12 Publications
2013
Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex
Tucker, Abraham E⋅Tucker, Abraham E⋅Ackerman, Matthew S⋅Ackerman, Matthew S⋅Eads, Brian⋅Eads, Brian D⋅Xu, Sen⋅Xu, Sen⋅Lynch, Michael and Lynch, Michael
Proceedings of the National Academy of Sciences of the United States of America, vol. 110, (no. 39), Sep 24, 2013. | Journal Article
2012
Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila
Smibert, Peter⋅Miura, Pedro⋅Westholm, Jakub O⋅Shenker, Sol⋅May, Gemma⋅Duff, Michael O⋅Zhang, Dayu⋅Eads, Brian⋅Carlson, Joe⋅Brown, James B⋅Eisman, Robert C⋅Andrews, Justen⋅Kaufman, Thomas⋅Cherbas, Peter T⋅Celniker, Susan E⋅Graveley, Brenton R and Lai, Eric
Cell Reports, vol. 1, (no. 3), pp. 277-289, 2012. | Journal Article
 
The spread of a transposon insertion in Rec8 is associated with obligate asexuality in Daphnia
Eads, Brian⋅Tsuchiya, Dai⋅Andrews, Justen⋅Lynch, Michael and Zolan, Miriam E
Proceedings of the National Academy of Sciences, USA, vol. 109, (no. 3), pp. 858-863, 2012. | Journal Article
2011
The developmental transcriptome of Drosophila melanogaster.
Graveley, Brenton R⋅Graveley, Brenton R⋅Brooks, Angela N⋅Brooks, Angela N⋅Carlson, Joseph W⋅Carlson, Joseph W⋅Duff, Michael O⋅Duff, Michael O⋅Landolin, Jane M⋅Landolin, Jane M⋅Yang, Li⋅Yang, Li⋅Artieri, Carlo G⋅Artieri, Carlo G⋅Baren, Marijke J⋅van Baren, Marijke J⋅Boley, Nathan⋅Boley, Nathan⋅Booth, Benjamin W⋅Booth, Benjamin W⋅Brown, James B⋅Brown, James B⋅Cherbas, Lucy⋅Cherbas, Lucy⋅Davis, Carrie A⋅Davis, Carrie A⋅Dobin, Alex⋅Dobin, Alex⋅Li, Renhua⋅Li, Renhua⋅Lin, Wei⋅Lin, Wei⋅Malone, John H⋅Malone, John H⋅Mattiuzzo, Nicolas R⋅Mattiuzzo, Nicolas R⋅Miller, David⋅Miller, David⋅Sturgill, David⋅Sturgill, David⋅Tuch, Brian B⋅Tuch, Brian B⋅Zaleski, Chris⋅Zaleski, Chris⋅Zhang, Dayu⋅Zhang, Dayu⋅Blanchette, Marco⋅Blanchette, Marco⋅Dudoit, Sandrine⋅Dudoit, Sandrine⋅Eads, Brian⋅Eads, Brian⋅Green, Richard E⋅Green, Richard E⋅Hammonds, Ann⋅Hammonds, Ann⋅Jiang, Lichun⋅Jiang, Lichun⋅Kapranov, Phil⋅Kapranov, Phil⋅Langton, Laura⋅Langton, Laura⋅Perrimon, Norbert⋅Perrimon, Norbert⋅Sandler, Jeremy