52 Publications (Page 2 of 3)
2020
On the Use of Marker Strategy Design to Detect Predictive Marker Effect in Cancer Immunotherapy and Targeted Therapy
Han, Yan⋅Han, Yan⋅Yuan, Ying⋅Yuan, Ying⋅Cao, Sha⋅Cao, Sha⋅Li, Muyi⋅Li, Muyi⋅Zang, Yong and Zang, Yong
Statistics in Biosciences, vol. 12, pp. 180–195. | Journal Article
 
QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data.
J, Xie⋅Xie, Juan⋅Xie, Juan⋅A, Ma⋅Ma, Anjun⋅Ma, Anjun⋅Zhang, Yu⋅Zhang, Yu⋅Y, Zhang⋅Liu, Bingqiang⋅B, Liu⋅Liu, Bingqiang⋅Cao, Sha⋅S, Cao⋅Cao, Sha⋅C, Wang⋅Wang, Cankun⋅Wang, Cankun⋅J, Xu⋅Xu, Jennifer⋅Xu, Jennifer⋅C, Zhang⋅Zhang, Chi⋅Zhang, Chi⋅Ma, Qin⋅Ma, Qin and Q, Ma
Bioinformatics (Oxford, England). | Journal Article
 
TSNP: A two-stage nonparametric phase I/II clinical trial design for immunotherapy.
Y, Han⋅H, Liu⋅S, Cao⋅C, Zhang and Y, Zang
Pharmaceutical statistics. | Journal Article
 
Upregulation of lipid metabolism genes in the breast prior to cancer diagnosis.
Marino, Natascia⋅N, Marino⋅Marino, Natascia⋅Marino, Natascia⋅German, Rana⋅German, Rana⋅German, Rana⋅R, German⋅X, Rao⋅Rao, Xi⋅Rao, Xi⋅Rao, Xi⋅E, Simpson⋅Simpson, Ed⋅Simpson, Ed⋅Simpson, Ed⋅Liu, Sheng⋅Liu, Sheng⋅S, Liu⋅Liu, Sheng⋅Wan, Jun⋅J, Wan⋅Wan, Jun⋅Wan, Jun⋅Liu, Yunlong⋅Y, Liu⋅Liu, Yunlong⋅Liu, Yunlong⋅Sandusky, George⋅Sandusky, George⋅G, Sandusky⋅Sandusky, George⋅Jacobsen, Max⋅Jacobsen, Max⋅Jacobsen, Max⋅M, Jacobsen⋅Stoval, Miranda⋅Stoval, Miranda⋅Stoval, Miranda⋅M, Stoval⋅Cao, Sha⋅S, Cao⋅Cao, Sha⋅Cao, Sha⋅Storniolo, Anna Maria V⋅Storniolo, Anna Maria V⋅Storniolo, Anna M and AMV, Storniolo
NPJ breast cancer. | Journal Article
2019
A Bayesian adaptive marker-stratified design for molecularly targeted agents with customized hierarchical modeling.
Zang, Yong⋅Y, Zang⋅B, Guo⋅Guo, Beibei⋅Han, Yan⋅Y, Han⋅S, Cao⋅Cao, Sha⋅Zhang, Chi and C, Zhang
Statistics in medicine. | Journal Article
 
LTMG: a novel statistical modeling of transcriptional expression states in single-cell RNA-Seq data.
C, Wan⋅Wan, Changlin⋅Wan, Changlin⋅Wan, Changlin⋅Chang, Wennan⋅Chang, Wennan⋅Chang, Wennan⋅W, Chang⋅Zhang, Yu⋅Y, Zhang⋅Zhang, Yu⋅Zhang, Yu⋅Shah, Fenil⋅Shah, Fenil⋅Shah, Fenil⋅F, Shah⋅X, Lu⋅Lu, Xiaoyu⋅Lu, Xiaoyu⋅Lu, Xiaoyu⋅Zang, Yong⋅Y, Zang⋅Zang, Yong⋅Zang, Yong⋅Zhang, Anru⋅Zhang, Anru⋅Zhang, Anru⋅A, Zhang⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅S, Cao⋅Fishel, Melissa L⋅Fishel, Melissa L⋅ML, Fishel⋅Fishel, Melissa L⋅Ma, Qin⋅Ma, Qin⋅Q, Ma⋅Ma, Qin⋅C, Zhang⋅Zhang, Chi⋅Zhang, Chi and Zhang, Chi
Nucleic acids research. | Journal Article
 
