131 Publications (Page 1 of 6)
2022
3D CentroidNet: Nuclei Centroid Detection With Vector Flow Voting
 
3D Ground Truth Annotations of Nuclei in 3D Microscopy Volumes
 
An Ensemble Learning and Slice Fusion Strategy for Three-Dimensional Nuclei Instance Segmentation
 
DINAVID: A Distributed and Networked Image Analysis System for Volumetric Image Data
 
NISNet3D: Three-Dimensional Nuclear Synthesis and Instance Segmentation for Fluorescence Microscopy Images
2021
Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline.
Ferkowicz, Michael JWinfree, SethSabo, Angela RKamocka, Malgorzata MKhochare, SurajBarwinska, DariaEadon, Michael TCheng, Ying-HuaPhillips, Carrie LSutton, Timothy AKelly, Katherine JDagher, Pierre CEl-Achkar, Tarek MDunn, Kenneth WKnight, RichardLecker, StewartStillman, IsaacMcmahon, GearoidWaikar, SusWeins, AstridHacohen, NirHoover, PaulAulisio, MarkCooperman, LeslieHerlitz, LealO'toole, JohnPoggio, EmilioSedor, JohnAppelbaum, PaulBarasch, JonathanBomback, AndrewD'agati, VivetteKiryluk, KrzysztofMehl, KarlaShang, Ning SunnyWeng, ChenhuaBarisoni, LauraAlexandrov, TheodoreAshkar, TarekBarwinska, DariaDagher, PierreDunn, KennethEadon, MichaelFerkowicz, MichaelKelly, KatherineSutton, TimothyWinfree, SethMenez, StevenParikh, ChiragRosenberg, AviVillalobos, PamSlack, AlisonRosas, SylviaWilliams, MarkAzeloglu, EvrenHe, Cijang JohnIyengar, RaviParikh, SamirAnderton, ChrisPasa-Tolic, LjiljanaVelickovic, DusanOliver, George HoltArdayfio, JosephBebiak, JackBrown, KeithCampbell, TaneishaCampbell, CatherineHayashi, LyndaJefferson, NicholeKoewler, RobertRoberts, GlendaSaul, JohnShpigel, AnnaStutzke, Edith ChristineWright, LorendaMiegs, LesliePinkeney, RoySealfon, RachelTroyanskaya, OlgaTuttle, KatherineGoltsev, YuryLake, BlueZhang, KunDobi, DejanJoanes, MariaLaszik, ZoltanNolan, GarrySchroeder, AndrewBalis, UlyssesHe, OliverHodgin, JeffreyKretzler, MatthiasMariani, LauraMenon, RajasreeOtto, EdgarSchaub, JenniferSteck, BeckyElder, MicheleHall, DanielKellum, JohnKruth, MaryMurugan, RaghavPalevsky, PaulRandhawa, ParmjeetRosengart, MatthewSims-Lucas, SunnyStefanick, MaryStull, StacyTublin, MitchellAlpers, CharlesBoer, Ian DeFullerton, MaliaHimmelfarb, JonathanMcclelland, RobynMooney, SeanShankland, StuartWilliams, KayleenBlank, KristinaDighe, AshveenaCarson, JonasDowd, FrederickDrager, ZachSharma, KumarZhang, GuanshiKermani, AsraLee, SimonLu, ChristopherMiller, TylerMoe, OrsonPark, HaroldSambandam, KamalanathanSanchez, FranciscoTorrealba, JoseRobert, TotoVazquez, MiguelWang, NancyGaut, JoeJain, SanjayVijayan, AnithaLuciano, RandyMoledina, DennisUgochukwu, Ugwuowo and Wilson, Francis Perry
(pp. 661-676). May 2021
 
Molecular characterization of the human kidney interstitium in health and disease
Barwinska, DariaEl-Achkar, Tarek MFerreira, Ricardo MeloSyed, FarooqCheng, Ying-HuaWinfree, SethFerkowicz, Michael JHato, TakashiCollins, Kimberly SDunn, Kenneth WKelly, Katherine JSutton, Timothy ARovin, Brad HParikh, Samir VPhillips, Carrie LDagher, Pierre C and Eadon, Michael T
Science Advances. | Journal Article
2020
A computational model of liver tissue damage and repair.
Adhyapok, PriyomAdhyapok, P.Fu, XiaoFu, X.Sluka, James PSluka, J.P.Clendenon, Sherry GClendenon, S.G.Sluka, Victoria DSluka, V.D.Wang, Z.Wang, ZeminDunn, K.Dunn, KennethKlaunig, James EKlaunig, J.E.Glazier, James A and Glazier, J.A.
PloS one, vol. 15, (no. 12), pp. e0243451, 2020. | Journal Article
 
Mitochondrial depolarization and repolarization in the early stages of acetaminophen hepatotoxicity in mice
Dunn, Kenneth WDunn, Kenneth WMartinez, Michelle MMartinez, Michelle MWang, ZeminWang, ZeminMang, Henry EMang, Henry EClendenon, Sherry GClendenon, Sherry GSluka, James PSluka, James PGlazier, James AGlazier, James AKlaunig, James E and Klaunig, James E
Toxicology, vol. 439, pp. 152464, June 2020. | Journal Article
 
