41 Publications (Page 2 of 2)
2012
DNA base-calling from a nanopore using a Viterbi algorithm.
Timp, Winston⋅Timp, Winston⋅Comer, Jeffrey R⋅Comer, Jeffrey⋅Aksimentiev, Aleksei and Aksimentiev, Aleksei
Biophysical journal, vol. 102, (no. 10), pp. L37-9, 2012/May/16. | Journal Article
 
Predicting the DNA sequence dependence of nanopore ion current using atomic-resolution Brownian dynamics.
Comer, Jeffrey and Aksimentiev, Aleksei
The journal of physical chemistry. C, Nanomaterials and interfaces, vol. 116, (no. 5), pp. 3376-3393, February 9, 2012. | Journal Article
 
Toward detection of DNA-bound proteins using solid-state nanopores: insights from computer simulations.
Comer, Jeffrey R⋅Ho, Anthony and Aksimentiev, Aleksei
Electrophoresis, vol. 33, (no. 23), pp. 3466-79, 2012/Dec. | Journal Article
2011
Atoms-to-microns model for small solute transport through sticky nanochannels.
Carr, Rogan⋅Comer, Jeffrey R⋅Ginsberg, Mark D and Aksimentiev, Aleksei
Lab on a chip, (no. 22), pp. 3766-73, 2011/Nov/21. | Journal Article
 
Microscopic Perspective on the Adsorption Isotherm of a Heterogeneous Surface.
Carr, Rogan⋅Comer, Jeffrey⋅Ginsberg, Mark D and Aksimentiev, Aleksei
The journal of physical chemistry letters, vol. 2, (no. 14), pp. 1804-1807, July 2, 2011. | Journal Article
 
Modeling nanopores for sequencing DNA.
Comer, Jeffrey R⋅Wells, David B and Aksimentiev, Aleksei
Methods in molecular biology (Clifton, N.J.), vol. 749, pp. 317-358, 2011. | Journal Article
 
Modeling Pressure-Driven Transport of Proteins through a Nanochannel.
Carr, Rogan⋅Comer, Jeffrey⋅Ginsberg, Mark D and Aksimentiev, Aleksei
IEEE transactions on nanotechnology, vol. 10, (no. 1), pp. 75-82, January 2011. | Journal Article
2010
Nanopore Sequencing: Electrical Measurements of the Code of Life
Timp, Winston⋅Timp, Winston⋅Mirsaidov, Utkur M⋅Mirsaidov, Utkur M.⋅Wang, Deqiang⋅Wang, Deqiang⋅Comer, Jeff⋅Comer, Jeff⋅Aksimentiev, Aleksei⋅Aksimentiev, Aleksei⋅Timp, Gregory and Timp, Gregory
IEEE Transactions on Nanotechnology, vol. 9, (no. 3), pp. 281-294, 2010. | Journal Article
 
Slowing the translocation of double-stranded DNA using a nanopore smaller than the double helix.
Mirsaidov, Utkur⋅Comer, Jeffrey R⋅Dimitrov, Valentin⋅Aksimentiev, Aleksei and Timp, Gregory
Nanotechnology, vol. 21, (no. 39), pp. 395501, 2010/Oct/1. | Journal Article
2009
Analyzing the forces binding a restriction endonuclease to DNA using a synthetic nanopore.
Dorvel, B⋅Sigalov, G⋅Zhao, Q⋅Comer, J⋅Dimitrov, V⋅Mirsaidov, U⋅Aksimentiev, Aleksei and Timp, Gregory
Nucleic acids research, vol. 37, (no. 12), pp. 4170-9, 2009/Jul. | Journal Article
 
Microscopic Mechanics of Hairpin DNA Translocation through Synthetic Nanopores
Comer, Jeffrey⋅Dimitrov, Valentin⋅Zhao, Qian⋅Timp, Gregory and Aksimentiev, Aleksei
Biophysical Journal, vol. 96, (no. 2), pp. 593-608, 2009. | Journal Article
 
Modeling transport through synthetic nanopores
Aksimentiev, Aleksei⋅Brunner, R.⋅Cruz-Chu, E.⋅Cruz-Chú, Eduardo⋅Comer, J. and Schulten, Klaus J
IEEE Nanotechnology Magazine, vol. 3, (no. 1), 2009. | Journal Article
2008
Computer modeling in biotechnology: a partner in development.
Aksimentiev, Aleksei⋅Brunner, Robert⋅Cohen, Jordi⋅Comer, Jeffrey⋅Cruz-Chu, Eduardo⋅Hardy, David⋅Rajan, Aruna⋅Shih, Amy⋅Sigalov, Grigori⋅Yin, Ying and Schulten, Klaus J
Methods in molecular biology (Clifton, N.J.), vol. 474, pp. 181-234, 2008. | Journal Article
 
Detection of DNA sequences using an alternating electric field in a nanopore capacitor.
Sigalov, Grigori⋅Comer, Jeffrey⋅Timp, Gregory and Aksimentiev, Aleksei
Nano letters, vol. 8, (no. 1), pp. 56-63, 2008/Jan. | Journal Article
 
Stretching and unzipping nucleic acid hairpins using a synthetic nanopore.
Zhao, Q⋅Comer, J⋅Dimitrov, V⋅Yemenicioglu, S⋅Aksimentiev, A and Timp, G
Nucleic acids research, vol. 36, (no. 5), pp. 1532-1541, March 2008. | Journal Article
2005
High-voltage SPM oxidation of ZrN: materials for multiscale applications.
Farkas, N⋅Comer, Jeffrey R⋅Zhang, G⋅Evans, E A⋅Ramsier, R D and Dagata, J A
Nanotechnology, vol. 16, (no. 2), pp. 262-6, 2005/Feb. | Journal Article