132 Publications (Page 1 of 6)
2023
Proximal tubule role in albumin homeostasis: controversy, species differences, and the contributions of intravital microscopy. Kidney International
. | Journal Article
2022
3D CentroidNet: Nuclei Centroid Detection With Vector Flow Voting
 
3D Ground Truth Annotations of Nuclei in 3D Microscopy Volumes
 
An Ensemble Learning and Slice Fusion Strategy for Three-Dimensional Nuclei Instance Segmentation
 
DINAVID: A Distributed and Networked Image Analysis System for Volumetric Image Data
 
NISNet3D: Three-Dimensional Nuclear Synthesis and Instance Segmentation for Fluorescence Microscopy Images
2021
Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline.
Ferkowicz, Michael J⋅Winfree, Seth⋅Sabo, Angela R⋅Kamocka, Malgorzata M⋅Khochare, Suraj⋅Barwinska, Daria⋅Eadon, Michael T⋅Cheng, Ying-Hua⋅Phillips, Carrie L⋅Sutton, Timothy A⋅Kelly, Katherine J⋅Dagher, Pierre C⋅El-Achkar, Tarek M⋅Dunn, Kenneth W⋅Knight, Richard⋅Lecker, Stewart⋅Stillman, Isaac⋅Mcmahon, Gearoid⋅Waikar, Sus⋅Weins, Astrid⋅Hacohen, Nir⋅Hoover, Paul⋅Aulisio, Mark⋅Cooperman, Leslie⋅Herlitz, Leal⋅O'toole, John⋅Poggio, Emilio⋅Sedor, John⋅Appelbaum, Paul⋅Barasch, Jonathan⋅Bomback, Andrew⋅D'agati, Vivette⋅Kiryluk, Krzysztof⋅Mehl, Karla⋅Shang, Ning Sunny⋅Weng, Chenhua⋅Barisoni, Laura⋅Alexandrov, Theodore⋅Ashkar, Tarek⋅Barwinska, Daria⋅Dagher, Pierre⋅Dunn, Kenneth⋅Eadon, Michael⋅Ferkowicz, Michael⋅Kelly, Katherine⋅Sutton, Timothy⋅Winfree, Seth⋅Menez, Steven⋅Parikh, Chirag⋅Rosenberg, Avi⋅Villalobos, Pam⋅Slack, Alison⋅Rosas, Sylvia⋅Williams, Mark⋅Azeloglu, Evren⋅He, Cijang John⋅Iyengar, Ravi⋅Parikh, Samir⋅Anderton, Chris⋅Pasa-Tolic, Ljiljana⋅Velickovic, Dusan⋅Oliver, George Holt⋅Ardayfio, Joseph⋅Bebiak, Jack⋅Brown, Keith⋅Campbell, Taneisha⋅Campbell, Catherine⋅Hayashi, Lynda⋅Jefferson, Nichole⋅Koewler, Robert⋅Roberts, Glenda⋅Saul, John⋅Shpigel, Anna⋅Stutzke, Edith Christine⋅Wright, Lorenda⋅Miegs, Leslie⋅Pinkeney, Roy⋅Sealfon, Rachel⋅Troyanskaya, Olga⋅Tuttle, Katherine⋅Goltsev, Yury⋅Lake, Blue⋅Zhang, Kun⋅Dobi, Dejan⋅Joanes, Maria⋅Laszik, Zoltan⋅Nolan, Garry⋅Schroeder, Andrew⋅Balis, Ulysses⋅He, Oliver⋅Hodgin, Jeffrey⋅Kretzler, Matthias⋅Mariani, Laura⋅Menon, Rajasree⋅Otto, Edgar⋅Schaub, Jennifer⋅Steck, Becky⋅Elder, Michele⋅Hall, Daniel⋅Kellum, John⋅Kruth, Mary⋅Murugan, Raghav⋅Palevsky, Paul⋅Randhawa, Parmjeet⋅Rosengart, Matthew⋅Sims-Lucas, Sunny⋅Stefanick, Mary⋅Stull, Stacy⋅Tublin, Mitchell⋅Alpers, Charles⋅Boer, Ian De⋅Fullerton, Malia⋅Himmelfarb, Jonathan⋅Mcclelland, Robyn⋅Mooney, Sean⋅Shankland, Stuart⋅Williams, Kayleen⋅Blank, Kristina⋅Dighe, Ashveena⋅Carson, Jonas⋅Dowd, Frederick⋅Drager, Zach⋅Sharma, Kumar⋅Zhang, Guanshi⋅Kermani, Asra⋅Lee, Simon⋅Lu, Christopher⋅Miller, Tyler⋅Moe, Orson⋅Park, Harold⋅Sambandam, Kamalanathan⋅Sanchez, Francisco⋅Torrealba, Jose⋅Robert, Toto⋅Vazquez, Miguel⋅Wang, Nancy⋅Gaut, Joe⋅Jain, Sanjay⋅Vijayan, Anitha⋅Luciano, Randy⋅Moledina, Dennis⋅Ugochukwu, Ugwuowo and Wilson, Francis Perry
(pp. 661-676). May 2021
 
