226 Publications (Page 2 of 10)
2015
Hybridization and the Origin of Contagious Asexuality in Daphnia pulex.
Xu, Sen⋅Xu, Sen⋅Spitze, Ken⋅Spitze, Ken⋅Ackerman, Matthew S⋅Ackerman, Matthew S⋅Ye, Zhiqiang⋅Ye, Zhiqiang⋅Bright, Lydia⋅Bright, Lydia⋅Keith, Nathan⋅Keith, Nathan⋅Jackson, Craig E⋅Jackson, Craig E⋅Shaw, Joseph R⋅Shaw, Joseph R⋅Lynch, Michael and Lynch, Michael
Molecular biology and evolution, vol. 32, (no. 12), pp. 3215-3225, December 2015. | Journal Article
 
Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization.
Gout, Jean-Francois and Lynch, Michael
Molecular biology and evolution, vol. 32, (no. 8), pp. 2141-2148, August 2015. | Journal Article
 
The bioenergetic costs of a gene.
Lynch, Michael and Marinov, Georgi K
Proceedings of the National Academy of Sciences of the United States of America, vol. 112, (no. 51), pp. 15690-15695, December 22, 2015. | Journal Article
 
The Spontaneous Mutation Rate in the Fission Yeast Schizosaccharomyces pombe
Farlow, Ashley⋅Farlow, Ashley⋅Long, Hongan⋅Long, Hongan⋅Arnoux, Stéphanie⋅Arnoux, Stéphanie⋅Sung, Way⋅Sung, Way⋅Doak, Thomas⋅Doak, Thomas G⋅Nordborg, Magnus⋅Nordborg, Magnus⋅Lynch, Michael and Lynch, Michael
Genetics, vol. 201, (no. 2), pp. 737-5SI, Oct 2015. | Journal Article
2014
Characterization of newly gained introns in Daphnia populations.
Li, Wenli⋅Li, Wenli⋅Kuzoff, Robert⋅Kuzoff, Robert⋅Wong, Chen Khuan⋅Wong, Chen Khuan⋅Tucker, Abraham⋅Tucker, Abraham⋅Lynch, Michael and Lynch, Michael
Genome biology and evolution, vol. 6, (no. 9), pp. 2218-2234, August 14, 2014. | Journal Article
 
Deciphering the evolutionary history of open and closed mitosis.
Sazer, Shelley⋅Lynch, Michael and Needleman, Daniel
Current biology : CB, vol. 24, (no. 22), pp. R1099-R1103, November 17, 2014. | Journal Article
 
Differential retention and divergent resolution of duplicate genes following whole-genome duplication.
McGrath, Casey L⋅Gout, Jean-Francois⋅Johri, Parul⋅Doak, Thomas G and Lynch, Michael
Genome research, vol. 24, (no. 10), pp. 1665-1675, October 2014. | Journal Article
 
Evolutionary cell biology: two origins, one objective.
Lynch, Michael⋅Field, Mark C⋅Goodson, Holly V⋅Malik, Harmit S⋅Pereira-Leal, José B⋅Roos, David S⋅Turkewitz, Aaron P and Sazer, Shelley
Proceedings of the National Academy of Sciences of the United States of America, vol. 111, (no. 48), pp. 16990-16994, December 2, 2014. | Journal Article
 
Genome-Wide Estimation of Linkage Disequilibrium from Population-Level High-Throughput Sequencing Data
Maruki, Takahiro⋅Maruki, Takahiro⋅Lynch, Michael and Lynch, Michael
Genetics, vol. 197, (no. 4), pp. 1303-9SI, Aug 2014. | Journal Article
 
Genome-Wide Linkage-Disequilibrium Profiles from Single Individuals
Lynch, Michael⋅Lynch, Michael⋅Xu, Sen⋅Xu, Sen⋅Maruki, Takahiro⋅Maruki, Takahiro⋅Jiang, Xiaoqian⋅Jiang, Xiaoqian⋅Pfaffelhuber, Peter⋅Pfaffelhuber, Peter⋅Haubold, Bernhard and Haubold, Bernhard
Genetics, vol. 198, (no. 1), pp. 269-81, Sep 2014. | Journal Article
 
