53 Publications (Page 1 of 3)
2024
How altricial birds respond to a heat challenge: organismal perspectives on coping with a future climate scenario
2023
Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovienii. mBio
. | Journal Article
2022
High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITS. ISME Communications
 
Transcriptome-wide analysis of pseudouridylation in Drosophila melanogaster
2021
A Hybrid Nanofiber/Paper Cell Culture Platform for Building a 3D Blood–Brain Barrier Model
Small Methods. | Journal Article
 
The polar flagellar transcriptional regulatory network in Vibrio campbellii deviates from canonical Vibrio species
Journal of Bacteriology. | Journal Article
2020
High-Resolution Phylogenetic and Population Genetic Analysis of Microbial Communities with RoC-ITS
 
Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests
Mushinski, R.M.Payne, Z.C.Raff, J.D.Craig, M.E.Pusede, S.E.Rusch, D.B.White, J.R. and Phillips, R.P.
Global Change Biology. | Journal Article
 
Probing biophysical sequence constraints within the transmembrane domains of rhodopsin by deep mutational scanning
Penn, Wesley DPenn, Wesley D.McKee, Andrew G.McKee, Andrew GKuntz, Charles PKuntz, Charles P.Woods, HopeWoods, HopeNash, VeronicaNash, VeronicaGruenhagen, Timothy CGruenhagen, Timothy C.Roushar, Francis JRoushar, Francis J.Chandak, MaheshChandak, MaheshHemmerich, ChrisHemmerich, ChrisRusch, Douglas BRusch, Douglas B.Meiler, JensMeiler, JensSchlebach, Jonathan P. and Schlebach, Jonathan P
Science Advances. | Journal Article
2019
Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota
McKay, Luke JDlakić, MensurFields, Matthew WDelmont, Tom OEren, A MuratJay, Zackary JKlingelsmith, Korinne BRusch, Douglas B and Inskeep, William P
Nature microbiology, vol. 4, (no. 4), pp. 622, 2019-04-00. | Journal Article
 
Microbial mechanisms and ecosystem flux estimation for aerobic NO y emissions from deciduous forest soils
Mushinski, Ryan MMushinski, R.M.Mushinski, Ryan M.Mushinski, RyanMushinski, Ryan MMushinski, Ryan MPhillips, R.P.Phillips, Richard PPhillips, Richard PPhillips, Richard PPhillips, Richard P.Phillips, RichardPayne, Zachary CPayne, Z.C.Payne, ZacharyPayne, Zachary C.Payne, Zachary CPayne, Zachary CAbney, Rebecca B.Abney, Rebecca BAbney, RebeccaAbney, Rebecca BAbney, Rebecca BAbney, R.B.Jo, InsuJo, I.Jo, InsuJo, InsuJo, InsuJo, InsuFei, SonglinFei, SonglinFei, SonglinFei, SonglinFei, SonglinFei, S.Pusede, Sally E.Pusede, Sally EPusede, SallyPusede, Sally EPusede, S.E.Pusede, Sally EWhite, Jeffrey RWhite, Jeffrey R.White, Jeffrey RWhite, J.R.White, Jeffrey RWhite, JeffreyRusch, Douglas BRusch, D.B.Rusch, Douglas BRusch, Douglas B.Rusch, DouglasRusch, Douglas BRaff, Jonathan DRaff, Jonathan DRaff, Jonathan DRaff, JonathanRaff, J.D. and Raff, Jonathan D.
Proceedings of the National Academy of Sciences of the United States of America, vol. 116, (no. 6), pp. 2138, 2019-02-05. | Journal Article
 
The neurogenomic transition from territory establishment to parenting in a territorial female songbird
Bentz, Alexandra BBentz, Alexandra BRusch, Douglas BRusch, Douglas BBuechlein, AaronBuechlein, AaronRosvall, Kimberly A and Rosvall, Kimberly A
BMC Genomics, vol. 20, (no. 1), pp. 819, 2019-12-00. | Journal Article
 
The potential for a released autosomal X-shredder becoming a driving-Y chromosome and invasively suppressing wild populations of malaria mosquitoes
Alcalay, YehonatanFuchs, SilkeGalizi, RobertoBernardini, FedericaHaghighat-Khah, Roya ElaineRusch, Douglas B.Adrion, Jeffrey R.Hahn, Matthew W.Tortosa, Pablo and Papathanos, Philippos Aris
Cold Spring Harbor Laboratory
2017
Complete Genome Sequence of the Pathogenic Vibrio vulnificus Type Strain ATCC 27562
Rusch, Douglas BRusch, Douglas BRowe-Magnus, Dean A and Rowe Magnus, Dean A
Genome announcements, vol. 5, (no. 35), 2017-Aug-31. | Journal Article
 
