177 Publications (Page 1 of 8)
2024
A Maturity Model for Operations in Neuroscience Research
Johnson, Erik C.⋅Nguyen, Thinh T.⋅Dichter, Benjamin K.⋅Zappulla, Frank⋅Kosma, Montgomery⋅Gunalan, Kabilar⋅Halchenko, Yaroslav O.⋅Neufeld, Shay Q.⋅Schirner, Michael⋅Ritter, Petra⋅Martone, Maryann E.⋅Wester, Brock⋅Pestilli, Franco and Yatsenko, Dimitri
. | Journal Article
 
ezBIDS: Guided standardization of neuroimaging data interoperable with major data archives and platforms. Scientific Data
. | Journal Article
 
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
AI, Renton⋅Renton, Angela I.⋅Renton, Angela I⋅Dao, Thuy T.⋅Dao, Thuy T⋅TT, Dao⋅Johnstone, Tom⋅Johnstone, Tom⋅T, Johnstone⋅Johnstone, Tom⋅Civier, Oren⋅Civier, Oren⋅Civier, Oren⋅O, Civier⋅Sullivan, Ryan P.⋅RP, Sullivan⋅Sullivan, Ryan P⋅DJ, White⋅White, David J.⋅White, David J⋅Lyons, Paris⋅Lyons, Paris⋅P, Lyons⋅Lyons, Paris⋅Slade, Benjamin M⋅Slade, Benjamin M.⋅BM, Slade⋅Abbott, David F.⋅DF, Abbott⋅Abbott, David F⋅Amos, Toluwani J.⋅Amos, Toluwani J⋅TJ, Amos⋅Bollmann, Saskia⋅S, Bollmann⋅Botting, Andy⋅Botting, Andy⋅Botting, Andy⋅A, Botting⋅MEJ, Campbell⋅Campbell, Megan E J⋅Campbell, Megan E. J.⋅Chang, Jeryn⋅Chang, Jeryn⋅Chang, Jeryn⋅J, Chang⋅Close, Thomas G.⋅Close, Thomas G⋅Dörig, Monika⋅Dörig, Monika⋅Dörig, Monika⋅Eckstein, Korbinian⋅Eckstein, Korbinian⋅Eckstein, Korbinian⋅Egan, Gary F⋅Egan, Gary F.⋅Evas, Stefanie⋅Evas, Stefanie⋅Evas, Stefanie⋅Flandin, Guillaume⋅Flandin, Guillaume⋅Flandin, Guillaume⋅Garner, Kelly G.⋅Garner, Kelly G⋅Garrido, Marta I.⋅Garrido, Marta I⋅Ghosh, Satrajit S⋅Ghosh, Satrajit S.⋅Grignard, Martin⋅Grignard, Martin⋅Grignard, Martin⋅Halchenko, Yaroslav O⋅Halchenko, Yaroslav O.⋅Hannan, Anthony J.⋅Hannan, Anthony J⋅Heinsfeld, Anibal S.⋅Heinsfeld, Anibal S⋅Huber, Laurentius⋅Huber, Laurentius⋅Huber, Laurentius⋅Hughes, Matthew E⋅Hughes, Matthew E.⋅Kaczmarzyk, Jakub R.⋅Kaczmarzyk, Jakub R⋅Kasper, Lars⋅Kasper, Lars⋅Kasper, Lars⋅Kuhlmann, Levin⋅Kuhlmann, Levin⋅Kuhlmann, Levin⋅Lou, Kexin⋅Lou, Kexin⋅Lou, Kexin⋅Mantilla-Ramos, Yorguin-Jose⋅Mantilla-Ramos, Yorguin-Jose⋅Mantilla-Ramos, Yorguin Jose⋅Mattingley, Jason B⋅Mattingley, Jason B.⋅Meier, Michael L⋅Meier, Michael L.⋅Morris, Jo⋅Morris, Jo⋅Morris, Jo⋅Narayanan, Akshaiy⋅Narayanan, Akshaiy⋅Pestilli, Franco⋅Pestilli, Franco⋅Pestilli, Franco⋅Puce, Aina⋅Puce, Aina⋅Puce, Aina⋅Ribeiro, Fernanda L.⋅Ribeiro, Fernanda L⋅Rogasch, Nigel C⋅Rogasch, Nigel C.⋅Rorden, Chris⋅Rorden, Chris⋅Rorden, Chris⋅Schira, Mark M⋅Schira, Mark M.⋅Shaw, Thomas B⋅Shaw, Thomas B.⋅Sowman, Paul F⋅Sowman, Paul F.⋅Spitz, Gershon⋅Spitz, Gershon⋅Spitz, Gershon⋅Stewart, Ashley W.⋅Stewart, Ashley W⋅Ye, Xincheng⋅Ye, Xincheng⋅Ye, Xincheng⋅Zhu, Judy D⋅Zhu, Judy D.⋅Narayanan, Aswin and Bollmann, Steffen
Nature Methods. | Journal Article
2023
A labeled Clinical-MRI dataset of Nigerian brains
Wogu, Eberechi⋅Filima, Patrick⋅Caron, Bradley⋅Levitas, Daniel⋅Herholz, Peer⋅Leal, Catherine⋅Mehboob, Mohammed F.⋅Hayashi, Soichi⋅Akintoye, Simisola⋅Ogoh, George⋅Godwin, Tawe⋅Eke, Damian and Pestilli, Franco
. | Journal Article
 
