8 Publications
2022
Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease
Johnson, Travis S⋅Johnson, Travis S⋅Johnson, Travis S⋅Yu, Christina Y⋅Yu, Christina Y⋅Yu, Christina Y⋅Huang, Zhi⋅Huang, Zhi⋅Huang, Zhi⋅Xu, Siwen⋅Xu, Siwen⋅Xu, Siwen⋅Wang, Tongxin⋅Wang, Tongxin⋅Wang, Tongxin⋅Dong, Chuanpeng⋅Dong, Chuanpeng⋅Dong, Chuanpeng⋅Shao, Wei⋅Shao, Wei⋅Shao, Wei⋅Huang, Xiaoqing⋅Huang, Xiaoqing⋅Huang, Xiaoqing⋅Wang, Yijie⋅Wang, Yijie⋅Wang, Yijie⋅Bartlett, Christopher⋅Bartlett, Christopher⋅Bartlett, Christopher⋅Zhang, Yan⋅Zhang, Yan⋅Zhang, Yan⋅Walker, Brian A⋅Walker, Brian A⋅Walker, Brian A⋅Liu, Yunlong⋅Liu, Yunlong⋅Liu, Yunlong⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Zhang, Jie⋅Zhang, Jie and Zhang, Jie
Genome Medicine, vol. 14, pp. 1-23, 2022. | Journal Article
2021
The glutathione peroxidase Gpx4 prevents lipid peroxidation and ferroptosis to sustain Treg cell activation and suppression of antitumor immunity.
Xu, Chengxian⋅Xu, Chengxian⋅Xu, Chengxian⋅Xu, Chengxian⋅Sun, Shaogang⋅Sun, Shaogang⋅Sun, Shaogang⋅Sun, Shaogang⋅Johnson, Travis⋅Johnson, Travis⋅Johnson, Travis⋅Johnson, Travis⋅Qi, Rong⋅Qi, Rong⋅Qi, Rong⋅Qi, Rong⋅Zhang, Siyuan⋅Zhang, Siyuan⋅Zhang, Siyuan⋅Zhang, Siyuan⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Yang, Kai⋅Yang, Kai⋅Yang, Kai and Yang, Kai
Cell reports, vol. 35, (no. 11), pp. 109235, June 15, 2021. | Journal Article
2020
Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations
Huang, Zhi⋅Huang, Zhi⋅Huang, Zhi⋅Z, Huang⋅Huang, Zhi⋅Huang, Zhi⋅Huang, Zhi⋅Huang, Zhi⋅Johnson, Travis S⋅Johnson, Travis S⋅Johnson, Travis S⋅Johnson, Travis S⋅Johnson, Travis S⋅TS, Johnson⋅Johnson, Travis S⋅Johnson, Travis S⋅Han, Zhi⋅Han, Zhi⋅Han, Zhi⋅Han, Zhi⋅Han, Zhi⋅Z, Han⋅Han, Zhi⋅Han, Zhi⋅Helm, Bryan⋅Helm, Bryan⋅Helm, Bryan⋅Helm, Bryan⋅Helm, Bryan⋅B, Helm⋅Helm, Bryan⋅Helm, Bryan⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅Cao, Sha⋅S, Cao⋅Cao, Sha⋅Cao, Sha⋅C, Zhang⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Zhang, Chi⋅Salama, Paul⋅Salama, Paul⋅Salama, Paul⋅Salama, Paul⋅Salama, Paul⋅Salama, Paul⋅P, Salama⋅Salama, Paul⋅Rizkalla, Maher⋅Rizkalla, Maher⋅Rizkalla, Maher⋅M, Rizkalla⋅Rizkalla, Maher⋅Rizkalla, Maher⋅Rizkalla, Maher⋅Rizkalla, Maher⋅Yu, Christina Y⋅Yu, Christina Y⋅Yu, Christina Y⋅Yu, Christina Y⋅CY, Yu⋅Yu, Christina Y⋅Yu, Christina Y⋅Yu, Christina Y⋅Cheng, Jun⋅Cheng, Jun⋅Cheng, Jun⋅J, Cheng⋅Cheng, Jun⋅Cheng, Jun⋅Cheng, Jun⋅Cheng, Jun⋅Xiang, Shunian⋅Xiang, Shunian⋅Xiang, Shunian⋅Xiang, Shunian⋅Xiang, Shunian⋅S, Xiang⋅Xiang, Shunian⋅Xiang, Shunian⋅X, Zhan⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhan, Xiaohui⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅J, Zhang⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Huang, Kun⋅K, Huang⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun and Huang, Kun
BMC Medical Genomics, vol. 13, pp. 1-12, 2020. | Journal Article
 
Pseudogene-gene functional networks are prognostic of patient survival in breast cancer
Smerekanych, Sasha⋅Johnson, Travis S⋅Huang, Kun and Zhang, Yan
BMC Medical Genomics, vol. 13, pp. 1-13, 2020. | Journal Article
 
Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing
Johnson, Travis S⋅Helm, Bryan R⋅Abrams, Zachary B⋅Neidecker, Peter⋅Zhang, Yan⋅Huang, Kun and Zhang, Jie
Scientific Reports (Nature Publisher Group), vol. 10, (no. 1), 2020. | Journal Article
2019
A protocol to evaluate RNA sequencing normalization methods
Abrams, Zachary B⋅Johnson, Travis S⋅Huang, Kun⋅Payne, Philip R and Coombes, Kevin
BMC Bioinformatics , vol. 20(Suppl 24), pp. 1-7, 2019. | Journal Article
 
Topological Methods for Visualization and Analysis of High Dimensional Single-Cell RNA Sequencing Data.
Wang, Tongxin⋅Wang, Tongxin⋅Wang, Tongxin⋅Johnson, Travis⋅Johnson, Travis⋅Johnson, Travis⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Huang, Kun⋅Huang, Kun and Huang, Kun
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, vol. 24, pp. 350-361, 2019. | Journal Article
2017
Functional Virtual Flow Cytometry: A Visual Analytic Approach for Characterizing Single-Cell Gene Expression Patterns
Han, Zhi⋅Han, Zhi⋅Han, Zhi⋅Han, Zhi⋅Johnson, Travis⋅Johnson, Travis⋅Johnson, Travis⋅Johnson, Travis⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Xuan⋅Zhang, Xuan⋅Zhang, Xuan⋅Zhang, Xuan⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun and Huang, Kun
BioMed Research International, vol. 2017, 2017. | Journal Article