168 Publications (Page 1 of 7)
2019
Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation
Fox, Geoffrey⋅Fox, Geoffrey⋅Fox, Geoffrey⋅Fox, Geoffrey⋅Fox, Geoffrey⋅Fox, Geoffrey⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Kadupitiya, JCS⋅Kadupitiya, JCS⋅Kadupitiya, JCS⋅Kadupitiya, JCS⋅Kadupitiya, JCS⋅Kadupitiya, JCS⋅Jadhao, Vikram⋅Jadhao, Vikram⋅Jadhao, Vikram⋅Jadhao, Vikram⋅Jadhao, Vikram⋅Jadhao, Vikram⋅Kim, Minje⋅Kim, Minje⋅Kim, Minje⋅Kim, Minje⋅Kim, Minje⋅Kim, Minje⋅Qiu, Judy⋅Qiu, Judy⋅Qiu, Judy⋅Qiu, Judy⋅Qiu, Judy⋅Qiu, Judy⋅Sluka, James P⋅Sluka, James P⋅Sluka, James P⋅Sluka, James P⋅Sluka, James P⋅Sluka, James P⋅Somogyi, Endre⋅Somogyi, Endre⋅Somogyi, Endre⋅Somogyi, Endre⋅Somogyi, Endre⋅Somogyi, Endre⋅Marathe, Madhav⋅Marathe, Madhav⋅Marathe, Madhav⋅Marathe, Madhav⋅Marathe, Madhav⋅Marathe, Madhav⋅Adiga, Abhijin⋅Adiga, Abhijin⋅Adiga, Abhijin⋅Adiga, Abhijin⋅Adiga, Abhijin⋅Adiga, Abhijin⋅Chen, Jiangzhuo⋅Chen, Jiangzhuo⋅Chen, Jiangzhuo⋅Chen, Jiangzhuo⋅Chen, Jiangzhuo⋅Chen, Jiangzhuo⋅Beckstein, Oliver⋅Beckstein, Oliver⋅Beckstein, Oliver⋅Beckstein, Oliver⋅Beckstein, Oliver⋅Beckstein, Oliver⋅Jha, Shantenu⋅Jha, Shantenu⋅Jha, Shantenu⋅Jha, Shantenu⋅Jha, Shantenu and Jha, Shantenu
2019-02-27. | Journal Article
 
