38 Publications (Page 2 of 2)
2019
A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies
Sun, Zhe⋅Sun, Zhe⋅Sun, Zhe⋅Sun, Zhe⋅Sun, Zhe⋅Sun, Zhe⋅Chen, Li⋅Chen, Li⋅Chen, Li⋅Chen, Li⋅Chen, Li⋅Chen, Li⋅Xin, Hongyi⋅Xin, Hongyi⋅Xin, Hongyi⋅Xin, Hongyi⋅Xin, Hongyi⋅Jiang, Yale⋅Jiang, Yale⋅Jiang, Yale⋅Jiang, Yale⋅Jiang, Yale⋅Jiang, Yale⋅Huang, Qianhui⋅Huang, Qianhui⋅Huang, Qianhui⋅Huang, Qianhui⋅Huang, Qianhui⋅Cillo, Anthony R⋅Cillo, Anthony R⋅Cillo, Anthony R⋅Cillo, Anthony R⋅Cillo, Anthony R⋅Cillo, Anthony R⋅Tabib, Tracy⋅Tabib, Tracy⋅Tabib, Tracy⋅Tabib, Tracy⋅Tabib, Tracy⋅Kolls, Jay K⋅Kolls, Jay K⋅Kolls, Jay K⋅Kolls, Jay K⋅Kolls, Jay K⋅Kolls, Jay K⋅Bruno, Tullia C⋅Bruno, Tullia C⋅Bruno, Tullia C⋅Bruno, Tullia C⋅Bruno, Tullia C⋅Bruno, Tullia C⋅Lafyatis, Robert⋅Lafyatis, Robert⋅Lafyatis, Robert⋅Lafyatis, Robert⋅Lafyatis, Robert⋅Lafyatis, Robert⋅⋅Vignali, Dario A A⋅Vignali, Dario A A⋅Vignali, Dario A A⋅Vignali, Dario A A⋅Vignali, Dario A A⋅Chen, Kong⋅Chen, Kong⋅Chen, Kong⋅Chen, Kong⋅Chen, Kong⋅Chen, Kong⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Ding, Ying⋅Hu, Ming⋅Hu, Ming⋅Hu, Ming⋅Hu, Ming⋅Hu, Ming⋅Hu, Ming⋅Chen, Wei⋅Chen, Wei⋅Chen, Wei⋅Chen, Wei⋅Chen, Wei and Chen, Wei
Nature communications, vol. 10, (no. 1), pp. 1649, 2019-04-09. | Journal Article
 
circMeta: a unified computational framework for genomic feature annotation and differential expression analysis of circular RNAs.
Chen, Li⋅Wang, Feng⋅Bruggeman, Emily C⋅Li, Chao and Yao, Bing
Bioinformatics (Oxford, England), August 2, 2019. | Journal Article
 
Destin: toolkit for single-cell analysis of chromatin accessibility
Urrutia, Eugene⋅Chen, Li⋅Zhou, Haibo and Jiang, Yuchao
Bioinformatics, vol. 35, (no. 19), pp. 3820, 20191001. | Journal Article
2018
Active N6-Methyladenine Demethylation by DMAD Regulates Gene Expression by Coordinating with Polycomb Protein in Neurons.
Yao, Bing⋅Yao, Bing⋅Li, Yujing⋅Li, Yujing⋅Wang, Zhiqin⋅Wang, Zhiqin⋅Chen, Li⋅Chen, Li⋅Poidevin, Mickael⋅Poidevin, Mickael⋅Zhang, Can⋅Zhang, Can⋅Lin, Li⋅Lin, Li⋅Wang, Feng⋅Wang, Feng⋅Bao, Han⋅Bao, Han⋅Jiao, Bin⋅Jiao, Bin⋅Lim, Junghwa⋅Lim, Junghwa⋅Cheng, Ying⋅Cheng, Ying⋅Huang, Luoxiu⋅Huang, Luoxiu⋅Phillips, Brittany Lynn⋅Phillips, Brittany Lynn⋅Xu, Tianlei⋅Xu, Tianlei⋅Duan, Ranhui⋅Duan, Ranhui⋅Moberg, Kenneth H⋅Moberg, Kenneth H⋅Wu, Hao⋅Wu, Hao⋅Jin, Peng and Jin, Peng
Molecular cell, vol. 71, (no. 5), pp. 848-857.e6, September 6, 2018. | Journal Article
 
GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data
Chen, Li⋅Reeve, James⋅Zhang, Lujun⋅Huang, Shengbing⋅Wang, Xuefeng and Chen, Jun
Mar 7, 2018
 
GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data.
Chen, Li⋅Chen, Li⋅Chen, Li⋅Reeve, James⋅Reeve, James⋅Reeve, James⋅Zhang, Lujun⋅Zhang, Lujun⋅Zhang, Lujun⋅Huang, Shengbing⋅Huang, Shengbing⋅Huang, Shengbing⋅Wang, Xuefeng⋅Wang, Xuefeng⋅Wang, Xuefeng⋅Chen, Jun⋅Chen, Jun and Chen, Jun
PeerJ, vol. 6, pp. e4600, 2018. | Journal Article
 