E⋅Sandler, Jeremy E⋅Wan, Kenneth H⋅Wan, Kenneth H⋅Willingham, Aarron⋅Willingham, Aarron⋅Zhang, Yu⋅Zhang, Yu⋅Zou, Yi⋅Zou, Yi⋅Andrews, Justen⋅Andrews, Justen⋅Bickel, Peter J⋅Bickel, Peter J⋅Brenner, Steven E⋅Brenner, Steven E⋅Brent, Michael R⋅Brent, Michael R⋅Cherbas, Peter⋅Cherbas, Peter T⋅Gingeras, Thomas⋅Gingeras, Thomas R⋅Hoskins, Roger A⋅Hoskins, Roger A⋅Kaufman, Thomas C⋅Kaufman, Thomas C⋅Oliver, Brian⋅Oliver, Brian⋅Celniker, Susan E⋅Celniker, Susan E⋅Mattiuzzo, Nicolas R⋅Graveley, Brenton R⋅Kaufman, Thomas C⋅Yang, Li⋅Carlson, Joseph W⋅Green, Richard E⋅Bickel, Peter J⋅Brooks, Angela N⋅Kapranov, Phil⋅Li, Renhua⋅Eads, Brian⋅Lin, Wei⋅Cherbas, Peter⋅Zaleski, Chris⋅Zhang, Yu⋅Brent, Michael R⋅Andrews, Justen⋅Artieri, Carlo G⋅Jiang, Lichun⋅Brenner, Steven E⋅Tuch, Brian B⋅Duff, Michael O⋅Booth, Benjamin W⋅Malone, John H⋅Boley, Nathan⋅Dobin, Alex⋅Perrimon, Norbert⋅Gingeras, Thomas R⋅van Baren, Marijke J⋅Tuch, Brian B⋅Brown, James B⋅Brenner, Steven E⋅Jiang, Lichun⋅Artieri, Carlo G⋅Andrews, Justen⋅Brent, Michael R⋅Zhang, Yu⋅Zaleski, Chris⋅Cherbas, Peter⋅Lin, Wei⋅Eads, Brian⋅Li, Renhua⋅Kapranov, Phil⋅Brooks, Angela N⋅Bickel, Peter J⋅Green, Richard E⋅Carlson, Joseph W⋅Yang, Li⋅Kaufman, Thomas C⋅Graveley, Brenton R⋅Mattiuzzo, Nicolas R⋅Langton, Laura⋅Zhang, Dayu⋅Davis, Carrie A⋅Celniker, Susan E⋅Oliver, Brian⋅Sturgill, David⋅Landolin, Jane M⋅Zou, Yi⋅Wan, Kenneth H⋅Miller, David⋅Cherbas, Lucy⋅Willingham, Aarron⋅Hammonds, Ann⋅Dudoit, Sandrine⋅Hoskins, Roger A⋅Blanchette, Marco⋅Brown, James B⋅Sandler, Jeremy E⋅Booth, Benjamin W⋅Duff, Michael O⋅Malone, John H⋅Boley, Nathan⋅Dobin, Alex⋅Perrimon, Norbert⋅Gingeras, Thomas R⋅van Baren, Marijke J⋅Sandler, Jeremy E⋅Blanchette, Marco⋅Hoskins, Roger A⋅Dudoit, Sandrine⋅Hammonds, Ann⋅Willingham, Aarron⋅Cherbas, Lucy⋅Miller, David⋅Wan, Kenneth H⋅Zou, Yi⋅Landolin, Jane M⋅Sturgill, David⋅Oliver, Brian⋅Celniker, Susan E⋅Davis, Carrie A⋅Zhang, Dayu and Langton, Laura
Nature, vol. 471, (no. 7339), pp. 473-9, 2011/Mar/24. | Journal Article
 
The ecoresponsive genome of Daphnia pulex.