Lysine-Specific Demethylase 1 Mediates AKT Activity and Promotes Epithelial-to-Mesenchymal Transition in PIK3CA-Mutant Colorectal Cancer.
SA, Miller⋅SA, Miller⋅RA, Policastro⋅RA, Policastro⋅SS, Savant⋅SS, Savant⋅S, Sriramkumar⋅S, Sriramkumar⋅N, Ding⋅N, Ding⋅X, Lu⋅X, Lu⋅HP, Mohammad⋅HP, Mohammad⋅S, Cao⋅S, Cao⋅JH, Kalin⋅JH, Kalin⋅PA, Cole⋅PA, Cole⋅GE, Zentner⋅GE, Zentner⋅HM, O’Hagan and HM, O’Hagan
Molecular cancer research : MCR. | Journal Article
 
M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data.
Y, Zhang⋅Zhang, Yu⋅Zhang, Yu⋅C, Wan⋅Wan, Changlin⋅Wan, Changlin⋅Wang, Pengcheng⋅Wang, Pengcheng⋅P, Wang⋅Chang, Wennan⋅W, Chang⋅Chang, Wennan⋅Huo, Yan⋅Y, Huo⋅Huo, Yan⋅J, Chen⋅Chen, Jian⋅Chen, Jian⋅Ma, Qin⋅Q, Ma⋅Ma, Qin⋅Cao, Sha⋅Cao, Sha⋅S, Cao⋅C, Zhang⋅Zhang, Chi and Zhang, Chi
BMC bioinformatics. | Journal Article
 
Robust tests for gene–environment interaction in case-control and case-only designs
Zang, Yong⋅Fung, Wing Kam⋅Cao, Sha⋅Ng, Hon Keung Tony and Zhang, Chi
Computational Statistics & Data Analysis, vol. 129, pp. 79–92. | Journal Article
 
Statistical multiscale mapping of IDH1, MGMT, and microvascular proliferation in human brain tumors from multiparametric MR and spatially-registered core biopsy.
Parker, Jason G⋅JG, Parker⋅Parker, Jason G⋅Parker, Jason G⋅Diller, Emily E⋅Diller, Emily E⋅Diller, Emily E⋅EE, Diller⋅S, Cao⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Nelson, Jeremy T⋅JT, Nelson⋅Nelson, Jeremy T⋅Nelson, Jeremy T⋅K, Yeom⋅Yeom, Kristen⋅Yeom, Kristen⋅Yeom, Kristen⋅Ho, Chang⋅Chang, Ho⋅Ho, Chang⋅C, Ho⋅Lober, Robert⋅Lober, Robert⋅R, Lober and Lober, Robert
Scientific reports. | Journal Article
 
Warburg Effects in Cancer and Normal Proliferating Cells: Two Tales of the Same Name.
Sun, Huiyan⋅H, Sun⋅Sun, Huiyan⋅L, Chen⋅Chen, Liang⋅Chen, Liang⋅Cao, Sha⋅Cao, Sha⋅S, Cao⋅Y, Liang⋅Liang, Yanchun⋅Liang, Yanchun⋅Xu, Ying⋅Xu, Ying and Y, Xu
Genomics, proteomics & bioinformatics. | Journal Article
2018
Fenton reactions drive nucleotide and ATP syntheses in cancer.
H, Sun⋅C, Zhang⋅S, Cao⋅T, Sheng⋅N, Dong and Y, Xu
Journal of molecular cell biology. | Journal Article
 
MRHCA: a nonparametric statistics based method for hub and co-expression module identification in large gene co-expression network
Zhang, Yu⋅Zhang, Yu⋅Cao, Sha⋅Cao, Sha⋅Zhao, Jing⋅Zhao, Jing⋅Alsaihati, Burair⋅Alsaihati, Burair⋅Ma, Qin⋅Ma, Qin⋅Zhang, Chi and Zhang, Chi
Quantitative Biology, vol. 6, pp. 40–55. | Journal Article
2017
A Novel Unsupervised Algorithm for Biological Process-based Analysis on Cancer
Song, Tianci⋅Song, Tianci⋅Cao, Sha⋅Cao, Sha⋅Tao, Sheng⋅Tao, Sheng⋅Liang, Sen⋅Liang, Sen⋅Du, Wei⋅Du, Wei⋅Liang, Yanchun and Liang, Yanchun
Scientific Reports, vol. 7. | Journal Article
 
Competition between DNA Methylation, Nucleotide Synthesis, and Antioxidation in Cancer versus Normal Tissues.
Cao, Sha⋅S, Cao⋅Zhu, Xiwen⋅X, Zhu⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅C, Zhang⋅Qian, Hong⋅Qian, Hong⋅H, Qian⋅Qian, Hong⋅Schuttler, Heinz-Bernd⋅HB, Schuttler⋅Heinz-Bernd, Schuttler⋅Heinz-Bernd, Schuttler⋅J, Gong⋅Gong, Jianping⋅Xu, Ying⋅Y, Xu⋅Xu, Ying and Xu, Ying
Cancer research. | Journal Article
 
