53 Publications (Page 1 of 3)
2024
How altricial birds respond to a heat challenge: organismal perspectives on coping with a future climate scenario
2023
Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovienii. mBio
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2022
High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITS. ISME Communications
Transcriptome-wide analysis of pseudouridylation in Drosophila melanogaster
2021
A Hybrid Nanofiber/Paper Cell Culture Platform for Building a 3D Blood–Brain Barrier Model
Small Methods. | Journal Article
The polar flagellar transcriptional regulatory network in Vibrio campbellii deviates from canonical Vibrio species
Journal of Bacteriology. | Journal Article
2020
High-Resolution Phylogenetic and Population Genetic Analysis of Microbial Communities with RoC-ITS
Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forestsMushinski, R.M.⋅Payne, Z.C.⋅Raff, J.D.⋅Craig, M.E.⋅Pusede, S.E.⋅Rusch, D.B.⋅White, J.R. and Phillips, R.P.Global Change Biology.
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Probing biophysical sequence constraints within the transmembrane domains of rhodopsin by deep mutational scanningPenn, Wesley D⋅Penn, Wesley D.⋅McKee, Andrew G.⋅McKee, Andrew G⋅Kuntz, Charles P⋅Kuntz, Charles P.⋅Woods, Hope⋅Woods, Hope⋅Nash, Veronica⋅Nash, Veronica⋅Gruenhagen, Timothy C⋅Gruenhagen, Timothy C.⋅Roushar, Francis J⋅Roushar, Francis J.⋅Chandak, Mahesh⋅Chandak, Mahesh⋅Hemmerich, Chris⋅Hemmerich, Chris⋅Rusch, Douglas B⋅Rusch, Douglas B.⋅Meiler, Jens⋅Meiler, Jens⋅Schlebach, Jonathan P. and Schlebach, Jonathan PScience Advances.
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2019
Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the KorarchaeotaMcKay, Luke J⋅Dlakić, Mensur⋅Fields, Matthew W⋅Delmont, Tom O⋅Eren, A Murat⋅Jay, Zackary J⋅Klingelsmith, Korinne B⋅Rusch, Douglas B and Inskeep, William PNature microbiology, vol. 4, (no. 4), pp. 622, 2019-04-00.
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Microbial mechanisms and ecosystem flux estimation for aerobic NO y emissions from deciduous forest soilsMushinski, Ryan M⋅Mushinski, R.M.⋅Mushinski, Ryan M.⋅Mushinski, Ryan⋅Mushinski, Ryan M⋅Mushinski, Ryan M⋅Phillips, R.P.⋅Phillips, Richard P⋅Phillips, Richard P⋅Phillips, Richard P⋅Phillips, Richard P.⋅Phillips, Richard⋅Payne, Zachary C⋅Payne, Z.C.⋅Payne, Zachary⋅Payne, Zachary C.⋅Payne, Zachary C⋅Payne, Zachary C⋅Abney, Rebecca B.⋅Abney, Rebecca B⋅Abney, Rebecca⋅Abney, Rebecca B⋅Abney, Rebecca B⋅Abney, R.B.⋅Jo, Insu⋅Jo, I.⋅Jo, Insu⋅Jo, Insu⋅Jo, Insu⋅Jo, Insu⋅Fei, Songlin⋅Fei, Songlin⋅Fei, Songlin⋅Fei, Songlin⋅Fei, Songlin⋅Fei, S.⋅Pusede, Sally E.⋅Pusede, Sally E⋅Pusede, Sally⋅Pusede, Sally E⋅Pusede, S.E.⋅Pusede, Sally E⋅White, Jeffrey R⋅White, Jeffrey R.⋅White, Jeffrey R⋅White, J.R.⋅White, Jeffrey R⋅White, Jeffrey⋅Rusch, Douglas B⋅Rusch, D.B.⋅Rusch, Douglas B⋅Rusch, Douglas B.⋅Rusch, Douglas⋅Rusch, Douglas B⋅Raff, Jonathan D⋅Raff, Jonathan D⋅Raff, Jonathan D⋅Raff, Jonathan⋅Raff, J.D. and Raff, Jonathan D.Proceedings of the National Academy of Sciences of the United States of America, vol. 116, (no. 6), pp. 2138, 2019-02-05.