Erratum: Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Orsini, LuisaOrsini, LuisaOrsini, LuisaGilbert, DonaldGilbert, DonaldGilbert, DonaldPodicheti, RamPodicheti, RamPodicheti, RamJansen, MiekeJansen, MiekeJansen, MiekeBrown, James BBrown, James BBrown, James BSolari, Omid ShamsSolari, Omid ShamsSolari, Omid SSpanier, Katina ISpanier, Katina ISpanier, Katina IColbourne, John KColbourne, John KColbourne, John KRusch, Douglas BRusch, Douglas BRusch, Douglas BDecaestecker, EllenDecaestecker, EllenDecaestecker, EllenAsselman, JanaAsselman, JanaAsselman, JanaDe Schamphelaere, Karel ADe Schamphelaere, Karel A.CDe Schamphelaere, Karel A CEbert, DieterEbert, DieterEbert, DieterHaag, Christoph RHaag, Christoph RHaag, Christoph RKvist, JouniKvist, JouniKvist, JouniLaforsch, ChristianLaforsch, ChristianLaforsch, ChristianPetrusek, AdamPetrusek, AdamPetrusek, AdamBeckerman, Andrew PBeckerman, Andrew PBeckerman, Andrew PLittle, Tom JLittle, Tom JLittle, Tom JChaturvedi, AnuragChaturvedi, AnuragChaturvedi, AnuragPfrender, Michael EPfrender, Michael EPfrender, Michael EDe Meester, LucDe Meester, LucDe Meester, LucFrilander, Mikko JFrilander, Mikko J and Frilander, Mikko J
Scientific Data, vol. 4, (no. 1), 2017-12-00. | Journal Article
 
Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly
Llorens-Marès, TomàsLiu, ZhenfengAllen, Lisa ZeiglerRusch, Douglas BCraig, Matthew TDupont, Chris LBryant, Donald A and Casamayor, Emilio O
The ISME journal, vol. 11, (no. 1), pp. 211, 2017-01-00. | Journal Article
2016
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Orsini, LuisaOrsini, LuisaOrsini, LuisaOrsini, LuisaGilbert, DonaldGilbert, DonaldGilbert, DonaldGilbert, DonaldPodicheti, RamPodicheti, RamPodicheti, RamPodicheti, RamJansen, MiekeJansen, MiekeJansen, MiekeJansen, MiekeBrown, James BBrown, James BBrown, James BBrown, James BSolari, Omid ShamsSolari, Omid SSolari, Omid ShamsSolari, Omid ShamsSpanier, Katina ISpanier, Katina ISpanier, Katina ISpanier, Katina IColbourne, John KColbourne, John KColbourne, John KColbourne, John KRush, DouglasRusch, Douglas BRusch, Douglas BRush, DouglasDecaestecker, EllenDecaestecker, EllenDecaestecker, EllenDecaestecker, EllenAsselman, JanaAsselman, JanaAsselman, JanaAsselman, JanaDe Schamphelaere, Karel ADe Schamphelaere, Karel A CDe Schamphelaere, Karel A.CDe Schamphelaere, Karel A CEbert, DieterEbert, DieterEbert, DieterEbert, DieterHaag, Christoph RHaag, Christoph RHaag, Christoph RHaag, Christoph RKvist, JouniKvist, JouniKvist, JouniKvist, JouniLaforsch, ChristianLaforsch, ChristianLaforsch, ChristianLaforsch, ChristianPetrusek, AdamPetrusek, AdamPetrusek, AdamPetrusek, AdamBeckerman, Andrew PBeckerman, Andrew PBeckerman, Andrew PBeckerman, Andrew PLittle, Tom JLittle, Tom JLittle, Tom JLittle, Tom JChaturvedi, AnuragChaturvedi, AnuragChaturvedi, AnuragChaturvedi, AnuragPfrender, Michael EPfrender, Michael EPfrender, Michael EPfrender, Michael EDe Meester, LucDe Meester, LucDe Meester, LucDe Meester, LucFrilander, Mikko JFrilander, Mikko JFrilander, Mikko J and Frilander, Mikko J
Scientific Data, vol. 3, (no. 1), pp. 160030, 2016-12-00. | Journal Article
 
Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community
Díez, BeatrizNylander, Johan A. AIninbergs, KarolinaDupont, Christopher LAllen, Andrew EYooseph, ShibuRusch, Douglas B and Bergman, Birgitta
PLoS ONE, vol. 11, (no. 5), 2016. | Journal Article
 
Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution
Díez, BeatrizDíez, BeatrizNylander, Johan A ANylander, JohanIninbergs, KarolinaIninbergs, KarolinaDupont, ChristopherDupont, Christopher LAllen, AndrewAllen, Andrew EYooseph, ShibuYooseph, ShibuRusch, Douglas BRusch, DouglasBergman, Birgitta and Bergman, Birgitta
PloS one, vol. 11, (no. 5), pp. e0155757, 2016-00-00. | Journal Article
 
Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring Metagenomes
Colman, Daniel RJay, Zackary JInskeep, William PJennings, Ryan DemMaas, Kendra RRusch, Douglas B and Takacs-Vesbach, Cristina D
Frontiers in Microbiology, vol. 7, 2016-03-01. | Journal Article
 
The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park
Jay, Zackary JBeam, Jacob PKozubal, Mark AJennings, Ryan deMRusch, Douglas B and Inskeep, William P
Environmental Microbiology, vol. 18, (no. 12), pp. 4769, 2016-12-00. | Journal Article
2015
Dual regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in triple-negative breast cancer
Rhodes, Lyndsay VRhodes, Lyndsay VMartin, Elizabeth CMartin, Elizabeth CSegar, H. ChrisSegar, H ChrisMiller, David F BMiller, David F. BBuechlein, AaronBuechlein, AaronRusch, Douglas BRusch, Douglas BNephew, Kenneth PNephew, Kenneth PBurow, Matthew EBurow, Matthew ECollins-Burow, Bridgette M and Collins-Burow, Bridgette M
Oncotarget, vol. 6, (no. 18), pp. 16652, 2015-06-30. | Journal Article
 
Effects of the Endocrine-Disrupting Chemical DDT on Self-Renewal and Differentiation of Human Mesenchymal Stem Cells
Strong, AmyStrong, Amy LStrong, Amy LStrong, A.L.Shi, ZhenzhenShi, Z.Shi, ZhenzhenShi, ZhenzhenStrong, MichaelStrong, Michael JStrong, M.J.Strong, Michael JMiller, D.F.Miller, David FMiller, David F BMiller, DavidRusch, D.B.Rusch, DouglasRusch, Douglas BRusch, Douglas BBuechlein, Aaron MBuechlein, A.M.Buechlein, AaronBuechlein, Aaron MFlemington, Erik KFlemington, Erik KFlemington, E.K.Flemington, ErikMcLachlan, J.A.McLachlan, JohnMcLachlan, John AMcLachlan, John ANephew, KennethNephew, Kenneth PNephew, Kenneth PNephew, K.P.Burow, Matthew EBurow, MatthewBurow, Matthew EBurow, M.E.Bunnell, B.A.Bunnell, Bruce ABunnell, Bruce and Bunnell, Bruce A
Environmental health perspectives, vol. 123, (no. 1), pp. 48, 2015-Jan. | Journal Article
 
Epigenome and genome alterations in platinum resistant ovarian cancer
Matei, DanielaMatei, DanielaMatei, DanielaFang, FangFang, FangFang, FangCardenas, HoracioCardenas, HoracioCardenas, HoracioMiller, David FMiller, David FMiller, David FBuechlein, AaronBuechlein, AaronBuechlein, AaronYu, QingYu, QingYu, QingPerkins, Susan MPerkins, Susan MPerkins, Susan MLiu, YunlongLiu, YunlongLiu, YunlongJiang, GuanglongJiang, GuanglongJiang, GuanglongTaverna, PietroTaverna, PietroTaverna, PietroKeer, Harold NKeer, Harold NKeer, Harold NRusch, Douglas BRusch, Douglas BRusch, Douglas BNephew, Kenneth PNephew, Kenneth P and Nephew, Kenneth P
Journal of Clinical Oncology, vol. 33, (no. 15_suppl), pp. 5555, 2015-05-20. | Journal Article
 
Saccharide breakdown and fermentation by the honey bee gut microbiome
Lee, Fredrick JLee, Fredrick JRusch, Douglas BRusch, Douglas BStewart, Frank JStewart, Frank JMattila, Heather RMattila, Heather RNewton, Irene L. G and Newton, Irene L G
Environmental Microbiology, vol. 17, (no. 3), pp. 815, March 2015. | Journal Article