TIVAN: Tissue-specific cis-eQTL single nucleotide variant annotation and prediction
Chen, Li⋅Chen, Li⋅Chen, L.⋅Chen, Li⋅Wang, Ye⋅Wang, Ye⋅Wang, Ye⋅Wang, Y.⋅Yao, Bing⋅Yao, Bing⋅Yao, B.⋅Yao, Bing⋅Mitra, Amit⋅Mitra, Amit⋅Mitra, Amit⋅Mitra, A.⋅Wang, Xu⋅Wang, Xu⋅Wang, X.⋅Wang, Xu⋅Qin, Xiao⋅Qin, Xiao⋅Qin, X. and Qin, Xiao
Bioinformatics, vol. 35, (no. 9), pp. 1575, 2018-10-10. | Journal Article
2017
DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress
Yao, Bing⋅Yao, Bing⋅Cheng, Ying⋅Cheng, Ying⋅Wang, Zhiqin⋅Wang, Zhiqin⋅Li, Yujing⋅Li, Yujing⋅Chen, Li⋅Chen, Li⋅Huang, Luoxiu⋅Huang, Luoxiu⋅Zhang, Wenxin⋅Zhang, Wenxin⋅Chen, Dahua⋅Chen, Dahua⋅Wu, Hao⋅Wu, Hao⋅Tang, Beisha⋅Tang, Beisha⋅Jin, Peng and Jin, Peng
Nature communications, vol. 8, (no. 1), pp. 10, 2017-10-24. | Journal Article
 
GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data
Chen, Li⋅Reeve, James⋅Zhang, Lujun⋅Huang, Shengbing and Chen, Jun
Nov 20, 2017
 
Omicseq: a web-based search engine for exploring omics datasets.
Sun, X.⋅Sun, Xiaobo⋅Pittard, William S⋅Pittard, W.S.⋅Xu, T.⋅Xu, Tianlei⋅Chen, Li⋅Chen, L.⋅Zwick, Michael E⋅Zwick, M.E.⋅Jiang, X.⋅Jiang, Xiaoqian⋅Wang, Fusheng⋅Wang, F.⋅Qin, Zhaohui S and Qin, Z.S.
Nucleic acids research, vol. 45, pp. W445-W452, July 3, 2017. | Journal Article
 
Using DIVAN to assess disease/trait-associated single nucleotide variants in genome-wide scale
Chen, Li and Qin, Zhaohui S
BMC research notes, vol. 10, (no. 1), pp. 530, 2017-Oct-30. | Journal Article
2015
Combined Loss of Tet1 and Tet2 Promotes B Cell, but Not Myeloid Malignancies, in Mice.
Zhao, Zhigang⋅Zhao, Zhigang⋅Zhao, Zhigang⋅Zhao, Zhigang⋅Chen, Li⋅Chen, Li⋅Chen, Li⋅Chen, Li⋅Dawlaty, Meelad M⋅Dawlaty, Meelad M⋅Dawlaty, Meelad M⋅Dawlaty, Meelad M⋅Pan, Feng⋅Pan, Feng⋅Pan, Feng⋅Pan, Feng⋅Weeks, Ophelia⋅Weeks, Ophelia⋅Weeks, Ophelia⋅Weeks, Ophelia⋅Zhou, Yuan⋅Zhou, Yuan⋅Zhou, Yuan⋅Zhou, Yuan⋅Cao, Zeng⋅Cao, Zeng⋅Cao, Zeng⋅Cao, Zeng⋅Shi, Hui⋅Shi, Hui⋅Shi, Hui⋅Shi, Hui⋅Wang, Jiapeng⋅Wang, Jiapeng⋅Wang, Jiapeng⋅Wang, Jiapeng⋅Lin, Li⋅Lin, Li⋅Lin, Li⋅Lin, Li⋅Chen, Shi⋅Chen, Shi⋅Chen, Shi⋅Chen, Shi⋅Yuan, Weiping⋅Yuan, Weiping⋅Yuan, Weiping⋅Yuan, Weiping⋅Qin, Zhaohui⋅Qin, Zhaohui⋅Qin, Zhaohui⋅Qin, Zhaohui⋅Ni, Hongyu⋅Ni, Hongyu⋅Ni, Hongyu⋅Ni, Hongyu⋅Nimer, Stephen D⋅Nimer, Stephen D⋅Nimer, Stephen D⋅Nimer, Stephen D⋅Yang, Feng Chun⋅Yang, Feng-Chun⋅Yang, Feng-Chun⋅Yang, Feng-Chun⋅Jaenisch, Rudolf⋅Jaenisch, Rudolf⋅Jaenisch, Rudolf⋅Jaenisch, Rudolf⋅Jin, Peng⋅Jin, Peng⋅Jin, Peng⋅Jin, Peng⋅Xu, Mingjiang⋅Xu, Mingjiang⋅Xu, Mingjiang and Xu, Mingjiang
Cell reports, vol. 13, (no. 8), pp. 1692-1704, November 24, 2015. | Journal Article
2014
Integrated analysis of whole-genome paired-end and mate-pair sequencing data for identifying genomic structural variations in multiple myeloma.
Yang, R.⋅Yang, Rendong⋅Yang, Rendong⋅Chen, Li⋅Chen, L.⋅Chen, Li⋅Newman, Scott⋅Newman, Scott⋅Newman, S.⋅Gandhi, Khanjan⋅Gandhi, K.⋅Gandhi, Khanjan⋅Doho, Gregory⋅Doho, G.⋅Doho, Gregory⋅Moreno, Carlos S⋅Moreno, Carlos S⋅Moreno, C.S.⋅Vertino, P.M.⋅Vertino, Paula M⋅Vertino, Paula M⋅Bernal-Mizarchi, Leon⋅Bernal-Mizarchi, L.⋅Bernal-Mizarchi, Leon⋅Lonial, Sagar⋅Lonial, Sagar⋅Lonial, S.⋅Boise, L.H.⋅Boise, Lawrence H⋅Boise, Lawrence H⋅Rossi, M.⋅Rossi, Michael⋅Rossi, Michael⋅Kowalski, Jeanne⋅Kowalski, Jeanne⋅Kowalski, J.⋅Qin, Zhaohui S⋅Qin, Z.S. and Qin, Zhaohui S
Cancer informatics, vol. 13, pp. 49-53, 2014. | Journal Article