The 2019 mathematical oncology roadmap
Rockne, Russell C⋅Rockne, Russell C⋅Rockne, Russell C⋅Rockne, Russell C⋅Rockne, R.C.⋅Rockne, Russell C⋅Hawkins-Daarud, Andrea⋅Hawkins-Daarud, Andrea⋅Hawkins-Daarud, Andrea⋅Hawkins-Daarud, A.⋅Hawkins-Daarud, Andrea⋅Hawkins-Daarud, Andrea⋅Swanson, K.R.⋅Swanson, Kristin R⋅Swanson, Kristin R⋅Swanson, Kristin R⋅Swanson, Kristin R⋅Swanson, Kristin R⋅Sluka, James P⋅Sluka, James P⋅Sluka, James P⋅Sluka, J.P.⋅Sluka, James P⋅Sluka, James P⋅Glazier, J.A.⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Macklin, Paul⋅Macklin, Paul⋅Macklin, Paul⋅Macklin, Paul⋅Macklin, P.⋅Macklin, Paul⋅Hormuth, David A⋅Hormuth, David A⋅Hormuth, David A⋅Hormuth, David A⋅Hormuth, D.A.⋅Hormuth, David A⋅Jarrett, Angela M⋅Jarrett, Angela M⋅Jarrett, Angela M⋅Jarrett, A.M.⋅Jarrett, Angela M⋅Jarrett, Angela M⋅Lima, Ernesto A B F⋅Lima, E.A.B.F.⋅Lima, Ernesto A B F⋅Lima, Ernesto A B F⋅Lima, Ernesto A B F⋅Lima, Ernesto A B F⋅Tinsley Oden, J⋅Tinsley Oden, J⋅Tinsley Oden, J.⋅Tinsley Oden, J⋅Tinsley Oden, J⋅Tinsley Oden, J⋅Biros, George⋅Biros, George⋅Biros, George⋅Biros, George⋅Biros, George⋅Biros, G.⋅Yankeelov, Thomas E⋅Yankeelov, T.E.⋅Yankeelov, Thomas E⋅Yankeelov, Thomas E⋅Yankeelov, Thomas E⋅Yankeelov, Thomas E⋅Curtius, K.⋅Curtius, Kit⋅Curtius, Kit⋅Curtius, Kit⋅Curtius, Kit⋅Curtius, Kit⋅Al Bakir, Ibrahim⋅Al Bakir, Ibrahim⋅Al Bakir, Ibrahim⋅Al Bakir, Ibrahim⋅Al Bakir, Ibrahim⋅Al Bakir, I.⋅Wodarz, D.⋅Wodarz, Dominik⋅Wodarz, Dominik⋅Wodarz, Dominik⋅Wodarz, Dominik⋅Wodarz, Dominik⋅Komarova, Natalia⋅Komarova, Natalia⋅Komarova, N.⋅Komarova, Natalia⋅Komarova, Natalia⋅Komarova, Natalia⋅Aparicio, Luis⋅Aparicio, L.⋅Aparicio, Luis⋅Aparicio, Luis⋅Aparicio, Luis⋅Aparicio, Luis⋅Bordyuh, Mykola⋅Bordyuh, Mykola⋅Bordyuh, Mykola⋅Bordyuh, M.⋅Bordyuh, Mykola⋅Bordyuh, Mykola⋅Rabadan, Raul⋅Rabadan, Raul⋅Rabadan, Raul⋅Rabadan, R.⋅Rabadan, Raul⋅Rabadan, Raul⋅Finley, Stacey D⋅Finley, Stacey D⋅Finley, S.D.⋅Finley, Stacey D⋅Finley, Stacey D⋅Finley, Stacey D⋅Enderling, Heiko⋅Enderling, H.⋅Enderling, Heiko⋅Enderling, Heiko⋅Enderling, Heiko⋅Enderling, Heiko⋅Caudell, Jimmy⋅Caudell, Jimmy⋅Caudell, Jimmy⋅Caudell, J.⋅Caudell, Jimmy⋅Caudell, Jimmy⋅Moros, E.G.⋅Moros, Eduardo G⋅Moros, Eduardo G⋅Moros, Eduardo G⋅Moros, Eduardo G⋅Moros, Eduardo G⋅Anderson, Alexander R A⋅Anderson, Alexander R A⋅Anderson, Alexander R A⋅Anderson, Alexander R A⋅Anderson, Alexander R A⋅Anderson, A.R.A.⋅Gatenby, Robert A⋅Gatenby, Robert A⋅Gatenby, R.A.⋅Gatenby, Robert A⋅Gatenby, Robert A⋅Gatenby, Robert A⋅Kaznatcheev, Artem⋅Kaznatcheev, Artem⋅Kaznatcheev, A.⋅Kaznatcheev, Artem⋅Kaznatcheev, Artem⋅Kaznatcheev, Artem⋅Jeavons, P.⋅Jeavons, Peter⋅Jeavons, Peter⋅Jeavons, Peter⋅Jeavons, Peter⋅Jeavons, Peter⋅Krishnan, Nikhil⋅Krishnan, Nikhil⋅Krishnan, Nikhil⋅Krishnan, N.⋅Krishnan, Nikhil⋅Krishnan, Nikhil⋅Pelesko, Julia⋅Pelesko, Julia⋅Pelesko, Julia⋅Pelesko, Julia⋅Pelesko, J.⋅Pelesko, Julia⋅Wadhwa, Raoul R⋅Wadhwa, Raoul R⋅Wadhwa, Raoul R⋅Wadhwa, Raoul R⋅Wadhwa, R.R.⋅Wadhwa, Raoul R⋅Yoon, Nara⋅Yoon, Nara⋅Yoon, Nara⋅Yoon, Nara⋅Yoon, Nara⋅Yoon, N.⋅Nichol, Daniel⋅Nichol, Daniel⋅Nichol, Daniel⋅Nichol, Daniel⋅Nichol, D.⋅Nichol, Daniel⋅Marusyk, Andriy⋅Marusyk, A.⋅Marusyk, Andriy⋅Marusyk, Andriy⋅Marusyk, Andriy⋅Marusyk, Andriy⋅Hinczewski, Michael⋅Hinczewski, Michael⋅Hinczewski, Michael⋅Hinczewski, Michael⋅Hinczewski, M.⋅Hinczewski, Michael⋅Scott, Jacob G⋅Scott, Jacob G⋅Scott, Jacob G⋅Scott, Jacob G⋅Scott, Jacob G and Scott, J.G.
Physical biology, vol. 16, (no. 4), pp. 041005, 2019-Jun-19. | Journal Article
2018
A simple automated method for continuous fieldwise measurement of microvascular hemodynamics.
Clendenon, Jeffrey L⋅Clendenon, Sherry G⋅Clendenon, Sherry G⋅Fu, Xiao⋅Fu, Xiao⋅Von Hoene, Robert A⋅Von Hoene, Robert A⋅Clendenon, Jeffrey L⋅Sluka, James P⋅Sluka, James P⋅Winfree, Seth⋅Winfree, Seth⋅Mang, Henry⋅Mang, Henry⋅Martinez, Michelle⋅Martinez, Michelle⋅Filson, Adele J⋅Filson, Adele J⋅Klaunig, James E⋅Klaunig, James E⋅Glazier, James A⋅Glazier, James A⋅Dunn, Kenneth W and Dunn, Kenneth W
Microvascular research, vol. 123, pp. 7-13, November 28, 2018. | Journal Article
 
