168 Publications (Page 2 of 7)
2011
Computer simulations of cell sorting due to differential adhesion.
Zhang, Ying⋅Zhang, Y.⋅Thomas, G.L.⋅Thomas, Gilberto L⋅Swat, Maciej⋅Swat, M.⋅Shirinifard, Abbas⋅Shirinifard, A.⋅Glazier, J.A. and Glazier, James A
PloS one, vol. 6, (no. 10), pp. e24999, 2011. | Journal Article
2010
Bulk elastic properties of chicken embryos during somitogenesis.
Agero, Ubirajara⋅Glazier, James A and Hosek, Michael
Biomedical engineering online, vol. 9, pp. 19, 2010. | Journal Article
 
Coarsening foams robustly reach a self-similar growth regime.
Lambert, Jérôme⋅Mokso, Rajmund⋅Cantat, Isabelle⋅Cloetens, Peter⋅Glazier, James A⋅Graner, François and Delannay, Renaud
Physical review letters, vol. 104, (no. 24), pp. 248304, 2010/Jun/18. | Journal Article
 
Computer Simulation of Cellular Patterning Within the Drosophila Pupal Eye
Larson, David E⋅Larson, David E⋅Johnson, Ruth I⋅Johnson, Ruth I⋅Swat, Maciej⋅Swat, Maciej⋅Cordero, Julia B⋅Cordero, Julia B⋅Glazier, James A⋅Glazier, James A⋅Cagan, Ross L and Cagan, Ross L
PLoS computational biology, vol. 6, (no. 7), pp. e1000841, 2010-Jul-01. | Journal Article
 
Front instabilities and invasiveness of simulated 3D avascular tumors.
Poplawski, Nikodem⋅Shirinifard, Abbas⋅Agero, Ubirajara⋅Gens, J S⋅Swat, Maciej and Glazier, James A
PloS one, vol. 5, (no. 5), pp. e10641, 2010. | Journal Article
 
Microfluidic devices integrating microcavity surface-plasmon-resonance sensors: glucose oxidase binding-activity detection.
Amarie, Dragos⋅Amarie, Dragos⋅Alileche, Abdelkrim⋅Alileche, Abdelkrim⋅Dragnea, Bogdan⋅Dragnea, Bogdan⋅Glazier, James A and Glazier, James A
Analytical chemistry, vol. 82, (no. 1), pp. 343-52, 2010/Jan/1. | Journal Article
 
Modeling gastrulation in the chick embryo: formation of the primitive streak.
Vasiev, Bakhtier N⋅Vasiev, B.⋅Balter, Ariel⋅Balter, A.⋅Chaplain, M.⋅Chaplain, Mark A⋅Glazier, James A⋅Glazier, J.A.⋅Weijer, Cornelis and Weijer, C.J.
PloS one, vol. 5, (no. 5), pp. e10571, 2010. | Journal Article
 
Modeling gastrulation in the chick embryo:formation of the primitive streak
Vasiev, Bakhtier⋅Balter, Ariel⋅Chaplain, Mark⋅Glazier, James and Weijer, Cornelis
2010-05-11. | Journal Article
 
The Role of FGF Gradients in the Regulation of Early Limb Growth
Zhang, Ying⋅Poplawski, Nikodem J and Glazier, James A
Developmental Biology, vol. 344, (no. 1), pp. 444, 2010-08-01. | Journal Article
2009
3D multi-cell simulation of tumor growth and angiogenesis.
Shirinifard, Abbas⋅Gens, J S⋅Zaitlen, Benjamin L⋅Poplawski, Nikodem⋅Swat, Maciej and Glazier, James A
PloS one, vol. 4, (no. 10), pp. e7190, 2009. | Journal Article
 
A threaded Java concurrent implementation of the Monte-Carlo Metropolis Ising model
Castañeda-Marroquín, Carlos⋅de la Puente, Alfonso Ortega⋅Alfonseca, Manuel⋅Glazier, James A and Swat, Maciej
International Work-Conference on the Interplay between Natural and Artificial Computation, vol. 2009, pp. 110, 2009-Jun-01. | Journal Article
 
Front instabilities and invasiveness of simulated avascular tumors.
Poplawski, Nikodem⋅Agero, Ubirajara⋅Gens, J S⋅Swat, Maciej⋅Glazier, James A and Anderson, Alexander R
Bulletin of mathematical biology, vol. 71, (no. 5), pp. 1189-227, 2009/Jul. | Journal Article
 
