11 Publications
2013
Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella
Rice, Danny⋅Alverson, Andrew⋅Richardson, Aaron O⋅Young, Gregory J⋅Sanchez-Puerta, M. V⋅Munzinger, Jérôme⋅Barry, Kerrie⋅Boore, Jeffrey L⋅Zhang, Yan⋅De Pamphilis, Claude W⋅Knox, Eric B and Palmer, Jeffrey D
Science, vol. 342, (no. 6165), pp. 1468-1473, Dec 20, 2013. | Journal Article
 
The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate.
Richardson, Aaron O⋅Richardson, Aaron O⋅Rice, Danny W⋅Rice, Danny⋅Young, Gregory J⋅Young, Gregory J⋅Alverson, Andrew J⋅Alverson, Andrew⋅Palmer, Jeffrey D and Palmer, Jeffrey D
BMC biology, vol. 11, pp. 29, 2013. | Journal Article
2011
Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber
Alverson, Andrew⋅Alverson, Andrew⋅Rice, Danny⋅Rice, Danny⋅Dickinson, Stephanie⋅Dickinson, Stephanie⋅Barry, Kerrie⋅Barry, Kerrie⋅Palmer, Jeffrey D and Palmer, Jeffrey
Plant Cell, vol. 23, (no. 7), pp. 2499-2513, 2011. | Journal Article
 
The Mitochondrial Genome of the Legume Vigna radiata and the Analysis of Recombination across Short Mitochondrial Repeats
Alverson, Andrew⋅Alverson, Andrew J⋅Shi, Zhuo⋅Zhuo, Shi⋅Rice, Danny W⋅Rice, Danny⋅Sloan, Daniel B⋅Sloan, Daniel B⋅Palmer, Jeffrey D and Palmer, Jeffrey D
PLoS ONE, vol. 6, (no. 1), 2011. | Journal Article
2010
Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).
Alverson, Andrew⋅Wei, XiaoXin⋅Rice, Danny⋅Stern, David B⋅Barry, Kerrie and Palmer, Jeffrey D
Molecular biology and evolution, vol. 27, (no. 6), pp. 1436-48, 2010/Jun. | Journal Article
 
