52 Publications (Page 2 of 3)
2017
Pan-cancer analysis of frequent DNA co-methylation patterns reveals consistent epigenetic landscape changes in multiple cancers
Zhang, Jie⋅Zhang, Jie⋅Huang, Kun and Huang, Kun
BMC Genomics, vol. 18, pp. 1-14, 2017. | Journal Article
 
Precise inhibitory microcircuit assembly of developmentally related neocortical interneurons in clusters
Zhang, Xin-Jun⋅Zhang, Xin-jun⋅Li, Zhizhong⋅Li, Zhizhong⋅Han, Zhi⋅Han, Zhi⋅Sultan, Khadeejah T⋅Sultan, Khadeejah T⋅Huang, Kun⋅Huang, Kun⋅Shi, Song-hai and Shi, Song-Hai
Nature Communications, vol. 8, pp. 16091, Jul 2017. | Journal Article
 
Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks
Kaewprag, Pacharmon⋅Newton, Cheryl⋅Vermillion, Brenda⋅Huang, Kun and Machiraju, Raghu
BMC Medical Informatics and Decision Making , vol. 17, 2017. | Journal Article
2016
Clonally Related GABAergic Interneurons Do Not Randomly Disperse but Frequently Form Local Clusters in the Forebrain
Sultan, Khadeejah T⋅Sultan, Khadeejah T⋅Han, Zhi⋅Han, Zhi⋅Zhang, Xin-Jun⋅Zhang, Xin-Jun⋅Xianyu, Anjin⋅Xianyu, Anjin⋅Li, Zhizhong⋅Li, Zhizhong⋅Huang, Kun⋅Huang, Kun⋅Shi, Song-Hai and Shi, Song-Hai
Neuron, vol. 92, (no. 1), pp. 31-44, Oct 5, 2016. | Journal Article
 
Intelligent biology and medicine in 2015: advancing interdisciplinary education, collaboration, and data science.
Huang, Kun⋅Liu, Yunlong⋅Huang, Yufei⋅Li, Lang⋅Cooper, Lee⋅Ruan, Jianhua and Zhao, Zhongming
(pp. 524). August 22, 2016
 
Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes
Wang, Jie⋅Wang, Jie⋅Wang, Jie⋅Xia, Shuli⋅Xia, Shuli⋅Xia, Shuli⋅Arand, Brian⋅Arand, Brian⋅Arand, Brian⋅Zhu, Heng⋅Zhu, Heng⋅Zhu, Heng⋅Machiraju, Raghu⋅Machiraju, Raghu⋅Machiraju, Raghu⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Ji, Hongkai⋅Ji, Hongkai⋅Ji, Hongkai⋅Qian, Jiang⋅Qian, Jiang and Qian, Jiang
PLoS Computational Biology, vol. 12, (no. 4), Apr 2016. | Journal Article
 
Transcriptome regulation and chromatin occupancy by E2F3 and MYC in mice
Tang, Xing⋅Tang, Xing⋅Liu, Huayang⋅Liu, Huayang⋅Srivastava, Arunima⋅Srivastava, Arunima⋅Pécot, Thierry⋅Pécot, Thierry⋅Chen, Zhong⋅Chen, Zhong⋅Wang, Qianben⋅Wang, Qianben⋅Huang, Kun⋅Huang, Kun⋅Sáenz-Robles, Maria Teresa⋅Sáenz-robles, Maria⋅Sáenz-robles, Maria T⋅Cantalupo, Paul⋅Cantalupo, Paul⋅Pipas, James⋅Pipas, James⋅Leone, Gustavo and Leone, Gustavo
Scientific Data, vol. 3, pp. 160008, Feb 2016. | Journal Article
 