Molecular characterization of the human kidney interstitium in health and disease
Barwinska, Daria⋅El-Achkar, Tarek M⋅Ferreira, Ricardo Melo⋅Syed, Farooq⋅Cheng, Ying-Hua⋅Winfree, Seth⋅Ferkowicz, Michael J⋅Hato, Takashi⋅Collins, Kimberly S⋅Dunn, Kenneth W⋅Kelly, Katherine J⋅Sutton, Timothy A⋅Rovin, Brad H⋅Parikh, Samir V⋅Phillips, Carrie L⋅Dagher, Pierre C and Eadon, Michael T
Science Advances. | Journal Article
2020
A computational model of liver tissue damage and repair.
Adhyapok, P.⋅Adhyapok, Priyom⋅Adhyapok, P.⋅Fu, X.⋅Fu, Xiao⋅Fu, X.⋅Sluka, James P⋅Sluka, J.P.⋅Sluka, J.P.⋅Clendenon, S.G.⋅Clendenon, S.G.⋅Clendenon, Sherry G⋅Sluka, Victoria D⋅Sluka, V.D.⋅Sluka, V.D.⋅Wang, Z.⋅Wang, Zemin⋅Wang, Z.⋅Dunn, Kenneth⋅Dunn, K.⋅Dunn, K.⋅Klaunig, J.E.⋅Klaunig, J.E.⋅Klaunig, James E⋅Glazier, J.A.⋅Glazier, J.A. and Glazier, James A
PloS one, vol. 15, (no. 12), pp. e0243451, 2020. | Journal Article
 
Mitochondrial depolarization and repolarization in the early stages of acetaminophen hepatotoxicity in mice
Dunn, K.W.⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Martinez, M.M.⋅Martinez, Michelle M⋅Martinez, Michelle M⋅Wang, Zemin⋅Wang, Z.⋅Wang, Zemin⋅Mang, H.E.⋅Mang, Henry E⋅Mang, Henry E⋅Clendenon, Sherry G⋅Clendenon, S.G.⋅Clendenon, Sherry G⋅Sluka, J.P.⋅Sluka, James P⋅Sluka, James P⋅Glazier, James A⋅Glazier, James A⋅Glazier, J.A.⋅Klaunig, James E⋅Klaunig, James E and Klaunig, J.E.
Toxicology, vol. 439, pp. 152464, June 2020. | Journal Article
 
PIE-FLIM Measurements of Two Different FRET-Based Biosensor Activities in the Same Living Cells
Reissaus, Christopher A⋅Reissaus, Christopher A⋅Reissaus, Christopher A⋅Day, Kathleen H⋅Day, Kathleen H⋅Day, Kathleen H⋅Mirmira, Raghavendra G⋅Mirmira, Raghavendra G⋅Mirmira, Raghavendra G⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Pavalko, Fredrick M⋅Pavalko, Fredrick M⋅Pavalko, Fredrick M⋅Day, Richard N⋅Day, Richard N and Day, Richard N
Biophysical Journal, vol. 118, (no. 8), pp. 1829, 2020-04-21. | Journal Article
2019
Automatic segmentation of intravital fluorescence microscopy images by K-means clustering of FLIM phasors
Zhang, Yide⋅Zhang, Yide⋅Zhang, Yide⋅Hato, Takashi⋅Hato, Takashi⋅Hato, Takashi⋅Dagher, Pierre C⋅Dagher, Pierre C⋅Dagher, Pierre C⋅Nichols, Evan L⋅Nichols, Evan L⋅Nichols, Evan L⋅Smith, Cody J⋅Smith, Cody J⋅Smith, Cody J⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Howard, Scott S⋅Howard, Scott S and Howard, Scott S
Optics Letters, vol. 44, (no. 16), Aug 15, 2019. | Journal Article
 