Colbourne, John K⋅Colbourne, John K⋅Pfrender, Michael E⋅Pfrender, Michael E⋅Gilbert, Donald G⋅Gilbert, Donald⋅Thomas, William Kelley⋅Thomas, W Kelley⋅Tucker, Abraham⋅Tucker, Abraham⋅Oakley, Todd H⋅Oakley, Todd⋅Tokishita, Shinichi⋅Tokishita, Shinichi⋅Aerts, Andrea⋅Aerts, Andrea⋅Arnold, Georg J⋅Arnold, Georg J⋅Basu, Malay Kumar⋅Basu, Malay K⋅Bauer, Darren J⋅Bauer, Darren J⋅Cáceres, Carla E⋅Caceres, Carla⋅Cáceres, Carla E⋅Carmel, Liran⋅Carmel, Liran⋅Casola, Claudio⋅Casola, Claudio⋅Choi, Jeong-Hyeon⋅Choi, Jeong-Hyeon⋅Detter, John C⋅Detter, John C⋅Dong, Qunfeng⋅Dong, Qunfeng⋅Dusheyko, Serge⋅Dusheyko, Serge⋅Eads, Brian D⋅Eads, Brian⋅Fröhlich, Thomas⋅Fröhlich, Thomas⋅Geiler-Samerotte, Kerry A⋅Geiler-Samerotte, Kerry A⋅Gerlach, Daniel⋅Gerlach, Daniel⋅Hatcher, Phil⋅Hatcher, Phil⋅Jogdeo, Sanjuro⋅Jogdeo, Sanjuro⋅Krijgsveld, Jeroen⋅Krijgsveld, Jeroen⋅Kriventseva, Evgenia V⋅Kriventseva, Evgenia V⋅Kultz, Dietmar⋅Kültz, Dietmar⋅Kültz, Dietmar⋅Laforsch, Christian⋅Laforsch, Christian⋅Lindquist, Erika⋅Lindquist, Erika⋅Lopez, Jacqueline⋅Lopez, Jacqueline⋅Manak, J Robert⋅Manak, J R⋅Muller, Jean⋅Muller, Jean⋅Pangilinan, Jasmyn⋅Pangilinan, Jasmyn⋅Patwardhan, Rupali P⋅Patwardhan, Rupali P⋅Pitluck, Samuel⋅Pitluck, Samuel⋅Pritham, Ellen J⋅Pritham, Ellen J⋅Rechtsteiner, Andreas⋅Rechtsteiner, Andreas⋅Rho, Mina⋅Rho, Mina⋅Rogozin, Igor B⋅Rogozin, Igor B⋅Sakarya, Onur⋅Sakarya, Onur⋅Salamov, Asaf⋅Salamov, Asaf⋅Schaack, Sarah⋅Schaack, Sarah⋅Shapiro, Harris⋅Shapiro, Harris⋅Shiga, Yasuhiro⋅Shiga, Yasuhiro⋅Skalitzky, Courtney⋅Skalitzky, Courtney⋅Smith, Zachary⋅Smith, Zachary⋅Souvorov, Alexander⋅Souvorov, Alexander⋅Sung, Way⋅Sung, Way⋅Tang, Zuojian⋅Tang, Zuojian⋅Tsuchiya, Dai⋅Tsuchiya, Dai⋅Tu, Hank⋅Tu, Hank⋅Vos, Harmjan⋅Vos, Harmjan⋅Wang, Mei⋅Wang, Mei⋅Wolf, Yuri I⋅Wolf, Yuri I⋅Yamagata, Hideo⋅Yamagata, Hideo⋅Yamada, Takuji⋅Yamada, Takuji⋅Ye, Yuzhen⋅Ye, Yuzhen⋅Shaw, Joseph R⋅Shaw, Joseph⋅Andrews, Justen⋅Andrews, Justen⋅Crease, Teresa J⋅Crease, Teresa J⋅Tang, Haixu⋅Tang, Haixu⋅Lucas, Susan M⋅Lucas, Susan M⋅Robertson, Hugh M⋅Robertson, Hugh M⋅Bork, Peer⋅Bork, Peer⋅Koonin, Eugene V⋅Koonin, Eugene V⋅Zdobnov, Evgeny⋅Zdobnov, Evgeny M⋅Grigoriev, Igor⋅Grigoriev, Igor V⋅Lynch, Michael⋅Lynch, Michael⋅Boore, Jeffrey L and Boore, Jeffrey L
Science (New York, N.Y.), vol. 331, (no. 6017), pp. 555-61, 2011/Feb/4. | Journal Article
 
The transcriptional diversity of 25 Drosophila cell lines.
