45 Publications (Page 2 of 2)
2016
CartograTree: Enabling landscape genomics for forest trees
Herndon, Nic⋅Grau, Emily S⋅Batra, Iman⋅Demurjian, Steven A⋅Vasquez-Gross, Hans A⋅Staton, Margaret E and Wegrzyn, Jill L
Sep 20, 2016
 
CartograTree: Enabling landscape genomics for forest trees
Herndon, Nic⋅Grau, Emily S⋅Batra, Iman⋅Demurjian Jr, Steven A⋅Vasquez-Gross, Hans A⋅Staton, Margaret E and Wegrzyn, Jill L
 
Domain adaptation algorithms for biological sequence classification
Herndon, Nic
 
Inferential considerations for low-count RNA-seq transcripts: a case study on the dominant prairie grass Andropogon gerardii
Raithel, Seth⋅Raithel, Seth⋅Johnson, Loretta⋅Johnson, Loretta⋅Galliart, Matthew⋅Galliart, Matthew⋅Brown, Sue⋅Brown, Sue⋅Shelton, Jennifer⋅Shelton, Jennifer⋅Herndon, Nicolae⋅Herndon, Nicolae⋅Bello, Nora and Bello, Nora M.
BMC Genomics, vol. 17, pp. 140. | Journal Article
 
Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta
Kanost, Michael R.⋅Arrese, Estela L.⋅Cao, Xiaolong⋅Chen, Yun-Ru⋅Chellapilla, Sanjay⋅Goldsmith, Marian R.⋅Grosse-Wilde, Ewald⋅Heckel, David G.⋅Herndon, Nicolae⋅Jiang, Haobo⋅Papanicolaou, Alexie⋅Qu, Jiaxin⋅Soulages, Jose L.⋅Vogel, Heiko⋅Walters, James⋅Waterhouse, Robert M.⋅Ahn, Seung-Joon⋅Almeida, Francisca C.⋅An, Chunju⋅Aqrawi, Peshtewani⋅Bretschneider, Anne⋅Bryant, William B.⋅Bucks, Sascha⋅Chao, Hsu⋅Chevignon, Germain⋅Christen, Jayne M.⋅Clarke, David F.⋅Dittmer, Neal T.⋅Ferguson, Laura C.F.⋅Garavelou, Spyridoula⋅Gordon, Karl H.J.⋅Gunaratna, Ramesh T.⋅Han, Yi⋅Hauser, Frank⋅He, Yan⋅Heidel-Fischer, Hanna⋅Hirsh, Ariana⋅Hu, Yingxia⋅Jiang, Hongbo⋅Kalra, Divya⋅Klinner, Christian⋅König, Christopher⋅Kovar, Christie⋅Kroll, Ashley R.⋅Kuwar, Suyog S.⋅Lee, Sandy L.⋅Lehman, Rüdiger⋅Li, Kai⋅Li, Zhaofei⋅Liang, Hanquan⋅Lovelace, Shanna⋅Lu, Zhiqiang⋅Mansfield, Jennifer H.⋅McCulloch, Kyle J.⋅Mathew, Tittu⋅Morton, Brian⋅Muzny, Donna M.⋅Neunemann, David⋅Ongeri, Fiona⋅Pauchet, Yannick⋅Pu, Ling-Ling⋅Pyrousis, Ioannis⋅Rao, Xiang-Jun⋅Redding, Amanda⋅Roesel, Charles⋅Sanchez-Gracia, Alejandro⋅Schaack, Sarah⋅Shukla, Aditi⋅Tetreau, Guillaume⋅Wang, Yang⋅Xiong, Guang-Hua⋅Traut, Walther⋅Walsh, Tom K.⋅Worley, Kim C.⋅Wu, Di⋅Wu, Wenbi⋅Wu, Yuan-Qing⋅Zhang, Xiufeng⋅Zou, Zhen⋅Zucker, Hannah⋅Briscoe, Adriana D.⋅Burmester, Thorsten⋅Clem, Rollie J.⋅Feyereisen, René⋅Grimmelikhuijzen, Cornelis J.P.⋅Hamodrakas, Stavros J.⋅Hansson, Bill S.⋅Huguet, Elisabeth⋅Jermiin, Lars S.⋅Lan, Que⋅Lehman, Herman K.⋅Lorenzen, Marce⋅Merzendorfer, Hans⋅Michalopoulos, Ioannis⋅Morton, David B.⋅Muthukrishnan, Subbaratnam⋅Oakeshott, John G.⋅Palmer, Will⋅Park, Yoonseong⋅Passarelli, A. Lorena⋅Rozas, Julio⋅Schwartz, Lawrence M.⋅Smith, Wendy⋅Southgate, Agnes⋅Vilcinskas, Andreas⋅Vogt, Richard⋅Wang, Ping⋅Werren, John⋅Yu, Xiao-Qiang⋅Zhou, Jing-Jiang⋅Brown, Susan J.⋅Scherer, Steven E.⋅Richards, Stephen and Blissard, Gary W.
Insect Biochemistry and Molecular Biology, vol. 76, pp. 118 - 147. | Journal Article
2015
A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor.
Zhao, Chaoyang⋅Zhao, C.⋅Escalante, L. N.⋅Escalante, Lucio Navarro⋅Chen, Hang⋅Chen, H.⋅Benatti, Thiago R⋅Benatti, T. R.⋅Qu, Jiaxin⋅Qu, J.⋅Chellapilla, S.⋅Chellapilla, Sanjay⋅Waterhouse, R. M.⋅Waterhouse, Robert M⋅Wheeler, David⋅Wheeler, D.⋅Andersson, Martin N⋅Andersson, M. N.⋅Bao, Riyue⋅Bao, R.⋅Batterton, Matthew⋅Batterton, M.⋅Behura, S. K.⋅Behura, Susanta K⋅Blankenburg, Kerstin P⋅Blankenburg, K. P.⋅Caragea, Doina⋅Caragea, D.⋅Carolan, J. C.⋅Carolan, James C⋅Coyle, Marcus⋅Coyle, M.⋅El-Bouhssini, M.⋅El-Bouhssini, Mustapha⋅Francisco, Liezl⋅Francisco, L.⋅Friedrich, Markus⋅Friedrich, M.⋅Gill, Navdeep⋅Gill, N.⋅Grace, T.⋅Grace, Tony⋅Grimmelikhuijzen, C. J.⋅Grimmelikhuijzen, Cornelis J P⋅Han, Yi⋅Han, Y.⋅Hauser, Frank⋅Hauser, F.⋅Herndon, Nicolae⋅Herndon, N.⋅Holder, Michael⋅Holder, M.⋅Ioannidis, P.⋅Ioannidis, Panagiotis⋅Jackson, L.⋅Jackson, LaRonda⋅Javaid, M.⋅Javaid, Mehwish⋅Jhangiani, Shalini N⋅Jhangiani, S. N.⋅Johnson, A. J.⋅Johnson, Alisha J⋅Kalra, D.⋅Kalra, Divya⋅Korchina, Viktoriya⋅Korchina, V.⋅Kovar, C. L.⋅Kovar, Christie L⋅Lara, Fremiet⋅Lara, F.⋅Lee, Sandra L⋅Lee, S. L.⋅Liu, X.⋅Liu, Xuming⋅Löfstedt, Christer⋅Lofstedt, C.⋅Mata, R.⋅Mata, Robert⋅Mathew, Tittu⋅Mathew, T.⋅Muzny, Donna M⋅Muzny, D. M.⋅Nagar, S.⋅Nagar, Swapnil⋅Nazareth, Lynne V⋅Nazareth, L. V.⋅Okwuonu, G.⋅Okwuonu, Geoffrey⋅Ongeri, F.⋅Ongeri, Fiona⋅Perales, L.⋅Perales, Lora⋅Peterson, Brittany F⋅Peterson, B. F.⋅Pu, L. L.⋅Pu, Ling-Ling⋅Robertson, H. M.⋅Robertson, Hugh M⋅Schemerhorn, B. J.⋅Schemerhorn, Brandon J⋅Scherer, Steven E⋅Scherer, S. E.⋅Shreve, Jacob T⋅Shreve, J. T.⋅Simmons, D.⋅Simmons, DeNard⋅Subramanyam, Subhashree⋅Subramanyam, S.⋅Thornton, Rebecca L⋅Thornton, R. L.⋅Xue, Kun⋅Xue, K.⋅Weissenberger, George M⋅Weissenberger, G. M.⋅Williams, C. E.⋅Williams, Christie E⋅Worley, Kim C⋅Worley, K. C.⋅Zhu, Dianhui⋅Zhu, D.⋅Zhu, Y.⋅Zhu, Yiming⋅Harris, Marion O⋅Harris, M. O.⋅Shukle, Richard H⋅Shukle, R. H.⋅Werren, J. H.⋅Werren, John H⋅Zdobnov, E. M.⋅Zdobnov, Evgeny M⋅Chen, M. S.⋅Chen, Ming-Shun⋅Brown, Susan J⋅Brown, S. J.⋅Stuart, J. J.⋅Stuart, Jeffery J⋅Richards, Stephen and Richards, S.
Current biology : CB, vol. 25, (no. 5), pp. 613-620, March 2, 2015. | Journal Article
 