Associative white matter tracts selectively predict sensorimotor learning
 
brainlife.io: A decentralized and open source cloud platform to support neuroscience research
Hayashi, Soichi⋅Caron, Bradley A.⋅Heinsfeld, Anibal Sólon⋅Vinci-Booher, Sophia⋅McPherson, Brent⋅Bullock, Daniel N.⋅Bertò, Giulia⋅Niso, Guiomar⋅Hanekamp, Sandra⋅Levitas, Daniel⋅Ray, Kimberly⋅MacKenzie, Anne⋅Kitchell, Lindsey⋅Leong, Josiah K.⋅Nascimento-Silva, Filipi⋅Koudoro, Serge⋅Willis, Hanna⋅Jolly, Jasleen K.⋅Pisner, Derek⋅Zuidema, Taylor R.⋅Kurzawski, Jan W.⋅Mikellidou, Kyriaki⋅Bussalb, Aurore⋅Rorden, Christopher⋅Victory, Conner⋅Bhatia, Dheeraj⋅Aydogan, Dogu Baran⋅Yeh, Fang-Cheng F.⋅Delogu, Franco⋅Guaje, Javier⋅Veraart, Jelle⋅Bollman, Steffen⋅Stewart, Ashley⋅Fischer, Jeremy⋅Faskowitz, Joshua⋅Chaumon, Maximilien⋅Fabrega, Ricardo⋅Hunt, David⋅McKee, Shawn⋅Brown, Shawn T.⋅Heyman, Stephanie⋅Iacovella, Vittorio⋅Mejia, Amanda F.⋅Marinazzo, Daniele⋅Craddock, R. Cameron⋅Olivetti, Emanuele⋅Hanson, Jamie L.⋅Avesani, Paolo⋅Garyfallidis, Eleftherios⋅Stanzione, Dan⋅Carson, James⋅Henschel, Robert⋅Hancock, David Y.⋅Stewart, Craig A.⋅Schnyer, David⋅Eke, Damian O.⋅Poldrack, Russell A.⋅George, Nathalie⋅Bridge, Holly⋅Sani, Ilaria⋅Freiwald, Winrich A.⋅Puce, Aina⋅Port, Nicholas L. and Pestilli, Franco
arXiv
 
brainlife.io an open and free cloud coputing platform. The University of Connecticut at Storrs
 
Development of human hippocampal subfield microstructure and relation to associative inference
 
ezBIDS_tutorial_data. figshare
 
Understanding white matter. The University of Connecticut Health Center
2022
A community-driven development of the brain imaging data standard (BIDS) to describe macroscopic brain connections. Open Science Framework
 
A Taxonomy of the Brain’s White Matter: Twenty-One Major Tracts for the 21st Century.
DN, Bullock⋅EA, Hayday⋅MD, Grier⋅W, Tang⋅F, Pestilli and SR, Heilbronner
Cerebral cortex (New York, N.Y. : 1991). | Journal Article
 
brainlife.io an open and free cloud coputing platform. The International Brain Initiative SfN Satellite Symposium
 
CHIASM, the human brain albinism and achiasma MRI dataset. Open Science Framework
 
Denoising diffusion weighted imaging data using convolutional neural networks
H, Cheng⋅S, Vinci-Booher⋅J, Wang⋅B, Caron⋅Q, Wen⋅S, Newman and F, Pestilli
 