A Versatile, Portable Intravital Microscopy Platform for Studying Beta-cell Biology In Vivo
Reissaus, Christopher A⋅Reissaus, Christopher A⋅Reissaus, Christopher A⋅Piñeros, Annie R⋅Piñeros, Annie R⋅Piñeros, Annie R⋅Twigg, Ashley N⋅Twigg, Ashley N⋅Twigg, Ashley N⋅Orr, Kara S⋅Orr, Kara S⋅Orr, Kara S⋅Conteh, Abass M⋅Conteh, Abass M⋅Conteh, Abass M⋅Martinez, Michelle M⋅Martinez, Michelle M⋅Martinez, Michelle M⋅Kamocka, Malgorzata M⋅Kamocka, Malgorzata M⋅Kamocka, Malgorzata M⋅Day, Richard N⋅Day, Richard N⋅Day, Richard N⋅Tersey, Sarah A⋅Tersey, Sarah A⋅Tersey, Sarah A⋅Mirmira, Raghavendra G⋅Mirmira, Raghavendra G⋅Mirmira, Raghavendra G⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Linnemann, Amelia K⋅Linnemann, Amelia K and Linnemann, Amelia K
Scientific reports, vol. 9, (no. 1), pp. 11, 2019-06-11. | Journal Article
 
Center-Extraction-Based Three Dimensional Nuclei Instance Segmentation of Fluorescence Microscopy Images
Ho, David Joon⋅Ho, David Joon⋅Ho, D.J.⋅Han, Shuo⋅Han, Shuo⋅Han, S.⋅Fu, Chichen⋅Fu, Chichen⋅Fu, C.⋅Salama, Paul⋅Salama, Paul⋅Salama, P.⋅Dunn, Kenneth W⋅Dunn, K.W.⋅Dunn, Kenneth W⋅Delp, Edward J⋅Delp, E.J. and Delp, Edward J
2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI), pp. 4, 2019-May. | Journal Article
 
DeepSynth: Three-dimensional nuclear segmentation of biological images using neural networks trained with synthetic data
Dunn, Kenneth W⋅Dunn, Kenneth W⋅Dunn, K.W.⋅Fu, C.⋅Fu, Chichen⋅Fu, Chichen⋅Ho, David Joon⋅Ho, David Joon⋅Ho, D.J.⋅Lee, Soonam⋅Lee, Soonam⋅Lee, S.⋅Han, Shuo⋅Han, S.⋅Han, Shuo⋅Salama, Paul⋅Salama, Paul⋅Salama, P.⋅Delp, E.J.⋅Delp, Edward J and Delp, Edward J
Scientific reports, vol. 9, (no. 1), pp. 15, 2019-Dec-04. | Journal Article
 
Longitudinal Intravital Imaging of Biosensor-labeled In Situ Islet Beta Cells
Reissaus, Christopher A⋅Twigg, Ashley N⋅Orr, Kara S⋅Conteh, Abass M⋅Martinez, Michelle M⋅Kamocka, Malgorzata M⋅Day, Richard N⋅Tersey, Sarah A⋅Dunn, Kenneth W⋅Mirmira, Raghavendra G and Linnemann, Amelia K
Cold Spring Harbor Laboratory
 
Quantitative Kinetic Models from Intravital Microscopy: A Case Study Using Hepatic Transport
Tavakoli, Meysam⋅Tsekouras, Konstantinos⋅Day, Richard⋅Dunn, Kenneth W and Pressé, Steve
The journal of physical chemistry. B, vol. 123, (no. 34), pp. 7312, 2019-08-29. | Journal Article
 
Spatial Temporal Analysis of Fieldwise Flow in Microvasculature
Clendenon, Sherry G⋅Clendenon, Sherry G⋅Clendenon, Sherry G⋅Clendenon, Sherry G⋅Clendenon, Sherry G⋅Fu, Xiao⋅Fu, Xiao⋅Fu, Xiao⋅Fu, Xiao⋅Fu, Xiao⋅Von Hoene, Robert A⋅Von Hoene, Robert A⋅Von Hoene, Robert A⋅Von Hoene, Robert A⋅Von Hoene, Robert A⋅Clendenon, Jeffrey L⋅Clendenon, Jeffrey L⋅Clendenon, Jeffrey L⋅Clendenon, Jeffrey L⋅Clendenon, Jeffrey L⋅Sluka, James P⋅Sluka, James P⋅Sluka, James P⋅Sluka, James P⋅Sluka, James P⋅Winfree, Seth⋅Winfree, Seth⋅Winfree, Seth⋅Winfree, Seth⋅Winfree, Seth⋅Mang, Henry⋅Mang, Henry⋅Mang, Henry⋅Mang, Henry⋅Mang, Henry⋅Martinez, Michelle⋅Martinez, Michelle⋅Martinez, Michelle⋅Martinez, Michelle⋅Martinez, Michelle⋅Filson, Adele⋅Filson, Adele⋅Filson, Adele⋅Filson, Adele⋅Filson, Adele⋅Klaunig, James E⋅Klaunig, James E⋅Klaunig, James E⋅Klaunig, James E⋅Klaunig, James E⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Dunn, Kenneth W and Dunn, Kenneth W
Journal of Visualized Experiments, (no. 153), 11-2019. | Journal Article
 