PIE-FLIM Measurements of Two Different FRET-Based Biosensor Activities in the Same Living Cells
Reissaus, Christopher AReissaus, Christopher AReissaus, Christopher ADay, Kathleen HDay, Kathleen HDay, Kathleen HMirmira, Raghavendra GMirmira, Raghavendra GMirmira, Raghavendra GDunn, Kenneth WDunn, Kenneth WDunn, Kenneth WPavalko, Fredrick MPavalko, Fredrick MPavalko, Fredrick MDay, Richard NDay, Richard N and Day, Richard N
Biophysical Journal, vol. 118, (no. 8), pp. 1829, 2020-04-21. | Journal Article
2019
Automatic segmentation of intravital fluorescence microscopy images by K-means clustering of FLIM phasors
Zhang, YideZhang, YideZhang, YideHato, TakashiHato, TakashiHato, TakashiDagher, Pierre CDagher, Pierre CDagher, Pierre CNichols, Evan LNichols, Evan LNichols, Evan LSmith, Cody JSmith, Cody JSmith, Cody JDunn, Kenneth WDunn, Kenneth WDunn, Kenneth WHoward, Scott SHoward, Scott S and Howard, Scott S
Optics Letters, vol. 44, (no. 16), Aug 15, 2019. | Journal Article
 
A Versatile, Portable Intravital Microscopy Platform for Studying Beta-cell Biology In Vivo
Reissaus, Christopher AReissaus, Christopher AReissaus, Christopher APiñeros, Annie RPiñeros, Annie RPiñeros, Annie RTwigg, Ashley NTwigg, Ashley NTwigg, Ashley NOrr, Kara SOrr, Kara SOrr, Kara SConteh, Abass MConteh, Abass MConteh, Abass MMartinez, Michelle MMartinez, Michelle MMartinez, Michelle MKamocka, Malgorzata MKamocka, Malgorzata MKamocka, Malgorzata MDay, Richard NDay, Richard NDay, Richard NTersey, Sarah ATersey, Sarah ATersey, Sarah AMirmira, Raghavendra GMirmira, Raghavendra GMirmira, Raghavendra GDunn, Kenneth WDunn, Kenneth WDunn, Kenneth WLinnemann, Amelia KLinnemann, Amelia K and Linnemann, Amelia K
Scientific reports, vol. 9, (no. 1), pp. 11, 2019-06-11. | Journal Article
 
Center-Extraction-Based Three Dimensional Nuclei Instance Segmentation of Fluorescence Microscopy Images
Ho, David JoonHo, David JoonHo, D.J.Han, ShuoHan, ShuoHan, S.Fu, ChichenFu, ChichenFu, C.Salama, PaulSalama, PaulSalama, P.Dunn, Kenneth WDunn, Kenneth WDunn, K.W.Delp, Edward JDelp, E.J. and Delp, Edward J
2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI), pp. 4, 2019-May. | Journal Article
 
DeepSynth: Three-dimensional nuclear segmentation of biological images using neural networks trained with synthetic data
Dunn, Kenneth WDunn, K.W.Dunn, Kenneth WFu, C.Fu, ChichenFu, ChichenHo, D.J.Ho, David JoonHo, David JoonLee, SoonamLee, SoonamLee, S.Han, S.Han, ShuoHan, ShuoSalama, PaulSalama, PaulSalama, P.Delp, Edward JDelp, E.J. and Delp, Edward J
Scientific reports, vol. 9, (no. 1), pp. 15, 2019-Dec-04. | Journal Article
 
Longitudinal Intravital Imaging of Biosensor-labeled In Situ Islet Beta Cells
Reissaus, Christopher ATwigg, Ashley NOrr, Kara SConteh, Abass MMartinez, Michelle MKamocka, Malgorzata MDay, Richard NTersey, Sarah ADunn, Kenneth WMirmira, Raghavendra G and Linnemann, Amelia K
Cold Spring Harbor Laboratory
 
Quantitative Kinetic Models from Intravital Microscopy: A Case Study Using Hepatic Transport
Tavakoli, MeysamTsekouras, KonstantinosDay, RichardDunn, Kenneth W and Pressé, Steve
The journal of physical chemistry. B, vol. 123, (no. 34), pp. 7312, 2019-08-29. | Journal Article
 