Visceral Adipose MicroRNA 223 Is Upregulated in Human and Murine Obesity and Modulates the Inflammatory Phenotype of Macrophages
Deiuliis, Jeffrey A⋅Deiuliis, Jeffrey A⋅Deiuliis, Jeffrey A⋅Syed, Rafay⋅Duggineni, Dheeraj⋅Duggineni, Dheeraj⋅Duggineni, Dheeraj⋅Rutsky, Jessica⋅Rutsky, Jessica⋅Rutsky, Jessica⋅Rengasamy, Palanivel⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Needleman, Bradley⋅Needleman, Bradley⋅Needleman, Bradley⋅Mikami, Dean⋅Mikami, Dean⋅Mikami, Dean⋅Perry, Kyle⋅Perry, Kyle⋅Perry, Kyle⋅Hazey, Jeffrey⋅Hazey, Jeffrey⋅Hazey, Jeffrey⋅Rajagopalan, Sanjay⋅Rajagopalan, Sanjay and Rajagopalan, Sanjay
PLoS One, vol. 11, (no. 11), Nov 2016. | Journal Article
2015
Redeployment of Myc and E2f1-3 drives Rb-deficient cell cycles
Liu, Huayang⋅Liu, Huayang⋅Liu, Huayang⋅Tang, Xing⋅Tang, Xing⋅Tang, Xing⋅Srivastava, Arunima⋅Srivastava, Arunima⋅Srivastava, Arunima⋅Pécot, Thierry⋅Pécot, Thierry⋅Pécot, Thierry⋅Daniel, Piotr⋅Daniel, Piotr⋅Daniel, Piotr⋅Hemmelgarn, Benjamin⋅Hemmelgarn, Benjamin⋅Hemmelgarn, Benjamin⋅Reyes, Stephan⋅Reyes, Stephan⋅Reyes, Stephan⋅Fackler, Nicholas⋅Fackler, Nicholas⋅Fackler, Nicholas⋅Bajwa, Amneet⋅Bajwa, Amneet⋅Bajwa, Amneet⋅Kladney, Raleigh⋅Kladney, Raleigh⋅Kladney, Raleigh⋅Koivisto, Christopher⋅Koivisto, Christopher⋅Koivisto, Christopher⋅Chen, Zhong⋅Chen, Zhong⋅Chen, Zhong⋅Wang, Qianben⋅Wang, Qianben⋅Wang, Qianben⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Machiraju, Raghu⋅Machiraju, Raghu⋅Machiraju, Raghu⋅Sáenz-robles, Maria teresa⋅Sáenz-Robles, Maria Teresa⋅Sáenz-robles, Maria teresa⋅Cantalupo, Paul⋅Cantalupo, Paul⋅Cantalupo, Paul⋅Pipas, James M⋅Pipas, James M⋅Pipas, James M⋅Leone, Gustavo⋅Leone, Gustavo and Leone, Gustavo
Nature Cell Biology, vol. 17, (no. 8), pp. 1036-1048, Aug 2015. | Journal Article
2014
A Module of Human Peripheral Blood Mononuclear Cell Transcriptional Network Containing Primitive and Differentiation Markers Is Related to Specific Cardiovascular Health Variables
Moldovan, Leni⋅Moldovan, Leni⋅Moldovan, Leni⋅Anghelina, Mirela⋅Anghelina, Mirela⋅Anghelina, Mirela⋅Kantor, Taylor⋅Kantor, Taylor⋅Kantor, Taylor⋅Jones, Desiree⋅Jones, Desiree⋅Jones, Desiree⋅Ramadan, Enass⋅Ramadan, Enass⋅Ramadan, Enass⋅Xiang, Yang⋅Xiang, Yang⋅Yang, Xiang⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Kolipaka, Arunark⋅Kolipaka, Arunark⋅Kolipaka, Arunark⋅Malarkey, William⋅Malarkey, William⋅Malarkey, William⋅Ghasemzadeh, Nima⋅Ghasemzadeh, Nima⋅Ghasemzadeh, Nima⋅Mohler, Peter J⋅Mohler, Peter J⋅Mohler, Peter J⋅Quyyumi, Arshed⋅Quyyumi, Arshed⋅Quyyumi, Arshed⋅Moldovan, Nicanor I⋅Moldovan, Nicanor I and Moldovan, Nicanor I
PLoS One, vol. 9, (no. 4), Apr 2014. | Journal Article
 