An Evaluation of Self-training Styles for Domain Adaptation on the Task of Splice Site Prediction
Herndon, N.⋅Herndon, Nic⋅Caragea, Doina and Caragea, D.
(pp. 1042–1047). ACM
 
Community Detection-Based Feature Construction for Protein Sequence Classification
Tangirala, K.⋅Tangirala, Karthik⋅Herndon, N.⋅Herndon, Nic⋅Caragea, Doina and Caragea, D.
(pp. 331–342). Springer International Publishing
 
Domain Adaptation with Logistic Regression for the Task of Splice Site Prediction
Herndon, Nic and Caragea, Doina
(pp. 125–137). Springer International Publishing
 
Empirical Study of Domain Adaptation Algorithms on the Task of Splice Site Prediction
Herndon, N.⋅Herndon, Nic⋅Caragea, Doina and Caragea, D.
(pp. 195–211). Springer International Publishing
 
Experimental Study with Real-world Data for Android App Security Analysis Using Machine Learning
Roy, S.⋅Roy, Sankardas⋅DeLoach, Jordan⋅Deloach, J.⋅Li, Yuping⋅Li, Y.⋅Herndon, N.⋅Herndon, Nic⋅Caragea, Doina⋅Caragea, D.⋅Ou, X.⋅Ou, Xinming⋅Ranganath, V.P.⋅Ranganath, Venkatesh Prasad⋅Li, H.⋅Li, Hongmin⋅Guevara, Nicolais and Guevara, N.
(pp. 81–90). ACM
 
Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool
Shelton, Jennifer⋅Coleman, Michelle⋅Herndon, Nic⋅Lu, Nanyan⋅Lam, Ernest⋅Anantharaman, Thomas⋅Sheth, Palak and Brown, Susan
BMC Genomics, vol. 16, 2015. | Journal Article
 
Twitter Mining for Disaster Response: A Domain Adaptation Approach.
Li, H.⋅Li, Hongmin⋅Li, H.⋅Guevara, Nicolais⋅Guevara, N.⋅Guevara, N.⋅Herndon, Nic⋅Herndon, N.⋅Herndon, N.⋅Caragea, D.⋅Caragea, Doina⋅Caragea, D.⋅Neppalli, Kishore⋅Neppalli, K.⋅Neppalli, K.⋅Caragea, C.⋅Caragea, C.⋅Caragea, Cornelia⋅Squicciarini, A.⋅Squicciarini, Anna Cinzia⋅Squicciarini, A.⋅Tapia, Andrea H⋅Tapia, A.H. and Tapia, A.H.
2014
Empirical Study of Domain Adaptation with Naïve Bayes on the Task of Splice Site Prediction
Herndon, N.⋅Herndon, Nic⋅Caragea, Doina and Caragea, D.
(pp. 57-67)
 
Predicting Protein Localization Using a Domain Adaptation Approach
Herndon, N.⋅Herndon, Nic⋅Caragea, Doina and Caragea, D.
(pp. 191–206). Springer Berlin Heidelberg
 
Predicting protein localization using a domain adaptation naïve Bayes classifier with burrows wheeler transform features
Herndon, N.⋅Herndon, N.⋅Tangirala, K.⋅Tangirala, K.⋅Caragea, D. and Caragea, D.
(pp. 501-504)
2008
ATTITUDE: A Tidy Touchscreen Interface to a UML Development Environment
Herndon, Nic
University of Nevada, Reno
2006
Secure Simultaneous Search of Distributed, Heterogeneous Bioinformatics Databases.
Vert, Gregory and Herndon, Nic
(pp. 384–389)
n.d.no date or unknown
Disaster response aided by tweet classification with a domain adaptation approach
Li, H.⋅Li, Hongmin⋅Li, Hongmin⋅Caragea, Doina⋅Caragea, D.⋅Caragea, Doina⋅Caragea, Cornelia⋅Caragea, C.⋅Caragea, Cornelia⋅Herndon, N.⋅Herndon, Nic and Herndon, Nic
Journal of Contingencies and Crisis Management, pp. n/a–n/a. | Journal Article
 
Naive Bayes Domain Adaptation for Biological Sequences