54 Publications (Page 1 of 3)
2024
How altricial birds respond to a heat challenge: organismal perspectives on coping with a future climate scenario
 
Quorum Sensing Regulates Virulence Factors in the Coral Pathogen Vibrio coralliilyticus
2023
Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovienii. mBio
. | Journal Article
2022
High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITS. ISME Communications
 
Transcriptome-wide analysis of pseudouridylation in Drosophila melanogaster
2021
A Hybrid Nanofiber/Paper Cell Culture Platform for Building a 3D Blood–Brain Barrier Model
Small Methods. | Journal Article
 
The polar flagellar transcriptional regulatory network in Vibrio campbellii deviates from canonical Vibrio species
Journal of Bacteriology. | Journal Article
2020
High-Resolution Phylogenetic and Population Genetic Analysis of Microbial Communities with RoC-ITS
 
Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests
Mushinski, R.M.⋅Payne, Z.C.⋅Raff, J.D.⋅Craig, M.E.⋅Pusede, S.E.⋅Rusch, D.B.⋅White, J.R. and Phillips, R.P.
Global Change Biology. | Journal Article
 
Probing biophysical sequence constraints within the transmembrane domains of rhodopsin by deep mutational scanning
Penn, Wesley D⋅Penn, Wesley D.⋅McKee, Andrew G.⋅McKee, Andrew G⋅Kuntz, Charles P⋅Kuntz, Charles P.⋅Woods, Hope⋅Woods, Hope⋅Nash, Veronica⋅Nash, Veronica⋅Gruenhagen, Timothy C⋅Gruenhagen, Timothy C.⋅Roushar, Francis J⋅Roushar, Francis J.⋅Chandak, Mahesh⋅Chandak, Mahesh⋅Hemmerich, Chris⋅Hemmerich, Chris⋅Rusch, Douglas B⋅Rusch, Douglas B.⋅Meiler, Jens⋅Meiler, Jens⋅Schlebach, Jonathan P. and Schlebach, Jonathan P
Science Advances. | Journal Article
2019
Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota
McKay, Luke J⋅Dlakić, Mensur⋅Fields, Matthew W⋅Delmont, Tom O⋅Eren, A Murat⋅Jay, Zackary J⋅Klingelsmith, Korinne B⋅Rusch, Douglas B and Inskeep, William P
Nature microbiology, vol. 4, (no. 4), pp. 622, 2019-04-00. | Journal Article
 
Microbial mechanisms and ecosystem flux estimation for aerobic NO y emissions from deciduous forest soils
Mushinski, Ryan M⋅Mushinski, R.M.⋅Mushinski, Ryan M.⋅Mushinski, Ryan⋅Mushinski, Ryan M⋅Mushinski, Ryan M⋅Phillips, R.P.⋅Phillips, Richard P⋅Phillips, Richard P⋅Phillips, Richard P⋅Phillips, Richard P.⋅Phillips, Richard⋅Payne, Zachary C⋅Payne, Z.C.⋅Payne, Zachary⋅Payne, Zachary C.⋅Payne, Zachary C⋅Payne, Zachary C⋅Abney, Rebecca B.⋅Abney, Rebecca B⋅Abney, Rebecca⋅Abney, Rebecca B⋅Abney, Rebecca B⋅Abney, R.B.⋅Jo, Insu⋅Jo, I.⋅Jo, Insu⋅Jo, Insu⋅Jo, Insu⋅Jo, Insu⋅Fei, Songlin⋅Fei, Songlin⋅Fei, Songlin⋅Fei, Songlin⋅Fei, Songlin⋅Fei, S.⋅Pusede, Sally E.⋅Pusede, Sally E⋅Pusede, Sally⋅Pusede, Sally E⋅Pusede, S.E.⋅Pusede, Sally E⋅White, Jeffrey R⋅White, Jeffrey R.⋅White, Jeffrey R⋅White, J.R.⋅White, Jeffrey R⋅White, Jeffrey⋅Rusch, Douglas B⋅Rusch, D.B.⋅Rusch, Douglas B⋅Rusch, Douglas B.⋅Rusch, Douglas⋅Rusch, Douglas B⋅Raff, Jonathan D⋅Raff, Jonathan D⋅Raff, Jonathan D⋅Raff, Jonathan⋅Raff, J.D. and Raff, Jonathan D.
Proceedings of the National Academy of Sciences of the United States of America, vol. 116, (no. 6), pp. 2138, 2019-02-05. | Journal Article
 
The neurogenomic transition from territory establishment to parenting in a territorial female songbird
Bentz, Alexandra B⋅Bentz, Alexandra B⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Buechlein, Aaron⋅Buechlein, Aaron⋅Rosvall, Kimberly A and Rosvall, Kimberly A
BMC Genomics, vol. 20, (no. 1), pp. 819, 2019-12-00. | Journal Article
 