Localized hypermutation and associated gene losses in legume chloroplast genomes.
Magee, Alan M⋅Aspinall, Sue⋅Rice, Danny⋅Cusack, Brian P⋅Sémon, Marie⋅Perry, Antoinette S⋅Stefanovic, Sasa⋅Milbourne, Dan⋅Barth, Susanne⋅Palmer, Jeffrey D⋅Gray, John⋅Kavanagh, Tony A and Wolfe, Kenneth
Genome research, vol. 20, (no. 12), pp. 1700-10, 2010/Dec. | Journal Article
2008
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
Ming, R.⋅Ming, Ray⋅Hou, Shaobin⋅Hou, S.⋅Feng, Y.⋅Feng, Yun⋅Yu, Qingyi⋅Yu, Q.⋅Dionne-Laporte, Alexandre⋅Dionne-Laporte, A.⋅Saw, Jimmy H⋅Saw, J.H.⋅Senin, P.⋅Senin, Pavel⋅Wang, Wei⋅Wang, W.⋅Ly, B.V.⋅Ly, Benjamin V⋅Lewis, K.L.T.⋅Lewis, Kanako L⋅Salzberg, Steven L⋅Salzberg, S.L.⋅Feng, L.⋅Feng, Lu⋅Jones, M.R.⋅Jones, Meghan R⋅Skelton, R.L.⋅Skelton, Rachel L⋅Murray, J.E.⋅Murray, Jan E⋅Chen, C.⋅Chen, Cuixia⋅Qian, Wubin⋅Qian, W.⋅Shen, J.⋅Shen, Junguo⋅Du, P.⋅Du, Peng⋅Eustice, Moriah⋅Eustice, M.⋅Tong, E.⋅Tong, Eric⋅Tang, H.⋅Tang, Haibao⋅Lyons, Eric⋅Lyons, E.⋅Paull, Robert E⋅Paull, R.E.⋅Michael, Todd P⋅Michael, T.P.⋅Wall, Kerr⋅Wall, K.⋅Rice, Danny⋅Rice, D.W.⋅Albert, H.⋅Albert, Henrik H⋅Wang, M.-L.⋅Wang, Ming Li⋅Zhu, Y.J.⋅Zhu, Judy⋅Schatz, Michael⋅Schatz, M.⋅Nagarajan, Niranjan⋅Nagarajan, N.⋅Acob, Ricelle A⋅Acob, R.A.⋅Guan, P.⋅Guan, Peizhu⋅Blas, A.⋅Blas, Andrea⋅Wai, Ching M⋅Wai, C.M.⋅Ackerman, Christine M⋅Ackerman, C.M.⋅Ren, Yan⋅Ren, Y.⋅Liu, C.⋅Liu, Chao⋅Wang, J.⋅Wang, Jianmei⋅Wang, Jianping⋅Wang, J.⋅Na, J.-K.⋅Na, Jong-Kuk⋅Shakirov, Eugene V⋅Shakirov, E.V.⋅Haas, Brian⋅Haas, B.⋅Thimmapuram, J.⋅Thimmapuram, Jyothi⋅Nelson, D.⋅Nelson, David L⋅Wang, Xiyin⋅Wang, X.⋅Bowers, John E⋅Bowers, J.E.⋅Gschwend, A.R.⋅Gschwend, Andrea R⋅Delcher, Arthur L⋅Delcher, A.L.⋅Singh, R.⋅Singh, Ratnesh⋅Suzuki, J.Y.⋅Suzuki, Jon Y⋅Tripathi, S.⋅Tripathi, Savarni⋅Neupane, K.⋅Neupane, Kabi⋅Wei, H.⋅Wei, Hairong⋅Irikura, Beth⋅Irikura, B.⋅Paidi, Maya⋅Paidi, M.⋅Jiang, Ning⋅Jiang, N.⋅Zhang, Wenli⋅Zhang, W.⋅Presting, Gernot⋅Presting, G.⋅Windsor, Aaron⋅Windsor, A.⋅Navajas-Pérez, R.⋅Navajas-Perez, Rafael⋅Torres, Manuel J⋅Torres, M.J.⋅Feltus, FAlex⋅Feltus, F.A.⋅Porter, B.⋅Porter, Brad⋅Li, Y.⋅Li, Yingjun⋅Burroughs, A.M.⋅Burroughs, AMax⋅Luo, Mingcheng⋅Luo, M.-C.⋅Liu, L.⋅Liu, Lei⋅Christopher, David A⋅Christopher, D.A.⋅Mount, Stephen M⋅Mount, S.M.⋅Moore, Paul H⋅Moore, P.H.⋅Sugimura, T.⋅Sugimura, Tak⋅Jiang, J.⋅Jiang, Jiming⋅Schuler, Mary A⋅Schuler, M.A.⋅Friedman, Vikki⋅Friedman, V.⋅Mitchell Olds, Thomas⋅Mitchell-Olds, T.⋅Shippen, Dorothy E⋅Shippen, D.E.⋅De Pamphilis, Claude W⋅Depamphilis, C.W.⋅Palmer, Jeffrey D⋅Palmer, J.D.⋅Freeling, M.⋅Freeling, Michael⋅Paterson, Andrew⋅Paterson, A.H.⋅Gonsalves, Dennis⋅Gonsalves, D.⋅Wang, Lei⋅Wang, L.⋅Alam, Maqsudul and Alam, M.
Nature, vol. 452, (no. 7190), pp. 991-996, 2008. | Journal Article
2006
An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
Rice, Danny and Palmer, Jeffrey D
BMC Biology, vol. 4, (no. 1), 2006. | Journal Article
 
An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters.
Rice, Danny and Palmer, Jeffrey D
BMC biology, vol. 4, pp. 31, 2006. | Journal Article
2004
Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics.
Soltis, Douglas E⋅Albert, Victor A⋅Savolainen, Vincent⋅Hilu, Khidir W⋅Qiu, Yin Long⋅Chase, Mark W⋅Farris, James S⋅Stefanovic, Sasa⋅Rice, Danny⋅Palmer, Jeffrey D and Soltis, P.
Trends in plant science, vol. 9, (no. 10), pp. 477-83, 2004/Oct. | Journal Article
 
Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?
Stefanovic, Sasa⋅Rice, Danny and Palmer, Jeffrey D
BMC evolutionary biology, vol. 4, (no. 1), pp. 35, 2004/Sep/28. | Journal Article