Insights into Three Whole-Genome Duplications Gleaned from the Paramecium caudatum Genome Sequence
McGrath, Casey L⋅McGrath, Casey L⋅Gout, Jean-Francois⋅Gout, Jean-Francois⋅Doak, Thomas G⋅Doak, Thomas⋅Yanagi, Akira⋅Yanagi, Akira⋅Lynch, Michael and Lynch, Michael
Genetics, vol. 197, (no. 4), pp. 1417-8SI, Aug 2014. | Journal Article
 
Population-genetic inference from pooled-sequencing data.
Lynch, Michael⋅Lynch, Michael⋅Lynch, Michael⋅Bost, Darius⋅Bost, Darius⋅Bost, Darius⋅Wilson, Sade⋅Wilson, Sade⋅Wilson, Sade⋅Maruki, Takahiro⋅Maruki, Takahiro⋅Maruki, Takahiro⋅Harrison, Scott⋅Harrison, Scott and Harrison, Scott
Genome biology and evolution, vol. 6, (no. 5), pp. 1210-1218, April 30, 2014. | Journal Article
2013
A genomic survey of Reb homologs suggests widespread occurrence of R-bodies in proteobacteria.
Raymann, Kasie⋅Raymann, Kasie⋅Bobay, Louis-Marie⋅Bobay, Louis-Marie⋅Doak, Thomas G⋅Doak, Thomas⋅Lynch, Michael⋅Lynch, Michael⋅Gribaldo, Simonetta and Gribaldo, Simonetta
G3 (Bethesda, Md.), vol. 3, (no. 3), pp. 505-16, 2013/Mar. | Journal Article
 
Architecture and evolution of a minute plant genome.
Ibarra-Laclette, Enrique⋅Ibarra-Laclette, Enrique⋅Lyons, Eric⋅Lyons, Eric⋅Hernández-Guzmán, Gustavo⋅Hernández-Guzmán, Gustavo⋅Pérez-Torres, Claudia A⋅Pérez-Torres, Claudia A⋅Carretero-Paulet, Lorenzo⋅Carretero-Paulet, Lorenzo⋅Chang, Tien-Hao⋅Chang, Tien-Hao⋅Lan, Tianying⋅Lan, Tianying⋅Welch, Andreanna J⋅Welch, Andreanna J⋅Juárez, María J⋅Abraham Juárez, María J⋅Simpson, June⋅Simpson, June⋅Fernández-Cortés, Araceli⋅Fernández-Cortés, Araceli⋅Arteaga-Vázquez, Mario⋅Arteaga-Vázquez, Mario⋅Góngora-Castillo, Elsa⋅Góngora-Castillo, Elsa⋅Acevedo-Hernández, Gustavo⋅Acevedo-Hernández, Gustavo⋅Schuster, Stephan⋅Schuster, Stephan C⋅Himmelbauer, Heinz⋅Himmelbauer, Heinz⋅Minoche, André E⋅Minoche, André E⋅Xu, Sen⋅Xu, Sen⋅Lynch, Michael⋅Lynch, Michael⋅Oropeza-Aburto, Araceli⋅Oropeza-Aburto, Araceli⋅Cervantes-Pérez, Sergio A⋅Cervantes-Pérez, Sergio A⋅de Jesús Ortega-Estrada, María⋅Ortega-Estrada, María d⋅Cervantes-Luevano, Jacob I⋅Cervantes-Luevano, Jacob I⋅Michael, Todd P⋅Michael, Todd P⋅Mockler, Todd⋅Mockler, Todd C⋅Bryant, Douglas⋅Bryant, Douglas⋅Herrera-Estrella, Alfredo⋅Herrera-Estrella, Alfredo⋅Albert, Victor A⋅Albert, Victor A⋅Herrera-Estrella, Luis and Herrera-Estrella, Luis
Nature, vol. 498, (no. 7452), pp. 94-8, 2013/Jun/6. | Journal Article
 