The potential for a released autosomal X-shredder becoming a driving-Y chromosome and invasively suppressing wild populations of malaria mosquitoes
Alcalay, Yehonatan⋅Fuchs, Silke⋅Galizi, Roberto⋅Bernardini, Federica⋅Haghighat-Khah, Roya Elaine⋅Rusch, Douglas B.⋅Adrion, Jeffrey R.⋅Hahn, Matthew W.⋅Tortosa, Pablo and Papathanos, Philippos Aris
Cold Spring Harbor Laboratory
2017
Complete Genome Sequence of the Pathogenic Vibrio vulnificus Type Strain ATCC 27562
Rusch, Douglas B⋅Rusch, Douglas B⋅Rowe-Magnus, Dean A and Rowe Magnus, Dean A
Genome announcements, vol. 5, (no. 35), 2017-Aug-31. | Journal Article
 
Erratum: Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Orsini, Luisa⋅Orsini, Luisa⋅Orsini, Luisa⋅Gilbert, Donald⋅Gilbert, Donald⋅Gilbert, Donald⋅Podicheti, Ram⋅Podicheti, Ram⋅Podicheti, Ram⋅Jansen, Mieke⋅Jansen, Mieke⋅Jansen, Mieke⋅Brown, James B⋅Brown, James B⋅Brown, James B⋅Solari, Omid Shams⋅Solari, Omid Shams⋅Solari, Omid S⋅Spanier, Katina I⋅Spanier, Katina I⋅Spanier, Katina I⋅Colbourne, John K⋅Colbourne, John K⋅Colbourne, John K⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Asselman, Jana⋅Asselman, Jana⋅Asselman, Jana⋅De Schamphelaere, Karel A⋅De Schamphelaere, Karel A.C⋅De Schamphelaere, Karel A C⋅Ebert, Dieter⋅Ebert, Dieter⋅Ebert, Dieter⋅Haag, Christoph R⋅Haag, Christoph R⋅Haag, Christoph R⋅Kvist, Jouni⋅Kvist, Jouni⋅Kvist, Jouni⋅Laforsch, Christian⋅Laforsch, Christian⋅Laforsch, Christian⋅Petrusek, Adam⋅Petrusek, Adam⋅Petrusek, Adam⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Little, Tom J⋅Little, Tom J⋅Little, Tom J⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Pfrender, Michael E⋅Pfrender, Michael E⋅Pfrender, Michael E⋅De Meester, Luc⋅De Meester, Luc⋅De Meester, Luc⋅Frilander, Mikko J⋅Frilander, Mikko J and Frilander, Mikko J
Scientific Data, vol. 4, (no. 1), 2017-12-00. | Journal Article
 
Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly
Llorens-Marès, Tomàs⋅Liu, Zhenfeng⋅Allen, Lisa Zeigler⋅Rusch, Douglas B⋅Craig, Matthew T⋅Dupont, Chris L⋅Bryant, Donald A and Casamayor, Emilio O
The ISME journal, vol. 11, (no. 1), pp. 211, 2017-01-00. | Journal Article
2016
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Orsini, Luisa⋅Orsini, Luisa⋅Orsini, Luisa⋅Orsini, Luisa⋅Gilbert, Donald⋅Gilbert, Donald⋅Gilbert, Donald⋅Gilbert, Donald⋅Podicheti, Ram⋅Podicheti, Ram⋅Podicheti, Ram⋅Podicheti, Ram⋅Jansen, Mieke⋅Jansen, Mieke⋅Jansen, Mieke⋅Jansen, Mieke⋅Brown, James B⋅Brown, James B⋅Brown, James B⋅Brown, James B⋅Solari, Omid Shams⋅Solari, Omid S⋅Solari, Omid Shams⋅Solari, Omid Shams⋅Spanier, Katina I⋅Spanier, Katina I⋅Spanier, Katina I⋅Spanier, Katina I⋅Colbourne, John K⋅Colbourne, John K⋅Colbourne, John K⋅Colbourne, John K⋅Rush, Douglas⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Rush, Douglas⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Asselman, Jana⋅Asselman, Jana⋅Asselman, Jana⋅Asselman, Jana⋅De Schamphelaere, Karel A⋅De Schamphelaere, Karel A C⋅De Schamphelaere, Karel A.C⋅De Schamphelaere, Karel A C⋅Ebert, Dieter⋅Ebert, Dieter⋅Ebert, Dieter⋅Ebert, Dieter⋅Haag, Christoph R⋅Haag, Christoph R⋅Haag, Christoph R⋅Haag, Christoph R⋅Kvist, Jouni⋅Kvist, Jouni⋅Kvist, Jouni⋅Kvist, Jouni⋅Laforsch, Christian⋅Laforsch, Christian⋅Laforsch, Christian⋅Laforsch, Christian⋅Petrusek, Adam⋅Petrusek, Adam⋅Petrusek, Adam⋅Petrusek, Adam⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Little, Tom J⋅Little, Tom J⋅Little, Tom J⋅Little, Tom J⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Pfrender, Michael E⋅Pfrender, Michael E⋅Pfrender, Michael E⋅Pfrender, Michael E⋅De Meester, Luc⋅De Meester, Luc⋅De Meester, Luc⋅De Meester, Luc⋅Frilander, Mikko J⋅Frilander, Mikko J⋅Frilander, Mikko J and Frilander, Mikko J
Scientific Data, vol. 3, (no. 1), pp. 160030, 2016-12-00. | Journal Article
 
Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community
Díez, Beatriz⋅Nylander, Johan A. A⋅Ininbergs, Karolina⋅Dupont, Christopher L⋅Allen, Andrew E⋅Yooseph, Shibu⋅Rusch, Douglas B and Bergman, Birgitta
PLoS ONE, vol. 11, (no. 5), 2016. | Journal Article
 
Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution
Díez, Beatriz⋅Díez, Beatriz⋅Nylander, Johan A A⋅Nylander, Johan⋅Ininbergs, Karolina⋅Ininbergs, Karolina⋅Dupont, Christopher⋅Dupont, Christopher L⋅Allen, Andrew⋅Allen, Andrew E⋅Yooseph, Shibu⋅Yooseph, Shibu⋅Rusch, Douglas B⋅Rusch, Douglas⋅Bergman, Birgitta and Bergman, Birgitta
PloS one, vol. 11, (no. 5), pp. e0155757, 2016-00-00. | Journal Article
 
Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring Metagenomes
Colman, Daniel R⋅Jay, Zackary J⋅Inskeep, William P⋅Jennings, Ryan Dem⋅Maas, Kendra R⋅Rusch, Douglas B and Takacs-Vesbach, Cristina D
Frontiers in Microbiology, vol. 7, 2016-03-01. | Journal Article
 
The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park
Jay, Zackary J⋅Beam, Jacob P⋅Kozubal, Mark A⋅Jennings, Ryan deM⋅Rusch, Douglas B and Inskeep, William P
Environmental Microbiology, vol. 18, (no. 12), pp. 4769, 2016-12-00. | Journal Article
2015
Dual regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in triple-negative breast cancer
Rhodes, Lyndsay V⋅Rhodes, Lyndsay V⋅Martin, Elizabeth C⋅Martin, Elizabeth C⋅Segar, H. Chris⋅Segar, H Chris⋅Miller, David F B⋅Miller, David F. B⋅Buechlein, Aaron⋅Buechlein, Aaron⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Nephew, Kenneth P⋅Nephew, Kenneth P⋅Burow, Matthew E⋅Burow, Matthew E⋅Collins-Burow, Bridgette M and Collins-Burow, Bridgette M
Oncotarget, vol. 6, (no. 18), pp. 16652, 2015-06-30. | Journal Article
 
Effects of the Endocrine-Disrupting Chemical DDT on Self-Renewal and Differentiation of Human Mesenchymal Stem Cells
Strong, Amy⋅Strong, Amy L⋅Strong, Amy L⋅Strong, A.L.⋅Shi, Zhenzhen⋅Shi, Z.⋅Shi, Zhenzhen⋅Shi, Zhenzhen⋅Strong, Michael⋅Strong, Michael J⋅Strong, M.J.⋅Strong, Michael J⋅Miller, D.F.⋅Miller, David F⋅Miller, David F B⋅Miller, David⋅Rusch, D.B.⋅Rusch, Douglas⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Buechlein, Aaron M⋅Buechlein, A.M.⋅Buechlein, Aaron⋅Buechlein, Aaron M⋅Flemington, Erik K⋅Flemington, Erik K⋅Flemington, E.K.⋅Flemington, Erik⋅McLachlan, J.A.⋅McLachlan, John⋅McLachlan, John A⋅McLachlan, John A⋅Nephew, Kenneth⋅Nephew, Kenneth P⋅Nephew, Kenneth P⋅Nephew, K.P.⋅Burow, Matthew E⋅Burow, Matthew⋅Burow, Matthew E⋅Burow, M.E.⋅Bunnell, B.A.⋅Bunnell, Bruce A⋅Bunnell, Bruce and Bunnell, Bruce A
Environmental health perspectives, vol. 123, (no. 1), pp. 48, 2015-Jan. | Journal Article
 
Epigenome and genome alterations in platinum resistant ovarian cancer
Matei, Daniela⋅Matei, Daniela⋅Matei, Daniela⋅Fang, Fang⋅Fang, Fang⋅Fang, Fang⋅Cardenas, Horacio⋅Cardenas, Horacio⋅Cardenas, Horacio⋅Miller, David F⋅Miller, David F⋅Miller, David F⋅Buechlein, Aaron⋅Buechlein, Aaron⋅Buechlein, Aaron⋅Yu, Qing⋅Yu, Qing⋅Yu, Qing⋅Perkins, Susan M⋅Perkins, Susan M⋅Perkins, Susan M⋅Liu, Yunlong⋅Liu, Yunlong⋅Liu, Yunlong⋅Jiang, Guanglong⋅Jiang, Guanglong⋅Jiang, Guanglong⋅Taverna, Pietro⋅Taverna, Pietro⋅Taverna, Pietro⋅Keer, Harold N⋅Keer, Harold N⋅Keer, Harold N⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Nephew, Kenneth P⋅Nephew, Kenneth P and Nephew, Kenneth P
Journal of Clinical Oncology, vol. 33, (no. 15_suppl), pp. 5555, 2015-05-20. | Journal Article