Multicell simulations of development and disease using the CompuCell3D simulation environment.
Swat, Maciej H⋅Swat, Maciej H⋅Hester, Susan D⋅Hester, Susan D⋅Balter, Ariel I⋅Balter, Ariel I⋅Heiland, Randy W⋅Heiland, Randy W⋅Zaitlen, Benjamin L⋅Zaitlen, Benjamin L⋅Glazier, James A and Glazier, James A
Methods in molecular biology (Clifton, N.J.), vol. 500, pp. 361-428, 2009. | Journal Article
2008
Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth
Merks, Roeland M⋅Perryn, Erica D⋅Shirinifard, Abbas⋅Glazier, James A and Bourne, Philip E
PLoS Computational Biology, vol. 4, (no. 9), pp. e1000163, 2008. | Journal Article
 
Coordinated action of N-CAM, N-cadherin, EphA4, and ephrinB2 translates genetic prepatterns into structure during somitogenesis in chick.
Glazier, James A⋅Zhang, Ying⋅Swat, Maciej⋅Zaitlen, Benjamin and Schnell, Santiago
Current topics in developmental biology, vol. 81, pp. 205-47, 2008. | Journal Article
 
Probing soap-film friction with two-phase foam flow
Balter, Ariel I⋅Glazier, James A and Perry, Rebecca
Philosophical Magazine Letters, vol. 88, (no. 9-10), pp. 691, 9/1/2008. | Journal Article
 
Simulation of single-species bacterial-biofilm growth using the Glazier-Graner-Hogeweg model and the CompuCell3D modeling environment.
Poplawski, Nikodem⋅Shirinifard, Abbas⋅Swat, Maciej and Glazier, James A
Mathematical biosciences and engineering : MBE, vol. 5, (no. 2), pp. 355-88, 2008/Apr. | Journal Article
2007
Adhesion between cells, diffusion of growth factors, and elasticity of the AER produce the paddle shape of the chick limb.
Popławski, Nikodem J⋅Swat, Maciej⋅Gens, J Scott and Glazier, James A
Physica A, vol. 373, pp. 521-532, January 1, 2007. | Journal Article
 
A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis.
Chen, Nan⋅Glazier, James A⋅Izaguirre, Jesús A and Alber, Mark S
Computer physics communications, vol. 176, (no. 11-12), pp. 670-681, June 2007. | Journal Article
 
Compact Microfluidic Structures for Generating Spatial and Temporal Gradients
Amarie, Dragos⋅Glazier, James A and Jacobson, Stephen C
Analytical Chemistry, vol. 79, (no. 24), Dec 15, 2007. | Journal Article
 
Computing an Organism: Cell‐Level Modeling of Development and Disease
Glazier, James Alexander
The FASEB Journal, vol. 21, (no. 5), 2007-04-00. | Journal Article
 
Experimental growth law for bubbles in a moderately "wet" 3D liquid foam.
Lambert, Jérôme⋅Cantat, Isabelle⋅Delannay, Renaud⋅Mokso, Rajmund⋅Cloetens, Peter⋅Glazier, James A and Graner, François
Physical review letters, vol. 99, (no. 5), pp. 058304, 2007/Aug/3. | Journal Article
 
From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development
Cickovski, Trevor⋅Aras, Kedar⋅Alber, Mark S⋅Swat, Maciej⋅Izaguirre, Jesus A⋅Merks, Roeland M⋅Glimm, Tilmann⋅Swat, Maciej⋅Glazier, James A⋅Hentschel, HGeorge E⋅Alber, Mark S⋅Merks, Roeland M H⋅Glazier, James A⋅Glimm, Tilmann⋅Hentschel, H George E⋅Newman, Stuart A⋅Izaguirre, Jesus A and Newman, Stuart A
Computing in Science & Engineering, vol. 9, (no. 4), 2007. | Journal Article
2006
Cell elongation is key to in silico replication of in vitro vasculogenesis and subsequent remodeling.
Merks, Roeland M⋅Brodsky, Sergey V⋅Goligorksy, Michael S⋅Newman, Stuart A and Glazier, James A
Developmental biology, vol. 289, (no. 1), pp. 44-54, 2006/Jan/1. | Journal Article
 
Cell movement during chick primitive streak formation.
Chuai, Manli⋅Chuai, M.⋅Zeng, W.⋅Zeng, Wei⋅Yang, Xuesong⋅Yang, X.⋅Boychenko, Veronika⋅Boychenko, V.⋅Glazier, James A⋅Glazier, J.A.⋅Weijer, C.J. and Weijer, Cornelis
Developmental biology, vol. 296, (no. 1), pp. 137-49, 2006/Aug/1. | Journal Article