A simple model to explain evolutionary trends of eukaryotic gene architecture and expression: how competition between splicing and cleavage/polyadenylation factors may affect gene expression and splice-site recognition in eukaryotes.
Catania, Francesco⋅Catania, Francesco⋅Lynch, Michael and Lynch, Michael
BioEssays : news and reviews in molecular, cellular and developmental biology, vol. 35, (no. 6), pp. 561-70, 2013/Jun. | Journal Article
 
Evolutionary diversification of the multimeric states of proteins.
Lynch, Michael and Lynch, Michael
Proceedings of the National Academy of Sciences of the United States of America, vol. 110, (no. 30), pp. E2821-8, 2013/Jul/23. | Journal Article
 
Genomic background and generation time influence deleterious mutation rates in Daphnia.
Latta, Leigh C⋅Latta, Leigh C⋅Morgan, Kendall K⋅Morgan, Kendall K⋅Weaver, Casse S⋅Weaver, Casse S⋅Allen, Desiree⋅Allen, Desiree⋅Schaack, Sarah⋅Schaack, Sarah⋅Lynch, Michael and Lynch, Michael
Genetics, vol. 193, (no. 2), pp. 539-44, 2013/Feb. | Journal Article
 
Large-scale detection of in vivo transcription errors
Gout, Jean-François⋅Thomas, William K⋅Smith, Zachary⋅Okamoto, Kazufusa and Lynch, Michael
Proceedings of the National Academy of Sciences of the United States of America, vol. 110, (no. 46), Nov 12, 2013. | Journal Article
 
Polynucleobacter necessarius, a model for genome reduction in both free-living and symbiotic bacteria.
Boscaro, Vittorio⋅Felletti, Michele⋅Vannini, Claudia⋅Ackerman, Matthew S⋅Chain, Patrick S⋅Malfatti, Stephanie⋅Vergez, Lisa M⋅Shin, Maria⋅Doak, Thomas⋅Lynch, Michael and Petroni, Giulio
Proceedings of the National Academy of Sciences of the United States of America, vol. 110, (no. 46), pp. 18590-5, 2013/Nov/12. | Journal Article
 
Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex
Tucker, Abraham E⋅Tucker, Abraham E⋅Ackerman, Matthew S⋅Ackerman, Matthew S⋅Eads, Brian⋅Eads, Brian D⋅Xu, Sen⋅Xu, Sen⋅Lynch, Michael and Lynch, Michael
Proceedings of the National Academy of Sciences of the United States of America, vol. 110, (no. 39), Sep 24, 2013. | Journal Article
 
Reply to Massey: Drift does influence mutation-rate evolution.
Sung, Way⋅Ackerman, Matthew S⋅Miller, Samuel F⋅Doak, Thomas and Lynch, Michael
Proceedings of the National Academy of Sciences of the United States of America, vol. 110, (no. 10), pp. E860, 2013/Mar/5. | Journal Article
 
Reply to Massey: Drift does influence mutation-rate evolution.
Sung, Way⋅Ackerman, Matthew S⋅Miller, Samuel F⋅Doak, Thomas G and Lynch, Michael
(pp. E860). March 5, 2013
 
Spliced DNA sequences in the Paramecium germline: their properties and evolutionary potential.
Catania, Francesco⋅McGrath, Casey L⋅Doak, Thomas and Lynch, Michael
Genome biology and evolution, vol. 5, (no. 6), pp. 1200-11, 2013. | Journal Article
 
The effect of spontaneous mutations on competitive ability.
Schaack, S⋅Allen, D E⋅Latta, L C⋅Morgan, K K and Lynch, Michael
Journal of evolutionary biology, vol. 26, (no. 2), pp. 451-6, 2013/Feb. | Journal Article
 
The role of hybridization in the origin and spread of asexuality in Daphnia
Xu, Sen⋅Innes, David J⋅Lynch, Michael and Cristescu, Melania E
Molecular Ecology, vol. 22, (no. 17), pp. 4549-4561, Sep 2013. | Journal Article