61 Publications (Page 1 of 3)
2024
CCPA: Cloud-based, self-learning modules for Consensus Pathway Analysis using GO, KEGG and Reactome
 
Current approaches and outstanding challenges of functional annotation of metabolites: a comprehensive review
 
Fourteen years of cellular deconvolution: methodology, applications, technical evaluation and outstanding challenges. Nucleic Acids Research
. | Journal Article
 
RCPA: An Open-Source R Package for Data Processing, Differential Analysis, Consensus Pathway Analysis, and Visualization.
Nguyen, Hung⋅Nguyen, Ha⋅Maghsoudi, Zeynab⋅Tran, Bang⋅Draghici, Sorin and Nguyen, Tin
Current protocols, vol. 4, (no. 5), pp. e1036, May 2024. | Journal Article
 
RCPA: An Open‐Source R Package for Data Processing, Differential Analysis, Consensus Pathway Analysis, and Visualization. Current Protocols
. | Journal Article
2023
Acyltransferase families that act on thioesters: Sequences, structures, and mechanisms.
de Carvalho, Caio C⋅Murray, Ian P⋅Nguyen, Hung⋅Nguyen, Tin and Cantu, David C
Proteins, September 30, 2023. | Journal Article
 
A novel approach for predicting upstream regulators (PURE) that affect gene expression.
Nguyen, Tuan-Minh⋅Craig, Douglas B⋅Tran, Duc⋅Nguyen, Tin and Draghici, Sorin
Scientific reports, vol. 13, (no. 1), pp. 18571, October 30, 2023. | Journal Article
 
A robust and accurate single-cell data trajectory inference method using ensemble pseudotime.
Zhang, Yifan⋅Zhang, Yifan⋅Tran, Duc⋅Tran, Duc⋅Nguyen, Tin⋅Nguyen, Tin⋅Dascalu, Sergiu M⋅Dascalu, Sergiu M⋅Harris, Frederick C and Harris, Frederick C
BMC bioinformatics, vol. 24, (no. 1), pp. 55, February 20, 2023. | Journal Article
 
Mouse genomic associations with in vitro sensitivity to simulated space radiation.
Cekanaviciute, Egle⋅Tran, Duc⋅Nguyen, Hung⋅Lopez Macha, Alejandra⋅Pariset, Eloise⋅Langley, Sasha⋅Babbi, Giulia⋅Malkani, Sherina⋅Penninckx, Sébastien⋅Schisler, Jonathan C⋅Nguyen, Tin⋅Karpen, Gary H and Costes, Sylvain V
Life sciences in space research, vol. 36, pp. 47-58, February 2023. | Journal Article
2022
A comprehensive survey of the approaches for pathway analysis using multi-omics data integration
Maghsoudi, Zeynab⋅Nguyen, Ha and Tavakkoli, Alireza
Briefings in Bioinformatics. | Journal Article
 
A novel method for single-cell data imputation using subspace regression
Tran, Duc⋅Tran, Bang⋅Nguyen, Hung and Nguyen, Tin
Scientific Reports (Nature Publisher Group), vol. 12, (no. 1), 2022. | Journal Article
 
DrGA: cancer driver gene analysis in a simpler manner.
Nguyen, Quang-Huy⋅Nguyen, Tin and Le, Duc-Hau
BMC bioinformatics, vol. 23, (no. 1), pp. 86, March 5, 2022. | Journal Article
 
Identification and Validation of a Novel Three Hub Long Noncoding RNAs With m6A Modification Signature in Low-Grade Gliomas.
Nguyen, Quang-Huy⋅Nguyen, Tin and Le, Duc-Hau
Frontiers in molecular biosciences, vol. 9, pp. 801931, 2022. | Journal Article
 
Provenance documentation to enable explainable and trustworthy AI: A literature review
Kale, Amruta⋅Nguyen, Tin⋅Harris, Frederick C.⋅Li, Chenhao⋅Zhang, Jiyin and Ma, Xiaogang
Data Intelligence, pp. 1–41. | Journal Article
 
Quantitative proteomic analytic approaches to identify metabolic changes in the medial prefrontal cortex of rats exposed to space radiation.
Laiakis, Evagelia C⋅Pinheiro, Maisa⋅Nguyen, Tin⋅Nguyen, Hung⋅Beheshti, Afshin⋅Dutta, Sucharita M⋅Russell, William K⋅Emmett, Mark R and Britten, Richard A
Frontiers in physiology, vol. 13, pp. 971282, 2022. | Journal Article
 
scCAN: single-cell clustering using autoencoder and network fusion
Tran, Bang⋅Tran, Duc⋅Nguyen, Hung⋅Ro, Seungil and Nguyen, Tin
Scientific Reports (Nature Publisher Group), vol. 12, (no. 1), 2022. | Journal Article
 