Cherbas, Lucy⋅Cherbas, Lucy⋅Cherbas, Lucy⋅Willingham, Aarron⋅Willingham, Aarron⋅Willingham, Aarron⋅Zhang, Dayu⋅Zhang, Dayu⋅Zhang, Dayu⋅Yang, Li⋅Yang, Li⋅Yang, Li⋅Zou, Yi⋅Zou, Yi⋅Zou, Yi⋅Eads, Brian D⋅Eads, Brian D⋅Eads, Brian⋅Carlson, Joseph W⋅Carlson, Joseph W⋅Carlson, Joseph W⋅Landolin, Jane M⋅Landolin, Jane M⋅Landolin, Jane M⋅Kapranov, Philipp⋅Kapranov, Philipp⋅Kapranov, Philipp⋅Dumais, Jacqueline⋅Dumais, Jacqueline⋅Dumais, Jacqueline⋅Samsonova, Anastasia⋅Samsonova, Anastasia⋅Samsonova, Anastasia⋅Choi, Jeong-Hyeon⋅Choi, Jeong-Hyeon⋅Choi, Jeong-Hyeon⋅Roberts, Johnny⋅Roberts, Johnny⋅Roberts, Johnny⋅Davis, Carrie A⋅Davis, Carrie A⋅Davis, Carrie A⋅Tang, Haixu⋅Tang, Haixu⋅Tang, Haixu⋅van Baren, Marijke J⋅van Baren, Marijke J⋅Baren, Marijke J⋅Ghosh, Srinka⋅Ghosh, Srinka⋅Ghosh, Srinka⋅Dobin, Alexander⋅Dobin, Alexander⋅Dobin, Alexander⋅Bell, Kim⋅Bell, Kim⋅Bell, Kim⋅Lin, Wei⋅Lin, Wei⋅Lin, Wei⋅Langton, Laura⋅Langton, Laura⋅Langton, Laura⋅Duff, Michael O⋅Duff, Michael O⋅Duff, Michael O⋅Tenney, Aaron E⋅Tenney, Aaron E⋅Tenney, Aaron E⋅Zaleski, Chris⋅Zaleski, Chris⋅Zaleski, Chris⋅Brent, Michael R⋅Brent, Michael R⋅Brent, Michael R⋅Hoskins, Roger A⋅Hoskins, Roger A⋅Hoskins, Roger A⋅Kaufman, Thomas C⋅Kaufman, Thomas C⋅Kaufman, Thomas C⋅Andrews, Justen⋅Andrews, Justen⋅Andrews, Justen⋅Graveley, Brenton R⋅Graveley, Brenton R⋅Graveley, Brenton R⋅Perrimon, Norbert⋅Perrimon, Norbert⋅Perrimon, Norbert⋅Celniker, Susan E⋅Celniker, Susan E⋅Celniker, Susan E⋅Gingeras, Thomas R⋅Gingeras, Thomas⋅Gingeras, Thomas R⋅Cherbas, Peter T⋅Cherbas, Peter and Cherbas, Peter
Genome research, vol. 21, (no. 2), pp. 301-14, 2011/Feb. | Journal Article
2009
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function
Costello, James⋅Dalkilic, Mehmet M⋅Beason, Scott M⋅Gehlhausen, Jeff R⋅Patwardhan, Rupali⋅Middha, Sumit⋅Eads, Brian and Andrews, Justen
Genome Biology, vol. 10, (no. 9), pp. R97-R97, 2009. | Journal Article
 
Methods for meiotic chromosome preparation, immunofluorescence, and fluorescence in situ hybridization in Daphnia pulex.
Tsuchiya, Dai⋅Eads, Brian and Zolan, Miriam E
Methods in molecular biology (Clifton, N.J.), vol. 558, pp. 235-49, 2009. | Journal Article
 
Methods for Meiotic Chromosome Preparation, Immunofluorescence, and Fluorescence in situ Hybridization in Daphnia pulex
Tsuchiya, D.⋅Eads, Brian and Zolan, Miriam E
Methods in Molecular Biology, vol. 558, pp. 235-249, 2009. | Journal Article
2008
Ecological genomics in Daphnia: stress responses and environmental sex determination
Eads, Brian⋅Andrews, Justen and Colbourne, John K
Heredity, vol. 100, (no. 2), pp. 184-90, Feb 2008. | Journal Article
 
Localization of the Genetic Determinants of Meiosis Suppression in Daphnia pulex
Lynch, Michael⋅Lynch, Michael⋅Seyfert, Amanda⋅Seyfert, Amanda⋅Eads, Brian⋅Eads, Brian⋅Williams, Emily and Williams, Emily
Genetics, vol. 180, (no. 1), pp. 317-27, Sep 2008. | Journal Article
2007
Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex.
Eads, Brian⋅Eads, Brian D⋅Colbourne, John K⋅Colbourne, John K⋅Bohuski, Elizabeth⋅Bohuski, Elizabeth⋅Andrews, Justen and Andrews, Justen
BMC genomics, vol. 8, pp. 464, 2007. | Journal Article