25 Publications
2015
Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes.
Kumar, AjaySeetan, RaedMergoum, MohamedTiwari, Vijay KIqbal, Muhammad JWang, YiAl-Azzam, OmarŠimková, HanaLuo, Ming-ChengDvorak, JanGu, Yong QDenton, AnneKilian, AndrzejLazo, Gerard R and Kianian, Shahryar F
BMC genomics, vol. 16, pp. 800, 2015. | Journal Article
2014
Reliable Radiation Hybrid Maps: An Efficient Scalable Clustering-Based Approach.
Seetan, Raed IDenton, Anne MAl-Azzam, OmarKumar, AjayIqbal, M Javed and Kianian, Shahryar F
IEEE/ACM transactions on computational biology and bioinformatics, vol. 11, (no. 5), pp. 788-800. | Journal Article
2013
A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus
Michalak De Jimenez, Monika KBassi, FilippoGhavami, FarhadSimons, KristinDizon, RissaSeetan, Raed IAlnemer, Loai MDenton, Anne MDoramaci, MünevverSimková, HanaDolezel, JaroslavSeth, KiranLuo, MingchengDvorak, JanGu, Yong Q and Kianian, Shahryar F
Functional & Integrative Genomics, vol. 13, (no. 1), pp. 19-32, Mar 2013. | Journal Article
 
Wheat Zapper: a flexible online tool for colinearity studies in grass genomes.
Alnemer, Loai MSeetan, Raed IBassi, FilippoChitraranjan, CharithHelsene, AdamLoree, PaulGoshn, Steve BGu, Yong QLuo, MingchengIqbal, M JLazo, Gerard RDenton, Anne M and Kianian, Shahryar F
Functional & integrative genomics, vol. 13, (no. 1), pp. 11-7, 2013/Mar. | Journal Article
2012
A resource for the in silico identification of fungal polyketide synthases from predicted fungal proteomes.
Delgado, Javier AAl-Azzam, OmarDenton, Anne MMarkell, Samuel G and Goswami, Rubella S
Molecular plant pathology, vol. 13, (no. 5), pp. 494-507, 2012/Jun. | Journal Article
 
DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum
Kumar, AjayBassi, Filippo MPaux, EtienneAl-Azzam, Omarde Jimenez, Monika MDenton, Anne MGu, Yong QHuttner, EricKilian, AndrzejKumar, SachinGoyal, AakashIqbal, Muhammad JTiwari, Vijay KDogramaci, MunevverBalyan, Harindra SDhaliwal, Harcharan SGupta, Pushpendra KRandhawa, Gursharn SFeuillet, CatherinePawlowski, Wojciech P and Kianian, Shahryar F
BMC Genomics, vol. 13, (no. 1), pp. 339, 2012. | Journal Article
 
DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum.
Kumar, AjayBassi, FilippoPaux, EtienneAl-Azzam, Omarde Jimenez, Monika MDenton, Anne MGu, Yong QHuttner, EricKilian, AndrzejKumar, SachinGoyal, AakashIqbal, Muhammad JTiwari, Vijay KDogramaci, MunevverBalyan, Harindra SDhaliwal, Harcharan SGupta, Pushpendra KRandhawa, Gursharn SFeuillet, CatherinePawlowski, Wojciech P and Kianian, Shahryar F
BMC genomics, vol. 13, pp. 339, 2012. | Journal Article
 
Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii
Kumar, AjaySimons, KristinIqbal, Muhammad Jde Jiménez, Monikade Jimenez, Monika MBassi, Filippo MGhavami, FarhadAl-Azzam, OmarDrader, ThomasWang, YiLuo, MingchengGu, Yong QDenton, Anne MLazo, Gerard RXu, Steven SDvorak, JanKianian, Penny M and Kianian, Shahryar F
BMC Genomics, vol. 13, (no. 1), pp. 597, 2012. | Journal Article
 
Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii.
Kumar, AjaySimons, KristinIqbal, Muhammad Jde Jiménez, Monika MBassi, FilippoGhavami, FarhadAl-Azzam, OmarDrader, ThomasWang, YiLuo, MingchengGu, Yong QDenton, Anne MLazo, Gerard RXu, Steven SDvorak, JanKianian, Penny M and Kianian, Shahryar F
BMC genomics, vol. 13, pp. 597, 2012. | Journal Article
2010
Environmental and genetic factors that contribute to Escherichia coli K-12 biofilm formation.
Prüss, Birgit MVerma, KaranSamanta, PriyankarSule, PreetiKumar, SunilWu, JianfeiChristianson, DavidHorne, Shelley MStafslien, Shane JWolfe, Alan J and Denton, Anne M
Archives of microbiology, vol. 192, (no. 9), pp. 715-28, 2010/Sep. | Journal Article
 