Enabling Online Studies of Conceptual Relationships Between Medical Terms: Developing an Efficient Web Platform
Albin, Aaron⋅Ji, Xiaonan⋅Borlawsky, Tara B⋅Ye, Zhan⋅Lin, Simon⋅⋅Huang, Kun and Yang, Xiang
JMIR Medical Informatics, vol. 2, (no. 2), Jul-Dec 2014. | Journal Article
 
Normalized lmQCM: An Algorithm for Detecting Weak Quasi-Cliques in Weighted Graph with Applications in Gene Co-Expression Module Discovery in Cancers
Zhang, Jie⋅Zhang, Jie⋅Huang, Kun and Huang, Kun
Cancer Informatics, pp. 137-146, 2014. | Journal Article
 
Regulation of 53BP1 Protein Stability by RNF8 and RNF168 Is Important for Efficient DNA Double-Strand Break Repair
Hu, Yiheng⋅Hu, Yiheng⋅Wang, Chao⋅Wang, Chao⋅Huang, Kun⋅Huang, Kun⋅Xia, Fen⋅Xia, Fen⋅Parvin, Jeffrey D⋅Parvin, Jeffrey D⋅Mondal, Neelima and Mondal, Neelima
PLoS One, vol. 9, (no. 10), Oct 2014. | Journal Article
2013
Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation
Wang, Junbai⋅Wang, Junbai⋅Lan, Xun⋅Lan, Xun⋅Hsu, Pei-Yin⋅Hsu, Pei-Yin⋅Hsu, Hang-Kai⋅Hsu, Hang-Kai⋅Huang, Kun⋅Huang, Kun⋅Parvin, Jeffrey⋅Parvin, Jeff⋅Huang, Tim H⋅Huang, Tim H-M⋅Jin, Victor X and Jin, Victor
BMC Genomics, vol. 14, 2013. | Journal Article
 
Mining the tissue-tissue gene co-expression network for tumor microenvironment study and biomarker prediction
Xiang, Yang⋅Xiang, Yang⋅Zhang, Jie⋅Zhang, Jie⋅Huang, Kun and Huang, Kun
BMC Genomics, vol. 14, 2013. | Journal Article
 
RENIN-SENSITIVE MICRORNAS CORRELATE WITH PLAQUE PROGRESSION: A SUBSET ANALYSIS FROM THE ALPINE PROSPECTIVE TRIAL
Deiuliis, Jeffrey⋅Mihai, Georgeta⋅Zhang, Jie⋅Varghese, Juliet⋅Maiseyeu, Andrei⋅Simonetti, Orlando⋅Huang, Kun and Rajagopalan, Sanjay
Journal of the American College of Cardiology, vol. 61, (no. 10), pp. E1471, Mar 12, 2013. | Journal Article
2012
A dynamic time order network for time-series gene expression data analysis
Zhang, Pengyue⋅Zhang, Pengyue⋅Mourad, Raphaeel⋅Mourad, Raphaël⋅Xiang, Yang⋅Xiang, Yang⋅Huang, Kun⋅Huang, Kun⋅Huang, Tim⋅Huang, Tim H⋅Nephew, Kenneth⋅Nephew, Ken⋅Liu, Yunlong⋅Liu, Yunlong⋅Li, Lang and Li, Lang
BMC Systems Biology, vol. 6, (no. Suppl 3), pp. S9, 2012. | Journal Article
 
A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data
Han, Zhi⋅Han, Zhi⋅Tian, Lu⋅Tian, Lu⋅Pécot, Thierry⋅Pecot, Thierry⋅Pécot, Thierry⋅Huang, Tim⋅Huang, Tim H⋅Machiraju, Raghu⋅Machiraju, Raghu K⋅Huang, Kun and Huang, Kun
BMC Bioinformatics , vol. 13, (no. Suppl 2), pp. S2, 2012. | Journal Article
 
