193 Publications (Page 4 of 8)
2010
Predicting loop-helix tertiary structural contacts in RNA pseudoknots.
Cao, Song⋅Giedroc, David P and Chen, Shi Jie
RNA (New York, N.Y.), vol. 16, (no. 3), pp. 538-52, 2010/Mar. | Journal Article
 
The CRR1 Nutritional Copper Sensor in Chlamydomonas Contains Two Distinct Metal-Responsive Domains
Sommer, Frederik⋅Kropat, Janette⋅Malasarn, Davin⋅Grossoehme, Nicholas E⋅Chen, Xiaohua⋅Giedroc, David P and Merchant, Sabeeha
Plant Cell, vol. 22, (no. 12), pp. 4098-4113, 2010. | Journal Article
 
The CRR1 Nutritional Copper Sensor in Chlamydomonas Contains Two Distinct Metal-Responsive Domains (C)(W)(OA)
Sommer, Frederik⋅Kropat, Janette⋅Malasarn, Davin⋅Grossoehme, Nicholas E⋅Chen, Xiaohua⋅Giedroc, David P and Merchant, Sabeeha S
Plant Cell, vol. 22, (no. 12), pp. 4098-4113A, Dec 2010. | Journal Article
 
The Metalloregulatory Zinc Site in Streptococcus pneumoniae AdcR, a Zinc-activated MarR Family Repressor
Reyes-Caballero, Hermes⋅Guerra, Alfredo J⋅Jacobsen, Faith E⋅Kazmierczak, Krystyna M⋅Cowart, Darin⋅Koppolu, Uma M⋅Scott, Robert A⋅Winkler, Malcolm E and Giedroc, David P
Journal of Molecular Biology, vol. 403, (no. 2), pp. 197-216, 2010. | Journal Article
2009
Coordination Chemistry of Bacterial Metal Transport and Sensing
Ma, Zhen⋅Jacobsen, Faith E and Giedroc, David P
Chemical Reviews, vol. 109, (no. 10), pp. 4644-4681, Oct 2009. | Journal Article
 
Coronavirus N protein N-terminal domain (NTD) specifically binds the transcriptional regulatory sequence (TRS) and melts TRS-cTRS RNA duplexes.
Grossoehme, Nicholas E⋅Li, Lichun⋅Keane, Sarah C⋅Liu, Pinghua⋅Dann Iii, Charles E⋅Dann, Charles E⋅Leibowitz, Julian K and Giedroc, David P
Journal of molecular biology, vol. 394, (no. 3), pp. 544-57, 2009/Dec/4. | Journal Article
 
Energetics of allosteric negative coupling in the zinc sensor S. aureus CzrA.
Grossoehme, Nicholas E and Giedroc, David P
Journal of the American Chemical Society, vol. 131, (no. 49), pp. 17860-70, 2009/Dec/16. | Journal Article
 
Erratum to “Simulating RNA Folding Kinetics on Approximated Energy Landscapes” [J. Mol. Biol. 381 (2008) 1055–1067]
Tang, Xinyu⋅Thomas, Shawna⋅Tapia, Lydia⋅Giedroc, David P and Amato, Nancy M
Journal of Molecular Biology, vol. 387, (no. 2), pp. 522, 2009. | Journal Article
 
Frameshifting RNA pseudoknots: Structure and mechanism
Giedroc, David P and Cornish, Peter V
Virus Research, vol. 139, (no. 2), pp. 193-208, 2009. | Journal Article
 
Hydrogen peroxide sensing in Bacillus subtilis: it is all about the (metallo)regulator
Giedroc, David P
Molecular microbiology., vol. 73, (no. 1), pp. 1-4, 2009. | Journal Article
 
Molecular insights into the metal selectivity of the copper(I)-sensing repressor CsoR from Bacillus subtilis.
Ma, Zhen⋅Cowart, Darin M⋅Scott, Robert A and Giedroc, David P
Biochemistry, vol. 48, (no. 15), pp. 3325-34, 2009/Apr/21. | Journal Article
 
Mouse hepatitis virus stem-loop 2 adopts a uYNMG(U)a-like tetraloop structure that is highly functionally tolerant of base substitutions.
Liu, Pinghua⋅Li, Lichun⋅Keane, Sarah C⋅Yang, Dong⋅Leibowitz, Julian K and Giedroc, David P
Journal of virology, vol. 83, (no. 23), pp. 12084-93, 2009/Dec. | Journal Article
 
Solution structure of a paradigm ArsR family zinc sensor in the DNA-bound state
Arunkumar, Alphonse I⋅Campanello, Gregory C and Giedroc, David P
Proceedings of the National Academy of Sciences of the United States of America, vol. 106, (no. 43), Oct 27, 2009. | Journal Article
 