Spatial Temporal Analysis of Fieldwise Flow in Microvasculature
Clendenon, Sherry GClendenon, Sherry GClendenon, Sherry GClendenon, Sherry GClendenon, Sherry GFu, XiaoFu, XiaoFu, XiaoFu, XiaoFu, XiaoVon Hoene, Robert AVon Hoene, Robert AVon Hoene, Robert AVon Hoene, Robert AVon Hoene, Robert AClendenon, Jeffrey LClendenon, Jeffrey LClendenon, Jeffrey LClendenon, Jeffrey LClendenon, Jeffrey LSluka, James PSluka, James PSluka, James PSluka, James PSluka, James PWinfree, SethWinfree, SethWinfree, SethWinfree, SethWinfree, SethMang, HenryMang, HenryMang, HenryMang, HenryMang, HenryMartinez, MichelleMartinez, MichelleMartinez, MichelleMartinez, MichelleMartinez, MichelleFilson, AdeleFilson, AdeleFilson, AdeleFilson, AdeleFilson, AdeleKlaunig, James EKlaunig, James EKlaunig, James EKlaunig, James EKlaunig, James EGlazier, James AGlazier, James AGlazier, James AGlazier, James AGlazier, James ADunn, Kenneth WDunn, Kenneth WDunn, Kenneth WDunn, Kenneth W and Dunn, Kenneth W
Journal of Visualized Experiments, (no. 153), 11-2019. | Journal Article
 
THE ROLE OF OSTEOMACS IN REGULATING STEM CELL FUNCTION AND THE HEMATOPOIETIC NICHE
Mohamad, SafaMohamad, SafaMohamad, SafaMohamad, SafaGhosh, JoydeepGhosh, JoydeepGhosh, JoydeepGhosh, JoydeepGunwan, AndreaGunwan, AndreaGunwan, AndreaGunwan, AndreaKamocka, MalgorzataKamocka, MalgorzataKamocka, MalgorzataKamocka, MalgorzataBlosser, RachelBlosser, RachelBlosser, RachelBlosser, RachelZhang, ChiZhang, ChiZhang, ChiZhang, ChiMohammad, KhalidMohammad, KhalidMohammad, KhalidMohammad, KhalidDunn, KennethDunn, KennethDunn, KennethDunn, KennethKacena, MelissaKacena, MelissaKacena, MelissaKacena, MelissaSrour, EdwardSrour, EdwardSrour, Edward and Srour, Edward
Experimental Hematology, vol. 76, pp. S79, August 2019. | Journal Article
 
Three Dimensional Blind Image Deconvolution for Fluorescence Microscopy using Generative Adversarial Networks
Lee, SoonamLee, S.Lee, SoonamHan, ShuoHan, ShuoHan, S.Salama, PaulSalama, PaulSalama, P.Dunn, Kenneth WDunn, K.W.Dunn, Kenneth WDelp, Edward JDelp, Edward J and Delp, E.J.
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 542, 2019-April. | Journal Article
2018
Abstract 16102: Calcium/Calmodulin-Dependent Protein Kinase II Phosphorylation of KCNQ1 S484 Disrupts the Interaction Between KCNQ1 and KCNE1 Subunits
Shugg, TylerShugg, TylerDunn, KennethDunn, KennethCummins, TheodoreCummins, TheodoreHudmon, AndyHudmon, AndyOverholser, Brian and Overholser, Brian
Circulation, vol. 138, (no. Suppl_1 Suppl 1), pp. A16102, 2018-November-6. | Journal Article
 
A simple automated method for continuous fieldwise measurement of microvascular hemodynamics.
Clendenon, Sherry GClendenon, Sherry GClendenon, Jeffrey LFu, XiaoFu, XiaoVon Hoene, Robert AVon Hoene, Robert AClendenon, Jeffrey LSluka, James PSluka, James PWinfree, SethWinfree, SethMang, HenryMang, HenryMartinez, MichelleMartinez, MichelleFilson, Adele JFilson, Adele JKlaunig, James EKlaunig, James EGlazier, James AGlazier, James ADunn, Kenneth W and Dunn, Kenneth W
Microvascular research, vol. 123, pp. 7-13, November 28, 2018. | Journal Article
 
Intravital Multiphoton Microscopy with Fluorescent Bile Salts in Rats as an In Vivo Biomarker for Hepatobiliary Transport Inhibition
Ryan, JenniferMorgan, Ryan EChen, YuanVolak, Laurie PDunn, Robert T and Dunn, Kenneth W
Drug Metabolism and Disposition, vol. 46, (no. 5), May 1, 2018. | Journal Article
 
Kinetic Analysis of Vasculogenesis Quantifies Dynamics of Vasculogenesis and Angiogenesis In Vitro.
Varberg, Kaela MVarberg, Kaela MWinfree, SethWinfree, SethDunn, Kenneth WDunn, Kenneth WHaneline, Laura S and Haneline, Laura S
Journal of visualized experiments : JoVE, (no. 131), January 31, 2018. | Journal Article
 
Live-Animal Imaging of Renal Function by Multiphoton Microscopy.
Dunn, Kenneth WSutton, Timothy A and Sandoval, Ruben M
Current protocols in cytometry, vol. 83, pp. 12.9.1-12.9.25, January 18, 2018. | Journal Article
 
Modeling of xenobiotic transport and metabolism in virtual hepatic lobule models.
Fu, XiaoFu, XiaoSluka, James PSluka, James PClendenon, Sherry GClendenon, Sherry GDunn, Kenneth WDunn, Kenneth WWang, ZeminWang, ZeminKlaunig, James EKlaunig, James EGlazier, James A and Glazier, James A
PloS one, vol. 13, (no. 9), pp. e0198060, 2018. | Journal Article