Modeling of xenobiotic transport and metabolism in virtual hepatic lobule models.
Fu, Xiao⋅Fu, Xiao⋅Sluka, James P⋅Sluka, James P⋅Clendenon, Sherry G⋅Clendenon, Sherry G⋅Dunn, Kenneth W⋅Dunn, Kenneth W⋅Wang, Zemin⋅Wang, Zemin⋅Klaunig, James E⋅Klaunig, James E⋅Glazier, James A and Glazier, James A
PloS one, vol. 13, (no. 9), pp. e0198060, 2018. | Journal Article
 
Molecular jenga: the percolation phase transition (collapse) in virus capsids
Brunk, Nicholas⋅Brunk, Nicholas E⋅Lee, Lye Siang⋅Lee, Lye Siang⋅Glazier, James A⋅Glazier, James A⋅Butske, William D⋅Butske, William⋅Zlotnick, Adam and Zlotnick, Adam
Physical biology, vol. 15, (no. 5), pp. 056005, 2018-06-06. | Journal Article
2017
A MODELING AND SIMULATION LANGUAGE FOR BIOLOGICAL CELLS WITH COUPLED MECHANICAL AND CHEMICAL PROCESSES
Somogyi, Endre⋅Somogyi, Endre⋅Glazier, James A and Glazier, James A
Symposium on Theory of Modeling & Simulation : DEVS Integrative M&S Symposium (TMS-DEVS). Symposium on Theory of Modeling and Simulation, vol. 2017, 2017-Apr. | Journal Article
2016
A Computational Model of Peripheral Photocoagulation for the Prevention of Progressive Diabetic Capillary Occlusion
Gast, Thomas J⋅Fu, Xiao⋅Gens, John Scott and Glazier, James A
Journal of diabetes research, vol. 2016, pp. 13, 2016-00-00. | Journal Article
 
A Liver-Centric Multiscale Modeling Framework for Xenobiotics
Sluka, James P.⋅James P Sluka⋅Sluka, James P⋅Sluka, James P⋅Fu, Xiao⋅Fu, Xiao⋅Xiao Fu⋅Fu, Xiao⋅Swat, Maciej⋅Swat, Maciej⋅Maciej Swat⋅Swat, Maciej⋅Belmonte, Julio M⋅Belmonte, Julio M.⋅Julio M Belmonte⋅Belmonte, Julio M⋅Alin Cosmanescu⋅Cosmanescu, Alin⋅Cosmanescu, Alin⋅Cosmanescu, Alin⋅Clendenon, Sherry G⋅Clendenon, Sherry G.⋅Clendenon, Sherry G⋅Sherry G Clendenon⋅John F Wambaugh⋅Wambaugh, John F.⋅Wambaugh, John F⋅Wambaugh, John F⋅Glazier, James A⋅Glazier, James A.⋅Glazier, James A and James A Glazier
PloS one, vol. 11, (no. 9), pp. e0162428, 2016-00-00. | Journal Article
 
Filopodial-Tension Model of Convergent-Extension of Tissues
Belmonte, Julio M⋅Swat, Maciej H and Glazier, James A
PLoS computational biology, vol. 12, (no. 6), pp. e1004952, 2016-06-00. | Journal Article
 