Systematic analyses of glutamine and glutamate metabolisms across different cancer types
Tian, Yuan⋅Tian, Yuan⋅Tian, Yuan⋅Du, Wei⋅Du, Wei⋅Du, Wei⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Wu, Yue⋅Wu, Yue⋅Wu, Yue⋅Dong, Ning⋅Dong, Ning⋅Dong, Ning⋅Wang, Yan⋅Wang, Yan⋅Wang, Yan⋅Xu, Ying⋅Xu, Ying and Xu, Ying
Chinese Journal of Cancer, vol. 36. | Journal Article
 
The method for breast cancer grade prediction and pathway analysis based on improved multiple kernel learning
Song, Tianci⋅Song, Tianci⋅Wang, Yan⋅Wang, Yan⋅Du, Wei⋅Du, Wei⋅Cao, Sha⋅Cao, Sha⋅Tian, Yuan⋅Tian, Yuan⋅Liang, Yanchun and Liang, Yanchun
Journal of Bioinformatics and Computational Biology, vol. 15, pp. 1650037. | Journal Article
 
Transcription regulation by DNA methylation under stressful conditions in human cancer
Cao, Sha⋅Zhou, Yi⋅Wu, Yue⋅Song, Tianci⋅Alsaihati, Burair and Xu, Ying
Quantitative Biology, vol. 5, (no. 4), pp. 337, 20171200. | Journal Article
2016
Amino acid transporter SLC6A14 is a novel and effective drug target for pancreatic cancer
Coothankandaswamy, V⋅Coothankandaswamy, V⋅Cao, S⋅Cao, S⋅Xu, Y⋅Xu, Y⋅Prasad, P D⋅Prasad, P D⋅Singh, P K⋅Singh, P K⋅Reynolds, C P⋅Reynolds, C P⋅Yang, S⋅Yang, S⋅Ogura, J⋅Ogura, J⋅Ganapathy, V⋅Ganapathy, V⋅Bhutia, Y D and Bhutia, Y D
British Journal of Pharmacology, vol. 173, pp. 3292–3306. | Journal Article
 
-Book chapter-
Zhang, Chi⋅Sheng, Tao⋅Cao, Sha⋅Issa-Boube, Samira⋅Tang, Tongyu⋅Zhu, Xiwen⋅Dong, Ning⋅Du, Wei and Xu, Ying
In Autophagy in Cancer Cells vs. Cancer Tissues: Two Different Stories. (pp. 17–38). Springer International Publishing. 2016
2015
Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum
Chou, Wen-Chi⋅Chou, Wen-Chi⋅Chou, Wen-Chi⋅Ma, Qin⋅Ma, Qin⋅Ma, Qin⋅Yang, Shihui⋅Yang, Shihui⋅Yang, Shihui⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Klingeman, Dawn M.⋅Klingeman, Dawn M⋅Klingeman, Dawn M⋅Brown, Steven D⋅Brown, Steven D⋅Brown, Steven D.⋅Xu, Ying⋅Xu, Ying and Xu, Ying
Nucleic Acids Research, vol. 43, pp. e67–e67. | Journal Article
 
Cancer may be a pathway to cell survival under persistent hypoxia and elevated ROS: A model for solid-cancer initiation and early development
Zhang, Chi⋅Zhang, Chi⋅Cao, Sha⋅Cao, Sha⋅Toole, Bryan P⋅Toole, Bryan P.⋅Xu, Ying and Xu, Ying
International Journal of Cancer, vol. 136, pp. 2001–2011. | Journal Article
 
Elucidation of drivers of high-level production of lactates throughout a cancer development
Zhang, Chi⋅Zhang, Chi⋅Liu, Chao⋅Liu, Chao⋅Cao, Sha⋅Cao, Sha⋅Xu, Ying and Xu, Ying
Journal of Molecular Cell Biology, vol. 7, pp. 267–279. | Journal Article
 
Somatic mutations may not be the primary drivers of cancer formation
Cao, Sha⋅Cao, Sha⋅Zhang, Chi⋅Zhang, Chi⋅Xu, Ying and Xu, Ying
International Journal of Cancer, vol. 137, pp. 2762–2765. | Journal Article
 
Stresses drive a cancer’s initiation, progression and metastasis: Critical comments on the book "Cancer Bioinformatics"
Liu, Chao⋅Liu, Chao⋅Zhang, Chi⋅Zhang, Chi⋅Su, Jing⋅Su, Jing⋅Zhang, Dongsheng⋅Zhang, Dongsheng⋅Cao, Sha and Cao, Sha
Journal of Bioinformatics and Computational Biology, vol. 13, pp. 1571002. | Journal Article