DFI: gene feature discovery in RNA-seq experiments from multiple sources
Ozer, Hatice G⋅Ozer, Hatice G⋅Parvin, Jeffrey D⋅Parvin, Jeff⋅Huang, Kun and Huang, Kun
BMC Genomics, vol. 13, (no. Suppl 8), 2012. | Journal Article
 
Integrative genome-wide chromatin signature analysis using finite mixture models
Taslim, Cenny⋅Taslim, Cenny⋅Lin, Shili⋅Lin, Shili⋅Huang, Kun⋅Huang, Kun⋅Huang, Tim H and Huang, Tim H
BMC Genomics, vol. 13, (no. Suppl 6), 2012. | Journal Article
 
Predicting glioblastoma prognosis networks using weighted gene co-expression network analysis on TCGA data
Xiang, Yang⋅Xiang, Yang⋅Zhang, Cun-Quan⋅Zhang, Cun Quan⋅Huang, Kun and Huang, Kun
BMC Bioinformatics , vol. 13, (no. Suppl 2), pp. S12, 2012. | Journal Article
 
Preferential electrical coupling regulates neocortical lineage-dependent microcircuit assembly
Yu, Yong-Chun⋅Yu, Yong-Chun⋅He, Shuijin⋅He, Shuijin⋅Chen, She⋅Chen, She⋅Fu, Yinghui⋅Fu, Yinghui⋅Brown, Keith N⋅Brown, Keith N⋅Yao, Xing-Hua⋅Yao, Xing-Hua⋅Ma, Jian⋅Ma, Jian⋅Gao, Kate P⋅Gao, Kate P⋅Sosinsky, Gina E⋅Sosinsky, Gina E⋅Huang, Kun⋅Huang, Kun⋅Shi, Song-Hai and Shi, Song-Hai
Nature, vol. 486, (no. 7401), pp. 113-7, Jun 7, 2012. | Journal Article
 
Redistribution of H3K4me2 on neural tissue specific genes during mouse brain development
Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Parvin, Jeffrey D⋅Parvin, Jeffrey⋅Parvin, Jeffrey⋅Huang, Kun⋅Huang, Kun and Huang, Kun
BMC Genomics, vol. 13, (no. Suppl 8), 2012. | Journal Article
2011
Inflammatory Gene Regulatory Networks in Amnion Cells Following Cytokine Stimulation: Translational Systems Approach to Modeling Human Parturition
Li, Ruth⋅Li, Ruth⋅Li, Ruth⋅Li, Ruth⋅Ackerman, William E⋅Ackerman, William E⋅Ackerman, William E⋅Ackerman, William E⋅Summerfield, Taryn L⋅Summerfield, Taryn L⋅Summerfield, Taryn L⋅Summerfield, Taryn L⋅Yu, Lianbo⋅Yu, Lianbo⋅Yu, Lianbo⋅Yu, Lianbo⋅Gulati, Parul⋅Gulati, Parul⋅Gulati, Parul⋅Gulati, Parul⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Romero, Roberto⋅Romero, Roberto⋅Romero, Roberto⋅Romero, Roberto⋅Kniss, Douglas A⋅Kniss, Douglas A⋅Kniss, Douglas A and Kniss, Douglas A
PLoS One, vol. 6, (no. 6), Jun 2011. | Journal Article
2010
RNA Polymerase II Binding Patterns Reveal Genomic Regions Involved in MicroRNA Gene Regulation
Wang, Guohua⋅Wang, Guohua⋅Wang, Yadong⋅Wang, Yadong⋅Shen, Changyu⋅Shen, Changyu⋅Huang, Yi Wen⋅Yi-wen, Huang⋅Huang, Kun⋅Huang, Kun⋅Huang, Tim H⋅Huang, Tim H⋅Nephew, Kenneth P⋅Nephew, Ken⋅Li, Lang⋅Lang, Li⋅Liu, Yunlong and Liu, Yunlong
PLoS One, vol. 5, (no. 11), Nov 2010. | Journal Article