138 Publications (Page 4 of 6)
2011
Predicted effector molecules in the salivary secretome of the pea aphid (Acyrthosiphon pisum): a dual transcriptomic/proteomic approach.Carolan, James C⋅Caragea, Doina⋅Reardon, Karen T⋅Mutti, Navdeep S⋅Dittmer, Neal⋅Pappan, Kirk L⋅Cui, Feng⋅Castaneto, Marisol⋅Poulain, Julie⋅Dossat, Carole⋅Tagu, Denis⋅Reese, John C⋅Reeck, Gerald R⋅Wilkinson, Thomas L and Edwards, Owain RJournal of proteome research, vol. 10, (no. 4), pp. 1505-18, 2011/Apr/1.
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Predicting friendship links in social networks using a topic modeling approachParimi, R. and Caragea, D.(pp. 75-86)
Study on regulatory motifs in arabidopsis thalianaBahirwani, V. and Caragea, D.(pp. 553-555)
2010
Abstraction Augmented Markov Models.Caragea, Cornelia⋅Silvescu, Adrian⋅Caragea, Doina and Honavar, VasantProceedings. IEEE International Conference on Data Mining, pp. 68-77, December 13, 2010.
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Animal disease event recognition and classificationVolkova, S.⋅Caragea, D.⋅Hsu, W.H. and Bujuru, S.(pp. 54-61)
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneumKim, Hee S⋅Murphy, Terence⋅Xia, Jing⋅Caragea, Doina⋅Park, Yoonseong⋅Beeman, Richard W⋅Lorenzen, Marce D⋅Butcher, Stephen⋅Manak, JRobert and Brown, Susan JNucleic Acids Research, vol. 38, (no. suppl_1), pp. D437-D442, 2010.
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BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum.Kim, Hee S⋅Murphy, Terence⋅Xia, Jing⋅Caragea, Doina⋅Park, Yoonseong Y⋅Beeman, Richard W⋅Lorenzen, Marcé D⋅Butcher, Stephen⋅Manak, J R and Brown, Susan JNucleic acids research, vol. 38, (no. Database issue), pp. D437-42, 2010/Jan.
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Boosting biomedical entity extraction by using syntactic patterns for semantic relation discoveryVolkova, S.⋅Caragea, D.⋅Hsu, W.H.⋅Drouhard, J. and Fowles, L.(pp. 272-278)
Comparative analysis of expressed sequence tags from three castes and two life stages of the termite Reticulitermes flavipes.Steller, Matthew M⋅Kambhampati, Srini and Caragea, DoinaBMC genomics, vol. 11, pp. 463, 2010.
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KSU KDD: Word sense induction by clustering in topic spaceElshamy, W.⋅Caragea, D. and Hsu, W.H.(pp. 367-370)
Prediction of alternatively spliced exons using Support Vector MachinesXia, Jing⋅Caragea, Doina and Brown, Susan JInternational Journal of Data Mining and Bioinformatics, vol. 4, (no. 4), pp. 411-430, 2010.
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Semi-supervised prediction of protein subcellular localization using abstraction augmented Markov modelsCaragea, Cornelia⋅Caragea, Doina⋅Silvescu, Adrian and Honavar, VasantBMC Bioinformatics, vol. 11, (no. 8), pp. S6-S6, 2010.
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Semi-supervised prediction of protein subcellular localization using abstraction augmented Markov models.Caragea, Cornelia⋅Caragea, Doina⋅Silvescu, Adrian and Honavar, VasantBMC bioinformatics, vol. 11 Suppl 8, pp. S6, 2010.
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Semi-supervised sequence classification using Abstraction Augmented Markov ModelsCaragea, C.⋅Caragea, C.⋅Silvescu, A.⋅Silvescu, A.⋅Caragea, D.⋅Caragea, D.⋅Honavar, V. and Honavar, V.(pp. 257-264)
Variation in gene expression of Andropogon gerardii in response to altered environmental conditions associated with climate changeTravers, S.E.⋅Travers, Steve⋅Tang, Z.⋅Tang, Zhongwen⋅Caragea, D.⋅Caragea, Doina⋅Garrett, K.A.⋅Garrett, Karen A⋅Hulbert, Scott H⋅Hulbert, S.H.⋅Leach, Jan E⋅Leach, J.E.⋅Bai, J.⋅Bai, Jianfa⋅Saleh, Amgad⋅Saleh, A.⋅Knapp, Alan K⋅Knapp, A.K.⋅Fay, Philip A⋅Fay, P.A.⋅Nippert, J.⋅Nippert, Jesse B⋅Schnable, Patrick S⋅Schnable, P.S.⋅Smith, M.D. and Smith, Melinda DJournal of Ecology, vol. 98, pp. 374-383.
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2009
Computation of the semantic relatedness between words using concept cloudsKulkarni, S. and Caragea, D.(pp. 183-188)
Exploring wikipedia and DMoz as knowledge bases for engineering a user interests hierarchy for social network applicationsHaridas, M. and Caragea, D.(pp. 1238-1245)
Handbook of Research on Computational Methodologies in Gene Regulatory Networks
Incorporating graph features for predicting protein-protein interactionsParadesi, M.S.R.⋅Caragea, D. and Hsu, W.H.(pp. 45-63)
Learning link-based classifiers from ontology-extended textual dataCaragea, C.⋅Caragea, C.⋅Caragea, D.⋅Caragea, D.⋅Honavar, V. and Honavar, V.(pp. 354-361)
Learning link-based naïve bayes classifiers from ontology-extended distributed dataCaragea, C.⋅Caragea, C.⋅Caragea, D.⋅Caragea, D.⋅Honavar, V. and Honavar, V.(pp. 1139-1146)
Ontology-aware classification and association rule mining for interest and link prediction in social networksAljandal, W.⋅Bahirwani, V.⋅Caragea, D. and Hsu, W.H.(pp. 3-8)
Ontology-based link prediction in the livejournal social networkCaragea, D.⋅Bahirwani, V.⋅Aljandal, W. and Hsu, W.H.(pp. 34-41)
Towards bridging the Web and the Semantic WebKulkarni, S. and Caragea, D.(pp. 667-674)
2008
Exploring alternative splicing features using support vector machinesXia, Jing⋅Xia, J.⋅Caragea, D.⋅Caragea, D.⋅Brown, S. and Brown, S.(pp. 231-238)