⋅Val, Natalia⋅de Val, Natalia⋅De Val, Natalia⋅De Val, Natalia⋅Cottrell, Christopher A⋅Cottrell, Christopher A.⋅Cottrell, Christopher A⋅Cottrell, Christopher A.⋅Cottrell, Christopher A⋅Hastie, Kathryn M.⋅Hastie, Kathryn M⋅Hastie, Kathryn M⋅Hastie, Kathryn M.⋅Hastie, Kathryn M⋅Turner, Hannah L.⋅Turner, Hannah L⋅Turner, Hannah L⋅Turner, Hannah L.⋅Turner, Hannah L⋅Fusco, Marnie L.⋅Fusco, Marnie L.⋅Fusco, Marnie L⋅Fusco, Marnie L⋅Fusco, Marnie L⋅Flyak, Andrew I.⋅Flyak, Andrew I⋅Flyak, Andrew I.⋅Flyak, Andrew I⋅Flyak, Andrew I⋅Zeitlin, Larry⋅Zeitlin, Larry⋅Zeitlin, Larry⋅Zeitlin, Larry⋅Zeitlin, Larry⋅Crowe, James E.⋅Crowe, James E.⋅Crowe, James E⋅Crowe, James E⋅Crowe, James E⋅Andersen, Kristian G.⋅Andersen, Kristian G⋅Andersen, Kristian G⋅Andersen, Kristian G⋅Andersen, Kristian G.⋅Saphire, Erica Ollmann⋅Saphire, Erica O⋅Saphire, Erica O⋅Saphire, Erica Ollmann⋅Saphire, Erica Ollmann⋅Ward, Andrew B.⋅Ward, Andrew B⋅Ward, Andrew B⋅Ward, Andrew B. and Ward, Andrew B
Nature Microbiology, vol. 1, pp. 16128. | Journal Article
2014
Automated particle picking for low-contrast macromolecules in cryo-electron microscopy
Langlois, Robert⋅Langlois, Robert⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Ash, Jordan T⋅Ash, Jordan T.⋅Nam Ho, Danny⋅Ho, Danny Nam⋅Rubinstein, John L⋅Rubinstein, John L.⋅Frank, Joachim and Frank, Joachim
Journal of Structural Biology, vol. 186, pp. 1–7. | Journal Article
 
Trajectories of the ribosome as a Brownian nanomachine
Dashti, Ali⋅Dashti, Ali⋅Schwander, Peter⋅Schwander, Peter⋅Langlois, Robert⋅Langlois, Robert⋅Fung, Russell⋅Fung, Russell⋅Li, Wen⋅Li, Wen⋅Hosseinizadeh, Ahmad⋅Hosseinizadeh, Ahmad⋅Liao, Hstau Y⋅Liao, Hstau Y.⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Sharma, Gyanesh⋅Sharma, Gyanesh⋅Stupina, Vera A⋅Stupina, Vera A.⋅Simon, Anne E.⋅Simon, Anne E⋅Dinman, Jonathan D.⋅Dinman, Jonathan D⋅Frank, Joachim⋅Frank, Joachim⋅Ourmazd, Abbas and Ourmazd, Abbas
Proceedings of the National Academy of Sciences, vol. 111, pp. 17492–17497. | Journal Article
2013
Affinity grid-based cryo-EM of PKC binding to RACK1 on the ribosome
Sharma, Gyanesh⋅Sharma, Gyanesh⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Das, Sanchaita⋅Das, Sanchaita⋅Grassucci, Robert⋅Grassucci, Robert⋅Langlois, Robert⋅Langlois, Robert⋅Hampton, Cheri M.⋅Hampton, Cheri M⋅Kelly, Deborah F.⋅Kelly, Debbie⋅des Georges, Amedee⋅Georges, A.⋅Georges, Amedee⋅Frank, Joachim and Frank, Joachim
Journal of Structural Biology, vol. 181, pp. 190–194. | Journal Article
 
Cryo-EM visualization of the ribosome in termination complex with apo-RF3 and RF1
Pallesen, Jesper⋅Pallesen, Jesper⋅Hashem, Yaser⋅Hashem, Yaser⋅Korkmaz, Gürkan⋅Korkmaz, Gürkan⋅Koripella, Ravi K⋅Koripella, Ravi Kiran⋅Huang, Chenhui⋅Huang, Chenhui⋅Ehrenberg, Måns⋅Ehrenberg, Måns⋅Sanyal, Suparna C⋅Sanyal, Suparna⋅Frank, Joachim and Frank, Joachim
eLife, vol. 2. | Journal Article
 
Fully Automated Particle Selection and Verification in Single-Particle Cryo-EM
Langlois, Robert⋅Ash, Jordan T.⋅Pallesen, Jesper and Frank, Joachim
(pp. 43–66). Springer New York
2011
Reference-free particle selection enhanced with semi-supervised machine learning for cryo-electron microscopy
Langlois, Robert⋅Langlois, Robert⋅Pallesen, Jesper⋅Pallesen, Jesper⋅Frank, Joachim and Frank, Joachim
Journal of Structural Biology, vol. 175, pp. 353–361. | Journal Article
 
Structure of the HIV-1 5\prime Untranslated Region Dimer Alone and in Complex with Gold Nanocolloids: Support of a TAR–TAR-Containing 5\prime Dimer Linkage Site (DLS) and a 3\prime DIS–DIS-Containing DLS
Pallesen, Jesper and Pallesen, Jesper
Biochemistry, vol. 50, pp. 6170–6177. | Journal Article
2010
Characterization of the nuclear export adaptor protein Nmd3 in association with the 60S ribosomal subunit
Sengupta, Jayati⋅Sengupta, Jayati⋅Bussiere, Cyril⋅Bussiere, Cyril⋅Pallesen, Jesper⋅Pallesen, Jesper⋅West, Matthew⋅West, Matthew⋅Johnson, Arlen W⋅Johnson, Arlen W.⋅Frank, Joachim and Frank, Joachim
The Journal of Cell Biology, vol. 189, pp. 1079–1086. | Journal Article
2009
Structure of the HIV-1 Rev response element alone and in complex with regulator of virion (Rev) studied by atomic force microscopy
Pallesen, Jesper⋅Pallesen, Jesper⋅Dong, Mingdong⋅Dong, Mingdong⋅Besenbacher, Flemming⋅Besenbacher, Flemming⋅Kjems, Jørgen and Kjems, Jørgen
FEBS Journal, vol. 276, pp. 4223–4232. | Journal Article