Formalizing knowledge in multi-scale agent-based simulations
Somogyi, Endre⋅Somogyi, Endre⋅Somogyi, Endre⋅Sluka, James P⋅Sluka, James⋅Sluka, James⋅Glazier, James⋅Glazier, James A and Glazier, James
Proceedings of the ACM/IEEE 19th International Conference on model driven engineering languages and systems, vol. 16, pp. 122, 10-02-2016. | Journal Article
 
Towards a multi-scale agent-based programming language methodology
Somogyi, Endre⋅Somogyi, Endre⋅Somogyi, Endre⋅Hagar, Amit⋅Hagar, Amit⋅Hagar, Amit⋅Glazier, James A⋅Glazier, James and Glazier, James
Proceedings of the 2016 Winter Simulation Conference, vol. 2016, pp. 1240, 12-11-2016. | Journal Article
 
Transcriptome analysis reveals manifold mechanisms of cyst development in ADPKD
Almeida, R. M. C.⋅de Almeida, Rita M. C⋅de Almeida, Rita M. C⋅Almeida, Rita M. C.⋅de Almeida, Rita M C⋅Clendenon, Sherry G⋅Clendenon, Sherry G⋅Clendenon, S. G.⋅Clendenon, Sherry G⋅Richards, William G⋅Richards, William G⋅Richards, W. G.⋅Richards, William G⋅Boedigheimer, Michael⋅Boedigheimer, M.⋅Boedigheimer, Michael⋅Boedigheimer, Michael⋅Damore, Michael⋅Damore, M.⋅Damore, Michael⋅Damore, Michael⋅Rossetti, S.⋅Rossetti, Sandro⋅Rossetti, Sandro⋅Rossetti, Sandro⋅Harris, Peter C⋅Harris, Peter C⋅Harris, P. C.⋅Harris, Peter C⋅Herbert, Britney-Shea⋅Herbert, B. S.⋅Herbert, Britney-Shea⋅Herbert, Britney-Shea⋅Xu, Wei Min⋅Xu, W. M.⋅Xu, Wei Min⋅Xu, Wei Min⋅Wandinger-Ness, A.⋅Wandinger-Ness, Angela⋅Wandinger-Ness, Angela⋅Wandinger-Ness, Angela⋅Ward, Heather H⋅Ward, Heather H⋅Ward, Heather H⋅Ward, H. H.⋅Glazier, James A⋅Glazier, James A⋅Glazier, J. A.⋅Glazier, James A⋅Bacallao, R. L.⋅Bacallao, Robert L⋅Bacallao, Robert L and Bacallao, Robert L
Human Genomics, vol. 10, (no. 1), pp. 37, 2016-12-00. | Journal Article
 