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The neurogenomic transition from territory establishment to parenting in a territorial female songbirdBentz, Alexandra B⋅Bentz, Alexandra B⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Buechlein, Aaron⋅Buechlein, Aaron⋅Rosvall, Kimberly A and Rosvall, Kimberly ABMC Genomics, vol. 20, (no. 1), pp. 819, 2019-12-00.
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The potential for a released autosomal X-shredder becoming a driving-Y chromosome and invasively suppressing wild populations of malaria mosquitoesAlcalay, Yehonatan⋅Fuchs, Silke⋅Galizi, Roberto⋅Bernardini, Federica⋅Haghighat-Khah, Roya Elaine⋅Rusch, Douglas B.⋅Adrion, Jeffrey R.⋅Hahn, Matthew W.⋅Tortosa, Pablo and Papathanos, Philippos ArisCold Spring Harbor Laboratory
2017
Complete Genome Sequence of the Pathogenic Vibrio vulnificus Type Strain ATCC 27562Rusch, Douglas B⋅Rusch, Douglas B⋅Rowe-Magnus, Dean A and Rowe Magnus, Dean AGenome announcements, vol. 5, (no. 35), 2017-Aug-31.
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Erratum: Daphnia magna transcriptome by RNA-Seq across 12 environmental stressorsOrsini, Luisa⋅Orsini, Luisa⋅Orsini, Luisa⋅Gilbert, Donald⋅Gilbert, Donald⋅Gilbert, Donald⋅Podicheti, Ram⋅Podicheti, Ram⋅Podicheti, Ram⋅Jansen, Mieke⋅Jansen, Mieke⋅Jansen, Mieke⋅Brown, James B⋅Brown, James B⋅Brown, James B⋅Solari, Omid Shams⋅Solari, Omid Shams⋅Solari, Omid S⋅Spanier, Katina I⋅Spanier, Katina I⋅Spanier, Katina I⋅Colbourne, John K⋅Colbourne, John K⋅Colbourne, John K⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Asselman, Jana⋅Asselman, Jana⋅Asselman, Jana⋅De Schamphelaere, Karel A⋅De Schamphelaere, Karel A.C⋅De Schamphelaere, Karel A C⋅Ebert, Dieter⋅Ebert, Dieter⋅Ebert, Dieter⋅Haag, Christoph R⋅Haag, Christoph R⋅Haag, Christoph R⋅Kvist, Jouni⋅Kvist, Jouni⋅Kvist, Jouni⋅Laforsch, Christian⋅Laforsch, Christian⋅Laforsch, Christian⋅Petrusek, Adam⋅Petrusek, Adam⋅Petrusek, Adam⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Little, Tom J⋅Little, Tom J⋅Little, Tom J⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Pfrender, Michael E⋅Pfrender, Michael E⋅Pfrender, Michael E⋅De Meester, Luc⋅De Meester, Luc⋅De Meester, Luc⋅Frilander, Mikko J⋅Frilander, Mikko J and Frilander, Mikko JScientific Data, vol. 4, (no. 1), 2017-12-00.
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Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assemblyLlorens-Marès, Tomàs⋅Liu, Zhenfeng⋅Allen, Lisa Zeigler⋅Rusch, Douglas B⋅Craig, Matthew T⋅Dupont, Chris L⋅Bryant, Donald A and Casamayor, Emilio OThe ISME journal, vol. 11, (no. 1), pp. 211, 2017-01-00.