Denoising diffusion weighted imaging data using convolutional neural networks. PLOS ONE
Hu, Cheng⋅Vinci-Booher, Sophia⋅Wang, Jian⋅Caron, Bradley⋅Wen, Qiuting⋅Newman, Sharlene and Pestilli, Franco
. | Journal Article
 
Development of white matter tracts between and within the dorsal and ventral streams
Vinci-Booher, S.⋅Caron, B.⋅Bullock, D.⋅James, K. and Pestilli, F.
Brain Structure and Function. | Journal Article
 
Functionally defined white matter of the macaque monkey brain reveals a dorso-ventral attention network - Data - Open Science Framework
 
GPU-accelerated connectome discovery at scale
Sreenivasan, Varsha⋅Kumar, Sawan⋅Pestilli, Franco⋅Talukdar, Partha and Sridharan, Devarajan
Nature Computational Science, vol. 2, pp. 298–306. | Journal Article
 
Mapping the Microstructure and Striae of the Human Olfactory Tract with Diffusion MRI
Echevarria-Cooper, Shiloh L.⋅Echevarria-Cooper, Shiloh L⋅Echevarria-Cooper, Shiloh L⋅Echevarria-Cooper, Shiloh L⋅Zhou, Guangyu⋅Zhou, Guangyu⋅Zhou, Guangyu⋅Zhou, Guangyu⋅Zelano, Christina⋅Zelano, Christina⋅Zelano, Christina⋅Zelano, Christina⋅Pestilli, Franco⋅Pestilli, Franco⋅Pestilli, Franco⋅Pestilli, Franco⋅Parrish, Todd B.⋅Parrish, Todd B⋅Parrish, Todd B⋅Parrish, Todd B⋅Kahnt, Thorsten⋅Kahnt, Thorsten⋅Kahnt, Thorsten and Kahnt, Thorsten
The Journal of Neuroscience, pp. JN–RM–1552–21. | Journal Article
 
Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging
AI, Renton⋅AI, Renton⋅Renton, Angela I.⋅Renton, A.I.⋅Renton, Angela I.⋅TT, Dao⋅TT, Dao⋅Dao, Thanh Thuy⋅Dao, Thanh Thuy⋅Dao, T.T.⋅Abbott, David F.⋅DF, Abbott⋅Abbott, David F.⋅Johnstone, T.⋅DF, Abbott⋅Civier, O.⋅Amos, Toluwani J⋅Amos, Toluwani J⋅S, Bollmann⋅TJ, Amos⋅Bollmann, Saskia⋅Sullivan, R.P.⋅S, Bollmann⋅MEJ, Campbell⋅Bollmann, Saskia⋅Botting, Andy⋅J, Chang⋅Botting, Andy⋅White, D.J.⋅A, Botting⋅MEJ, Campbell⋅Campbell, Megan E. J.⋅Lyons, P.⋅TG, Close⋅Campbell, Megan E. J.⋅Chang, Jeryn⋅J, Chang⋅K, Eckstein⋅Chang, Jeryn⋅Slade, B.M.⋅Civier, Oren⋅Civier, Oren⋅Abbott, D.F.⋅GF, Egan⋅O, Civier⋅Close, Thomas G.⋅Amos, T.J.⋅TG, Close⋅S, Evas⋅Close, Thomas G.⋅KG, Garner⋅Eckstein, Korbinian⋅Eckstein, Korbinian⋅K, Eckstein⋅Bollmann, S.⋅Botting, A.⋅GF, Egan⋅Egan, Gary F.⋅MI, Garrido⋅Egan, Gary F.⋅S, Evas⋅Campbell, M.E.J.⋅AJ, Hannan⋅Evas, Stefanie⋅Evas, Stefanie⋅Flandin, Guillaume⋅Flandin, Guillaume⋅R, Huber⋅G, Flandin⋅Chang, J.⋅Garner, Kelly G.⋅S, Bollmann⋅Garner, Kelly G.⋅Close, T.G.⋅S, Bollmann⋅Garrido, Marta I.⋅Eckstein, K.⋅Garrido, Marta I.⋅Ghosh, Satrajit S⋅Ghosh, Satrajit S⋅Egan, G.F.⋅Evas, S.⋅Grignard, Martin⋅Grignard, Martin⋅Flandin, G.⋅Hannan, Anthony J.⋅Hannan, Anthony J.⋅Huber, Renzo⋅Huber, Renzo⋅Garner, K.G.⋅Hughes, Matthew E⋅Hughes, Matthew E⋅Garrido, M.I.⋅Johnstone, Tom⋅Ghosh, S.S.⋅Johnstone, Tom⋅Grignard, M.⋅Kaczmarzyk, Jakub R.⋅Kaczmarzyk, Jakub R.⋅Kasper, Lars⋅Kasper, Lars⋅Hannan, A.J.⋅Kuhlmann, Levin⋅Kuhlmann, Levin⋅Huber, R.⋅Kaczmarzyk, J.R.⋅Lou, Kexin⋅Lou, Kexin⋅Kasper, L.⋅Lyons, Paris⋅Lyons, Paris⋅Mantilla-Ramos, Yorguin-Jose⋅Kuhlmann, L.⋅Mantilla-Ramos, Yorguin-Jose⋅Lou, K.⋅Mattingley, Jason B.⋅Mattingley, Jason B.⋅Mantilla-Ramos, Y.-J.⋅Morris, Jo⋅Morris, Jo⋅Mattingley, J.B.⋅Narayanan, Akshaiy⋅Narayanan, Akshaiy⋅Pestilli, Franco⋅Morris, J.⋅Pestilli, Franco⋅Puce, Aina⋅Puce, Aina⋅Narayanan, A.⋅Ribeiro, Fernanda L.⋅Ribeiro, Fernanda L.⋅Pestilli, F.⋅Puce, A.⋅Rogasch, Nigel C.⋅Rogasch, Nigel C.⋅Rorden, Chris⋅Rorden, Chris⋅Ribeiro, F.L.⋅Schira, Mark⋅Rogasch, N.C.⋅Schira, Mark⋅Shaw, Thomas B.⋅Rorden, C.⋅Shaw, Thomas B.⋅Schira, M.⋅Slade, Benjamin M⋅Slade, Benjamin M⋅Shaw, T.B.⋅Spitz, Gershon⋅Spitz, Gershon⋅Sowman, P.F.⋅Stewart, Ashley⋅Stewart, Ashley⋅Sullivan, Ryan P.⋅Spitz, G.⋅Sullivan, Ryan P.⋅White, David J.⋅White, David J.⋅Stewart, A.⋅Ye, Xincheng⋅Ye, Xincheng⋅Ye, X.⋅Zhu, Judy D.⋅Zhu, J.D.⋅Zhu, Judy D.⋅Narayanan, Aswin⋅Narayanan, Aswin⋅Hughes, M.E.⋅Bollmann, Steffen⋅Narayanan, A.⋅Bollmann, Steffen and Bollmann, S.
 