Transcriptome analysis reveals manifold mechanisms of cyst development in ADPKD
Blount, Robert J⋅de Almeida, Rita M C⋅Ligthart, Symen⋅Porucznik, Christina A⋅de Almeida, Rita M C⋅Porucznik, Christina A⋅Deroo, Lisa⋅Ligthart, Symen⋅Jorge-Nebert, Lucia F⋅de Almeida, Rita M C⋅Porucznik, Christina A⋅Brown, Adam S⋅Porucznik, Christina A⋅Clendenon, Sherry G⋅Cox, Kyley J⋅Marzi, Carola⋅Cox, Kyley J⋅Kong, Sek Won⋅Cox, Kyley J⋅Zhang, Ge⋅Cox, Kyley J⋅Tran, Minh-Chi⋅Marzi, Carola⋅Clendenon, Sherry G⋅Clendenon, Sherry G⋅Wilcox, Allen J⋅Aslibekyan, Stella⋅Aslibekyan, Stella⋅Everett, Charles K⋅Wilson, Keith M⋅Schliep, Karen C⋅Lie, Rolv T⋅Richards, William G⋅Kohane, Isaac S⋅Schliep, Karen C⋅Schliep, Karen C⋅Schliep, Karen C⋅Richards, William G⋅Richards, William G⋅Boedigheimer, Michael⋅Boedigheimer, Michael⋅Cattamanchi, Adithya⋅Wilkins, Diana G⋅Romitti, Paul A⋅Jiang, Zhengwen⋅Boedigheimer, Michael⋅Mendelson, Michael M⋅Wilkins, Diana G⋅Patel, Chirag J⋅Wilkins, Diana G⋅Wilkins, Diana G⋅Mendelson, Michael M⋅Stanford, Joseph B⋅Conneely, Karen N⋅Conneely, Karen N⋅Damore, Michael⋅Butler, Randall⋅Stanford, Joseph B⋅Stanford, Joseph B⋅Damore, Michael⋅Pedersen, Dorthe Almind⋅Damore, Michael⋅Metcalfe, John Z⋅Stanford, Joseph B⋅Rossetti, Sandro⋅Munger, Ronald G⋅Connor, Denise⋅Rossetti, Sandro⋅Tanaka, Toshiko⋅Tanaka, Toshiko⋅Rossetti, Sandro⋅Gluckman, Jack L⋅Moreno Uribe, Lina M⋅Colicino, Elena⋅Colicino, Elena⋅Harris, Peter C⋅Harris, Peter C⋅Miller, Cecily R⋅Pinney, Susan M⋅Harris, Peter C⋅Herbert, Britney-Shea⋅Nebert, Daniel W⋅Waite, Lindsay L⋅Waite, Lindsay L⋅Grinsdale, Jennifer⋅Herbert, Britney-Shea⋅Herbert, Britney-Shea⋅Wehby, George L⋅Xu, Wei Min⋅Xu, Wei Min⋅Xu, Wei Min⋅Higashi, Julie⋅Joehanes, Roby⋅Joehanes, Roby⋅Nahid, Payam⋅Wandinger-Ness, Angela⋅Guan, Weihua⋅Wandinger-Ness, Angela⋅Wandinger-Ness, Angela⋅Guan, Weihua⋅Brody, Jennifer A⋅Ward, Heather H⋅Ward, Heather H⋅Brody, Jennifer A⋅Ward, Heather H⋅Glazier, James A⋅Elks, Cathy⋅Elks, Cathy⋅Glazier, James A⋅Glazier, James A⋅Bacallao, Robert L⋅Bacallao, Robert L⋅Marioni, Riccardo⋅Bacallao, Robert L⋅Marioni, Riccardo⋅Jhun, Min A⋅Jhun, Min A⋅Agha, Golareh⋅Agha, Golareh⋅Bressler, Jan⋅Bressler, Jan⋅Ward-Caviness, Cavin K⋅Ward-Caviness, Cavin K⋅Chen, Brian H⋅Chen, Brian H⋅Huan, Tianxiao⋅Huan, Tianxiao⋅Bakulski, Kelly⋅Bakulski, Kelly⋅Salfati, Elias L⋅Salfati, Elias L⋅Fiorito, Giovanni⋅Fiorito, Giovanni⋅Wahl, Simone⋅Wahl, Simone⋅Schramm, Katharina⋅Schramm, Katharina⋅Sha, Jin⋅Sha, Jin⋅Hernandez, Dena G⋅Hernandez, Dena G⋅Just, Allan C⋅Just, Allan C⋅Smith, Jennifer A⋅Smith, Jennifer A⋅Sotoodehnia, Nona⋅Sotoodehnia, Nona⋅Pilling, Luke C⋅Pilling, Luke C⋅Pankow, James S⋅Pankow, James S⋅Tsao, Phil S⋅Tsao, Phil S⋅Liu, Chunyu⋅Liu, Chunyu⋅Zhao, Wei⋅Zhao, Wei⋅Guarrera, Simonetta⋅Guarrera, Simonetta⋅Michopoulos, Vasiliki J⋅Michopoulos, Vasiliki J⋅Smith, Alicia K⋅Smith, Alicia K⋅Peters, Marjolein J⋅Peters, Marjolein J⋅Melzer, David⋅Melzer, David⋅Vokonas, Pantel⋅Vokonas, Pantel⋅Fornage, Myriam⋅Fornage, Myriam⋅Prokisch, Holger⋅Prokisch, Holger⋅Bis, Joshua C⋅Bis, Joshua C⋅Chu, Audrey Y⋅Chu, Audrey Y⋅Herder, Christian⋅Herder, Christian⋅Grallert, Harald⋅Grallert, Harald⋅Yao, Chen⋅Yao, Chen⋅Shah, Sonia⋅Shah, Sonia⋅McRae, Allan F⋅McRae, Allan F⋅Lin, Honghuang⋅Lin, Honghuang⋅Horvath, Steve⋅Horvath, Steve⋅Fallin, Daniele⋅Fallin, Daniele⋅Hofman, Albert⋅Hofman, Albert⋅Wareham, Nicholas J⋅Wareham, Nicholas J⋅Wiggins, Kerri L⋅Wiggins, Kerri L⋅Feinberg, Andrew P⋅Feinberg, Andrew P⋅Starr, John M⋅Starr, John M⋅Visscher, Peter M⋅Visscher, Peter M⋅Murabito, Joanne M⋅Murabito, Joanne M⋅Kardia, Sharon L R⋅Kardia, Sharon L R⋅Absher, Devin M⋅Absher, Devin M⋅Binder, Elisabeth B⋅Binder, Elisabeth B⋅Singleton, Andrew B⋅Singleton, Andrew B⋅Bandinelli, Stefania⋅Bandinelli, Stefania⋅Peters, Annette⋅Peters, Annette⋅Waldenberger, Melanie⋅Waldenberger, Melanie⋅Matullo, Giuseppe⋅Matullo, Giuseppe⋅Schwartz, Joel D⋅Schwartz, Joel D⋅Demerath, Ellen W⋅Demerath, Ellen W⋅Uitterlinden, André G⋅Uitterlinden, André G⋅van Meurs, Joyce B J⋅van Meurs, Joyce B J⋅Franco, Oscar H⋅Franco, Oscar H⋅Chen, Yii-Der Ida⋅Chen, Yii-Der Ida⋅Levy, Daniel⋅Levy, Daniel⋅Turner, Stephen T⋅Turner, Stephen T⋅Deary, Ian J⋅Deary, Ian J⋅Ressler, Kerry J⋅Ressler, Kerry J⋅Dupuis, Josée⋅Dupuis, Josée⋅Ferrucci, Luigi⋅Ferrucci, Luigi⋅Ong, Ken K⋅Ong, Ken K⋅Assimes, Themistocles L⋅Assimes, Themistocles L⋅Boerwinkle, Eric⋅Boerwinkle, Eric⋅Koenig, Wolfgang⋅Koenig, Wolfgang⋅Arnett, Donna K⋅Arnett, Donna K⋅Baccarelli, Andrea A⋅Baccarelli, Andrea A⋅Benjamin, Emelia J⋅Benjamin, Emelia J⋅Dehghan, Abbas and Dehghan, Abbas
Human genomics, vol. 10, (no. 1), pp. 37, 2016-Nov-21. | Journal Article
 