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2016
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressorsOrsini, Luisa⋅Orsini, Luisa⋅Orsini, Luisa⋅Orsini, Luisa⋅Gilbert, Donald⋅Gilbert, Donald⋅Gilbert, Donald⋅Gilbert, Donald⋅Podicheti, Ram⋅Podicheti, Ram⋅Podicheti, Ram⋅Podicheti, Ram⋅Jansen, Mieke⋅Jansen, Mieke⋅Jansen, Mieke⋅Jansen, Mieke⋅Brown, James B⋅Brown, James B⋅Brown, James B⋅Brown, James B⋅Solari, Omid Shams⋅Solari, Omid S⋅Solari, Omid Shams⋅Solari, Omid Shams⋅Spanier, Katina I⋅Spanier, Katina I⋅Spanier, Katina I⋅Spanier, Katina I⋅Colbourne, John K⋅Colbourne, John K⋅Colbourne, John K⋅Colbourne, John K⋅Rush, Douglas⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Rush, Douglas⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Decaestecker, Ellen⋅Asselman, Jana⋅Asselman, Jana⋅Asselman, Jana⋅Asselman, Jana⋅De Schamphelaere, Karel A⋅De Schamphelaere, Karel A C⋅De Schamphelaere, Karel A.C⋅De Schamphelaere, Karel A C⋅Ebert, Dieter⋅Ebert, Dieter⋅Ebert, Dieter⋅Ebert, Dieter⋅Haag, Christoph R⋅Haag, Christoph R⋅Haag, Christoph R⋅Haag, Christoph R⋅Kvist, Jouni⋅Kvist, Jouni⋅Kvist, Jouni⋅Kvist, Jouni⋅Laforsch, Christian⋅Laforsch, Christian⋅Laforsch, Christian⋅Laforsch, Christian⋅Petrusek, Adam⋅Petrusek, Adam⋅Petrusek, Adam⋅Petrusek, Adam⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Beckerman, Andrew P⋅Little, Tom J⋅Little, Tom J⋅Little, Tom J⋅Little, Tom J⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Chaturvedi, Anurag⋅Pfrender, Michael E⋅Pfrender, Michael E⋅Pfrender, Michael E⋅Pfrender, Michael E⋅De Meester, Luc⋅De Meester, Luc⋅De Meester, Luc⋅De Meester, Luc⋅Frilander, Mikko J⋅Frilander, Mikko J⋅Frilander, Mikko J and Frilander, Mikko JScientific Data, vol. 3, (no. 1), pp. 160030, 2016-12-00.
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Metagenomic Analysis of the Indian Ocean Picocyanobacterial CommunityDíez, Beatriz⋅Nylander, Johan A. A⋅Ininbergs, Karolina⋅Dupont, Christopher L⋅Allen, Andrew E⋅Yooseph, Shibu⋅Rusch, Douglas B and Bergman, BirgittaPLoS ONE, vol. 11, (no. 5), 2016.
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Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and EvolutionDíez, Beatriz⋅Díez, Beatriz⋅Nylander, Johan A A⋅Nylander, Johan⋅Ininbergs, Karolina⋅Ininbergs, Karolina⋅Dupont, Christopher⋅Dupont, Christopher L⋅Allen, Andrew⋅Allen, Andrew E⋅Yooseph, Shibu⋅Yooseph, Shibu⋅Rusch, Douglas B⋅Rusch, Douglas⋅Bergman, Birgitta and Bergman, BirgittaPloS one, vol. 11, (no. 5), pp. e0155757, 2016-00-00.
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Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring MetagenomesColman, Daniel R⋅Jay, Zackary J⋅Inskeep, William P⋅Jennings, Ryan Dem⋅Maas, Kendra R⋅Rusch, Douglas B and Takacs-Vesbach, Cristina DFrontiers in Microbiology, vol. 7, 2016-03-01.
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The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National ParkJay, Zackary J⋅Beam, Jacob P⋅Kozubal, Mark A⋅Jennings, Ryan deM⋅Rusch, Douglas B and Inskeep, William PEnvironmental Microbiology, vol. 18, (no. 12), pp. 4769, 2016-12-00.