THE ROLE OF OSTEOMACS IN REGULATING STEM CELL FUNCTION AND THE HEMATOPOIETIC NICHE
Mohamad, Safa⋅Mohamad, Safa⋅Mohamad, Safa⋅Mohamad, Safa⋅Ghosh, Joydeep⋅Ghosh, Joydeep⋅Ghosh, Joydeep⋅Ghosh, Joydeep⋅Gunwan, Andrea⋅Gunwan, Andrea⋅Gunwan, Andrea⋅Gunwan, Andrea⋅Kamocka, Malgorzata⋅Kamocka, Malgorzata⋅Kamocka, Malgorzata⋅Kamocka, Malgorzata⋅Blosser, Rachel⋅Blosser, Rachel⋅Blosser, Rachel⋅Blosser, Rachel⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Mohammad, Khalid⋅Mohammad, Khalid⋅Mohammad, Khalid⋅Mohammad, Khalid⋅Dunn, Kenneth⋅Dunn, Kenneth⋅Dunn, Kenneth⋅Dunn, Kenneth⋅Kacena, Melissa⋅Kacena, Melissa⋅Kacena, Melissa⋅Kacena, Melissa⋅Srour, Edward⋅Srour, Edward⋅Srour, Edward and Srour, Edward
Experimental Hematology, vol. 76, pp. S79, August 2019. | Journal Article
 
Three Dimensional Blind Image Deconvolution for Fluorescence Microscopy using Generative Adversarial Networks
Lee, Soonam⋅Lee, S.⋅Lee, Soonam⋅Han, Shuo⋅Han, Shuo⋅Han, S.⋅Salama, Paul⋅Salama, Paul⋅Salama, P.⋅Dunn, Kenneth W⋅Dunn, K.W.⋅Dunn, Kenneth W⋅Delp, Edward J⋅Delp, E.J. and Delp, Edward J
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 542, 2019-April. | Journal Article
2018
Abstract 16102: Calcium/Calmodulin-Dependent Protein Kinase II Phosphorylation of KCNQ1 S484 Disrupts the Interaction Between KCNQ1 and KCNE1 Subunits
Shugg, Tyler⋅Shugg, Tyler⋅Shugg, Tyler⋅Shugg, Tyler⋅Dunn, Kenneth⋅Dunn, Kenneth⋅Dunn, Kenneth⋅Dunn, Kenneth⋅Cummins, Theodore⋅Cummins, Theodore⋅Cummins, Theodore⋅Cummins, Theodore⋅Hudmon, Andy⋅Hudmon, Andy⋅Hudmon, Andy⋅Hudmon, Andy⋅Overholser, Brian⋅Overholser, Brian⋅Overholser, Brian and Overholser, Brian
Circulation, vol. 138, (no. Suppl_1 Suppl 1), pp. A16102, 2018-November-6. | Journal Article
 
A simple automated method for continuous fieldwise measurement of microvascular hemodynamics.
Clendenon, Jeffrey L⋅Clendenon, Sherry G⋅Clendenon, Sherry G⋅Fu, Xiao⋅Fu, Xiao⋅Von Hoene, Robert A⋅Von Hoene, Robert A⋅Clendenon, Jeffrey L⋅Sluka, James P⋅Sluka, James P⋅Winfree, Seth⋅Winfree, Seth⋅Mang, Henry⋅Mang, Henry⋅Martinez, Michelle⋅Martinez, Michelle⋅Filson, Adele J⋅Filson, Adele J⋅Klaunig, James E⋅Klaunig, James E⋅Glazier, James A⋅Glazier, James A⋅Dunn, Kenneth W and Dunn, Kenneth W
Microvascular research, vol. 123, pp. 7-13, November 28, 2018. | Journal Article
 
Intravital Multiphoton Microscopy with Fluorescent Bile Salts in Rats as an In Vivo Biomarker for Hepatobiliary Transport Inhibition
Ryan, Jennifer⋅Morgan, Ryan E⋅Chen, Yuan⋅Volak, Laurie P⋅Dunn, Robert T and Dunn, Kenneth W
Drug Metabolism and Disposition, vol. 46, (no. 5), May 1, 2018. | Journal Article
 
Kinetic Analysis of Vasculogenesis Quantifies Dynamics of Vasculogenesis and Angiogenesis In Vitro.
Varberg, Kaela M⋅Varberg, Kaela M⋅Winfree, Seth⋅Winfree, Seth⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Haneline, Laura S and Haneline, Laura S
Journal of visualized experiments : JoVE, (no. 131), January 31, 2018. | Journal Article
 
Live-Animal Imaging of Renal Function by Multiphoton Microscopy.
Dunn, Kenneth W⋅Sutton, Timothy A and Sandoval, Ruben M
Current protocols in cytometry, vol. 83, pp. 12.9.1-12.9.25, January 18, 2018. | Journal Article