Spectroscopic studies of the AppA BLUF domain from Rhodobacter sphaeroides: addressing movement of tryptophan 104 in the signaling state.
Dragnea, Vladimira⋅Dragnea, Vladimira⋅Arunkumar, Alphonse I⋅Arunkumar, Alphonse I⋅Yuan, Hua⋅Yuan, Hua⋅Giedroc, David P⋅Giedroc, David P⋅Bauer, Carl E and Bauer, Carl E
Biochemistry, vol. 48, (no. 42), pp. 9969-79, 2009/Oct/27. | Journal Article
 
Structure of Thermotoga maritima TM0439: implications for the mechanism of bacterial GntR transcription regulators with Zn2+-binding FCD domains.
Zheng, Meiying⋅Cooper, David R⋅Grossoehme, Nickolas E⋅Yu, Minmin⋅Hung, Li W⋅Cieslik, Marcin⋅Derewenda, Urszula⋅Lesley, Scott A⋅Wilson, Ian A⋅Giedroc, David P and Derewenda, Zygmunt S
Acta crystallographica. Section D, Biological crystallography, vol. 65, (no. Pt 4), pp. 356-65, 2009/Apr. | Journal Article
 
Unnatural amino acid substitution as a probe of the allosteric coupling pathway in a mycobacterial Cu(I) sensor.
Ma, Zhen⋅Cowart, Darin M⋅Ward, Brian P⋅Arnold, Randy J⋅Di Marchi, Richard D⋅Zhang, Limei⋅George, Graham N⋅Scott, Robert A and Giedroc, David P
Journal of the American Chemical Society, vol. 131, (no. 50), pp. 18044-5, 2009/Dec/23. | Journal Article
2008
A Cu(I)-sensing ArsR family metal sensor protein with a relaxed metal selectivity profile.
Liu, Tong⋅Chen, Xiaohua⋅Ma, Zhen⋅Shokes, Jacob⋅Hemmingsen, Lars Bo S⋅Scott, Robert A and Giedroc, David P
Biochemistry, vol. 47, (no. 40), pp. 10564-75, 2008/Oct/7. | Journal Article
 
A [Cu.sup.I]-sensing ArsR family metal sensor protein with a relaxed metal selectivity profile
Liu, Tong⋅Chen, Xiaohua⋅Ma, Zhen⋅Shokes, Jacob⋅Hemmingsen, Lars⋅Scott, Robert and Giedroc, David
Biochemistry, vol. 47, (no. 40), pp. 10564, 20081007. | Journal Article
 
Copper sensing function of Drosophila metal-responsive transcription factor-1 is mediated by a tetranuclear Cu(I) cluster
Chen, Xiaohua⋅Hua, Haiqing⋅Balamurugan, Kuppusamy⋅Kong, Xiangming⋅Zhang, Limei⋅George, Graham N⋅Georgiev, Oleg⋅Schaffner, Walter and Giedroc, David P
Nucleic Acids Research, vol. 36, (no. 9), pp. 3128-3138, 2008. | Journal Article
 
Simulating RNA folding kinetics on approximated energy landscapes.
Tang, Xinyu⋅Thomas, Shawna⋅Tapia, Lydia⋅Giedroc, David P and Amato, Nancy M
Journal of molecular biology, vol. 381, (no. 4), pp. 1055-67, 2008/Sep/12. | Journal Article
 
Structural lability in stem-loop 1 drives a 5' UTR-3' UTR interaction in coronavirus replication.
Li, Lichun⋅Kang, Hyojeung⋅Liu, Pinghua⋅Makkinje, Nick⋅Williamson, Shawn T⋅Leibowitz, Julian K and Giedroc, David P
Journal of molecular biology, vol. 377, (no. 3), pp. 790-803, 2008/Mar/28. | Journal Article
2007
A U-turn motif-containing stem-loop in the coronavirus 5' untranslated region plays a functional role in replication
Liu, Pinghua⋅Li, Lichun⋅Millership, Jason J⋅Kang, Hyojeung⋅Leibowitz, Julian K and Giedroc, David P
RNA, vol. 13, (no. 5), pp. 763-780, 2007. | Journal Article
 
CsoR is a novel Mycobacterium tuberculosis copper-sensing transcriptional regulator
Liu, Tong⋅Ramesh, Arati⋅Ma, Zhen⋅Ward, Sarah K⋅Zhang, Limei⋅George, Graham N⋅Talaat, Adel M⋅Sacchettini, James C and Giedroc, David P
Nature Chemical Biology, vol. 3, (no. 1), pp. 60-68, 2007. | Journal Article
 
Metal sensor proteins: nature's metalloregulated allosteric switches.
Giedroc, David P and Arunkumar, Alphonse I
Dalton transactions (Cambridge, England : 2003), (no. 29), pp. 3107-20, 2007/Aug/7. | Journal Article
 
Multiple metal binding domains enhance the Zn(II) selectivity of the divalent metal ion transporter AztA.
Liu, Tong⋅Reyes-Caballero, Hermes⋅Li, Chenxi⋅Scott, Robert A and Giedroc, David P
Biochemistry, vol. 46, (no. 39), pp. 11057-68, 2007/Oct/2. | Journal Article