Virtual-tissue computer simulations define the roles of cell adhesion and proliferation in the onset of kidney cystic disease
Belmonte, Julio M⋅Belmonte, Julio M⋅Clendenon, Sherry G⋅Clendenon, Sherry G⋅Oliveira, Guilherme M⋅Oliveira, Guilherme M⋅Swat, Maciej H⋅Swat, Maciej H⋅Greene, Evan V⋅Greene, Evan V⋅Jeyaraman, Srividhya⋅Jeyaraman, Srividhya⋅Glazier, James A⋅Glazier, James A⋅Bacallao, Robert L and Bacallao, Robert L
Molecular Biology of the Cell, vol. 27, (no. 22), pp. 3685, 2016-11-07. | Journal Article
2015
3D simulations of wet foam coarsening evidence a self similar growth regime.
Thomas, G.L.⋅Thomas, G. L.⋅Thomas, Gilberto L⋅Belmonte, J.M.⋅Belmonte, J. M.⋅Belmonte, Julio M⋅Graner, F.⋅Graner, F.⋅Graner, François⋅Glazier, J. A.⋅Glazier, J.A.⋅Glazier, James A⋅Almeida, R.M.C.⋅de Almeida, Rita M C and Almeida, R. M. C.
Colloids and surfaces. A, Physicochemical and engineering aspects, vol. 473, pp. 109-114, May 20, 2015. | Journal Article
 
Emergent Stratification in Solid Tumors Selects for Reduced Cohesion of Tumor Cells: A Multi-Cell, Virtual-Tissue Model of Tumor Evolution Using CompuCell3D
Swat, M.H.⋅Swat, Maciej H⋅Swat, Maciej H.⋅Thomas, G.L.⋅Thomas, Gilberto L⋅Thomas, Gilberto L.⋅Shirinifard, A.⋅Shirinifard, Abbas⋅Shirinifard, Abbas⋅Clendenon, Sherry G⋅Clendenon, S.G.⋅Clendenon, Sherry G.⋅Glazier, J.A.⋅Glazier, James A. and Glazier, James A
PloS one, vol. 10, (no. 6), pp. e0127972, 2015-00-00. | Journal Article
 