Open and reproducible neuroimaging: from study inception to publication.
G, Niso⋅Niso, Guiomar⋅Botvinik-Nezer, Rotem⋅R, Botvinik-Nezer⋅Appelhoff, Stefan⋅S, Appelhoff⋅A, De La Vega⋅De La Vega, Alejandro⋅Vega, Alejandro De La⋅Esteban, Oscar⋅O, Esteban⋅Etzel, Joset A⋅JA, Etzel⋅Finc, Karolina⋅K, Finc⋅M, Ganz⋅Ganz, Melanie⋅Gau, Rémi⋅YO, Halchenko⋅Halchenko, Yaroslav O⋅P, Herholz⋅Herholz, Peer⋅Karakuzu, Agah⋅DB, Keator⋅Keator, David B⋅JW, Rieger⋅Markiewicz, Christopher J⋅Maumet, Camille⋅Pernet, Cyril R⋅Pestilli, Franco⋅Queder, Nazek⋅Schmitt, Tina⋅Sójka, Weronika⋅Wagner, Adina S⋅Whitaker, Kirstie J and Rieger, Jochem W
NeuroImage, pp. 119623, September 10, 2022. | Journal Article
 
OpenPaymentsMejiaetal2019. Open Science Framework
 
sparsegl: An R Package for Estimating Sparse Group Lasso
Liang, Xiaoxuan⋅Cohen, Aaron⋅Heinsfeld, Anibal Solón⋅Pestilli, Franco and McDonald, Daniel J.
arXiv
 
Visual Information Routes in the Posterior Dorsal and Ventral Face Network Studied with Intracranial Neurophysiology and White Matter Tract Endpoints.
Babo-Rebelo, M⋅M, Babo-Rebelo⋅Puce, A⋅A, Puce⋅D, Bullock⋅Bullock, D⋅L, Hugueville⋅Hugueville, L⋅F, Pestilli⋅C, Adam⋅K, Lehongre⋅V, Lambrecq⋅V, Dinkelacker and N, George
Cerebral cortex (New York, N.Y. : 1991). | Journal Article