Generalised Sequence Signatures through symbolic clustering
Dorr, Dietmar H and Denton, Anne M
International Journal of Data Mining and Bioinformatics, vol. 4, (no. 6), pp. 656-674, 2010. | Journal Article
2009
Clustering sequences by overlap.
Dorr, Dietmar H and Denton, Anne M
International journal of data mining and bioinformatics, vol. 3, (no. 3), pp. 260-79, 2009. | Journal Article
 
Data mining of vector-item patterns using neighborhood histograms
Denton, Anne M and Wu, Jianfei
Knowledge and Information Systems, vol. 21, (no. 2), pp. 173-199, Nov 2009. | Journal Article
 
Pattern-based time-series subsequence clustering using radial distribution functions
Denton, Anne MBesemann, Christopher A and Dorr, Dietmar H
Knowledge and Information Systems, vol. 18, (no. 1), pp. 1-27, Jan 2009. | Journal Article
 
Subspace sums for extracting non-random data from massive noise
Denton, Anne M
Knowledge and Information Systems, vol. 20, (no. 1), pp. 35-62, Jul 2009. | Journal Article
2008
A pattern mining approach toward discovering generalized sequence signatures
Dorr, Dietmar H and Denton, Anne M
Society for Industrial and Applied Mathematics. Proceedings of the SIAM International Conference on Data Mining, pp. 353, 2008. | Journal Article
 
Relating gene expression data on two-component systems to functional annotations in Escherichia coli
Denton, Anne MWu, JianfeiTownsend, Megan KSule, Preeti and Pruess, Birgit M
BMC Bioinformatics, vol. 9, pp. 294-294, 2008. | Journal Article
 
Relating gene expression data on two-component systems to functional annotations in Escherichia coli.
Denton, Anne MWu, JianfeiTownsend, Megan KSule, Preeti and Prüss, Birgit M
BMC bioinformatics, vol. 9, pp. 294, 2008. | Journal Article
2007
An efficient weighted nearest neighbour classifier using vertical data representation
Perrizo, William KDing, QinKhan, MaleqDenton, Anne M and Ding, Qiang
International Journal of Business Intelligence and Data Mining, vol. 2, (no. 1), pp. 64-78, 2007. | Journal Article
2006
A Complex Transcription Network Controls the Early Stages of Biofilm Development by Escherichia coli
Pruess, Birgit MBesemann, ChristopherDenton, Anne M and Wolfe, Alan J
Journal of Bacteriology, vol. 188, (no. 11), pp. 3731-3739, 2006. | Journal Article
 
BISON: bio-interface for the semi-global analysis of network patterns
Besemann, ChristopherDenton, Anne MCarr, Nathan J and Prue beta, Birgit M
Source Code for Biology and Medicine, vol. 1, 2006. | Journal Article
 
BISON: Bio-Interface for the Semi-global analysis Of Network patterns.
Besemann, ChristopherDenton, Anne MCarr, Nathan J and Prüss, Birgit M
Source code for biology and medicine, vol. 1, pp. 8, 2006. | Journal Article
 
Exploiting edge semantics in citation graphs using efficient, vertical ARM
Rahal, ImadRen, DongmeiWu, WeihuaDenton, Anne MBesemann, Christopher and Perrizo, William K
Knowledge and Information Systems, vol. 10, (no. 1), pp. 57-91, Jul 2006. | Journal Article
2005
Integration of profile hidden Markov model output into association rule mining
Besemann, Christopher and Denton, Anne M
Conference on Knowledge Discovery in Data: Proceeding of the eleventh ACM SIGKDD international conference on Knowledge discovery in data mining; 21-24 Aug. 2005. 2005. | Conference Proceeding
2002
P-tree classification of yeast gene deletion data
Perera, AmalDenton, Anne MKotala, PratapJockheck, WilliamGranda, Willy V and Perrizo, William K
ACM SIGKDD Explorations Newsletter, vol. 4, (no. 2), pp. 108-109, 2002. | Journal Article