libRoadRunner: a high performance SBML simulation and analysis library: Table 1
Somogyi, Endre T⋅Somogyi, Endre T⋅Bouteiller, Jean-Marie⋅Bouteiller, Jean-Marie⋅Glazier, James A⋅Glazier, James A⋅König, Matthias⋅König, Matthias⋅Medley, J Kyle⋅Medley, J. Kyle⋅Swat, Maciej H⋅Swat, Maciej H⋅Sauro, Herbert M and Sauro, Herbert M
Bioinformatics, vol. 31, (no. 20), pp. 3321, 2015-10-15. | Journal Article
2014
Fabricating microfluidic valve master molds in SU-8 photoresist
Dy, Aaron J⋅Dy, Aaron J⋅Dy, Aaron J⋅Cosmanescu, Alin⋅Cosmanescu, Alin⋅Cosmanescu, Alin⋅Sluka, James⋅Sluka, James⋅Sluka, James⋅Glazier, James A⋅Glazier, James A⋅Glazier, James A⋅Stupack, Dwayne⋅Stupack, Dwayne⋅Stupack, Dwayne⋅Amarie, Dragos⋅Amarie, Dragos and Amarie, Dragos
Journal of Micromechanics and Microengineering, vol. 24, (no. 5), pp. 57001, 2014-05-01. | Journal Article
 
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents
Sluka, James P⋅Sluka, James P⋅Sluka, James P⋅Shirinifard, Abbas⋅Shirinifard, Abbas⋅Shirinifard, Abbas⋅Swat, Maciej⋅Swat, Maciej⋅Swat, Maciej⋅Cosmanescu, Alin⋅Cosmanescu, Alin⋅Cosmanescu, Alin⋅Heiland, Randy W⋅Heiland, Randy W⋅Heiland, Randy W⋅Glazier, James A⋅Glazier, James A and Glazier, James A
Bioinformatics (Oxford, England), vol. 30, (no. 16), pp. 2374, 2014-Aug-15. | Journal Article
2013
3D quantitative analyses of angiogenic sprout growth dynamics.
Shirinifard, Abbas⋅Shirinifard, A.⋅Mccollum, C.W.⋅McCollum, Catherine W⋅Bolin, Maria B⋅Bolin, M.B.⋅Gustafsson, J..-A.⋅Gustafsson, Jan-Åke⋅Glazier, James A⋅Glazier, J.A.⋅Clendenon, S.G. and Clendenon, Sherry
Developmental dynamics : an official publication of the American Association of Anatomists, vol. 242, (no. 5), pp. 518-26, 2013/May. | Journal Article
2012
Adhesion failures determine the pattern of choroidal neovascularization in the eye: a computer simulation study.
Shirinifard, Abbas⋅Glazier, James A⋅Swat, Maciej⋅Gens, J S⋅Family, Fereydoon⋅Jiang, Yi and Grossniklaus, Hans E
PLoS computational biology, vol. 8, (no. 5), pp. e1002440, 2012. | Journal Article
 
Chapter 13 - Multi-Scale Modeling of Tissues Using CompuCell3D
Swat, Maciej H⋅Swat, M.H.⋅Thomas, G.L.⋅Thomas, Gilberto L⋅Belmonte, Julio M⋅Belmonte, J.M.⋅Shirinifard, Abbas⋅Shirinifard, A.⋅Hmeljak, D.⋅Hmeljak, Dimitrij⋅Glazier, James A and Glazier, J.A.
Methods in Cell Biology, vol. 110, pp. 325-366, 2012. | Journal Article
 
Label-free microcavity biosensors: steps towards personalized medicine.
Amarie, Dragos⋅Amarie, Dragos⋅Glazier, James A and Glazier, James A
Sensors (Basel, Switzerland), vol. 12, (no. 12), pp. 17262-94, 2012. | Journal Article
 
Multi-scale modeling of tissues using CompuCell3D.
Swat, Maciej H⋅Thomas, Gilberto L⋅Belmonte, Julio M⋅Shirinifard, Abbas⋅Hmeljak, Dimitrij and Glazier, James A
Methods in cell biology, vol. 110, pp. 325-66, 2012. | Journal Article
2011
A multi-cell, multi-scale model of vertebrate segmentation and somite formation.
Hester, Susan D⋅Belmonte, Julio M⋅Gens, J S⋅Clendenon, Sherry and Glazier, James A
PLoS computational biology, vol. 7, (no. 10), pp. e1002155, 2011/Oct. | Journal Article