The association between diabetes and gastric cancer: results from the Stomach Cancer Pooling Project Consortium
Dabo, Bashir⋅Pelucchi, Claudio⋅Rota, Matteo⋅Jain, Harshonnati⋅Bertuccio, Paola⋅Bonzi, Rossella⋅Palli, Domenico⋅Ferraroni, Monica⋅Zhang, Zuo-Feng⋅Sanchez-Anguiano, Aurora⋅Pham, Yen Thi-Hai⋅Tran, Chi Thi-Du⋅Yu, Guo-Pei⋅Nguyen, Tin C.⋅Muscat, Joshua⋅Tsugane, Shoichiro⋅Hidaka, Akihisa⋅Hamada, Gerson S.⋅Zaridze, David⋅Maximovitch, Dmitry⋅Kogevinas, Manolis⋅Larrea, Nerea Fernàndez⋅Boccia, Stefania⋅Pastorino, Roberta⋅Kurtz, Robert C.⋅Lagiou, Areti⋅Vioque, Jesus⋅Camargo, M. Constanza⋅Curado, Maria Paula⋅Lunet, Nuno⋅Boffetta, Paolo⋅Negri, Eva⋅Vecchia, Carlo La and Luu, Hung N.
European Journal of Cancer Prevention, vol. 31, pp. 260–269. | Journal Article
 
The Association between Serum Serine and Glycine and Related-Metabolites with Pancreatic Cancer in a Prospective Cohort Study
Luu, Hung N⋅Luu, Hung N⋅Luu, Hung N⋅Luu, Hung N⋅Paragomi, Pedram⋅Paragomi, Pedram⋅Wang, Renwei⋅Wang, Renwei⋅Huang, Joyce Y⋅Huang, Joyce Y⋅Adams-Haduch, Jennifer⋅Adams-Haduch, Jennifer⋅Midttun, Øivind⋅Midttun, Øivind⋅Ulvik, Arve⋅Ulvik, Arve⋅Nguyen, Tin C⋅Nguyen, Tin C⋅Brand, Randall E⋅Brand, Randall E⋅Gao, Yutang⋅Gao, Yutang⋅Ueland, Per M⋅Ueland, Per M⋅Jian-Min, Yuan and Jian-Min, Yuan
Cancers, vol. 14, (no. 9), 2022. | Journal Article
2021
CPA: a web-based platform for consensus pathway analysis and interactive visualization.
Nguyen, Hung⋅Tran, Duc⋅Galazka, Jonathan M⋅Costes, Sylvain V⋅Beheshti, Afshin⋅Petereit, Juli⋅Draghici, Sorin and Nguyen, Tin
Nucleic acids research, May 25, 2021. | Journal Article
 
Fast and precise single-cell data analysis using a hierarchical autoencoder
Tran, Duc⋅Nguyen, Hung⋅Tran, Bang⋅⋅Luu, Hung N and Nguyen, Tin
Nature Communications, vol. 12, (no. 1), 2021. | Journal Article
 
Re-Identification of Patient Subgroups in Uveal Melanoma
Nguyen, Thi Hai Yen and Le, Duc-Hau
Frontiers in Oncology, vol. 11. | Journal Article
 
scIDS: Single-cell Imputation by combining Deep autoencoder neural networks and Subspace regression
Tran, Bang⋅Nguyen, Quyen and Shrestha, Sangam
IEEE
 
Single-Cell RNA Sequencing Data Imputation Using Deep Neural Network
Tran, Duc⋅Harris, Frederick C.⋅Vo, Nam Sy and Nguyen, Hung
(pp. 403–410). Springer International Publishing
 
Single-cell RNA sequencing data imputation using similarity preserving network
Tran, Duc⋅Nguyen, Hung and Harris, Frederick C.
IEEE
 
SMRT: Randomized Data Transformation for Cancer Subtyping and Big Data Analysis
Nguyen, Hung⋅Tran, Duc⋅Roy, Monikrishna⋅Cassell, Adam⋅Dascalu, Sergiu and Draghici, Sorin
Frontiers in Oncology, vol. 11. | Journal Article