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2015
Dual regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in triple-negative breast cancerRhodes, Lyndsay V⋅Rhodes, Lyndsay V⋅Martin, Elizabeth C⋅Martin, Elizabeth C⋅Segar, H. Chris⋅Segar, H Chris⋅Miller, David F B⋅Miller, David F. B⋅Buechlein, Aaron⋅Buechlein, Aaron⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Nephew, Kenneth P⋅Nephew, Kenneth P⋅Burow, Matthew E⋅Burow, Matthew E⋅Collins-Burow, Bridgette M and Collins-Burow, Bridgette MOncotarget, vol. 6, (no. 18), pp. 16652, 2015-06-30.
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Effects of the Endocrine-Disrupting Chemical DDT on Self-Renewal and Differentiation of Human Mesenchymal Stem CellsStrong, Amy⋅Strong, Amy L⋅Strong, Amy L⋅Strong, A.L.⋅Shi, Zhenzhen⋅Shi, Z.⋅Shi, Zhenzhen⋅Shi, Zhenzhen⋅Strong, Michael⋅Strong, Michael J⋅Strong, M.J.⋅Strong, Michael J⋅Miller, D.F.⋅Miller, David F⋅Miller, David F B⋅Miller, David⋅Rusch, D.B.⋅Rusch, Douglas⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Buechlein, Aaron M⋅Buechlein, A.M.⋅Buechlein, Aaron⋅Buechlein, Aaron M⋅Flemington, Erik K⋅Flemington, Erik K⋅Flemington, E.K.⋅Flemington, Erik⋅McLachlan, J.A.⋅McLachlan, John⋅McLachlan, John A⋅McLachlan, John A⋅Nephew, Kenneth⋅Nephew, Kenneth P⋅Nephew, Kenneth P⋅Nephew, K.P.⋅Burow, Matthew E⋅Burow, Matthew⋅Burow, Matthew E⋅Burow, M.E.⋅Bunnell, B.A.⋅Bunnell, Bruce A⋅Bunnell, Bruce and Bunnell, Bruce AEnvironmental health perspectives, vol. 123, (no. 1), pp. 48, 2015-Jan.
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Epigenome and genome alterations in platinum resistant ovarian cancerMatei, Daniela⋅Matei, Daniela⋅Matei, Daniela⋅Fang, Fang⋅Fang, Fang⋅Fang, Fang⋅Cardenas, Horacio⋅Cardenas, Horacio⋅Cardenas, Horacio⋅Miller, David F⋅Miller, David F⋅Miller, David F⋅Buechlein, Aaron⋅Buechlein, Aaron⋅Buechlein, Aaron⋅Yu, Qing⋅Yu, Qing⋅Yu, Qing⋅Perkins, Susan M⋅Perkins, Susan M⋅Perkins, Susan M⋅Liu, Yunlong⋅Liu, Yunlong⋅Liu, Yunlong⋅Jiang, Guanglong⋅Jiang, Guanglong⋅Jiang, Guanglong⋅Taverna, Pietro⋅Taverna, Pietro⋅Taverna, Pietro⋅Keer, Harold N⋅Keer, Harold N⋅Keer, Harold N⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Nephew, Kenneth P⋅Nephew, Kenneth P and Nephew, Kenneth PJournal of Clinical Oncology, vol. 33, (no. 15_suppl), pp. 5555, 2015-05-20.
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Saccharide breakdown and fermentation by the honey bee gut microbiomeLee, Fredrick J⋅Lee, Fredrick J⋅Rusch, Douglas B⋅Rusch, Douglas B⋅Stewart, Frank J⋅Stewart, Frank J⋅Mattila, Heather R⋅Mattila, Heather R⋅Newton, Irene L. G and Newton, Irene L GEnvironmental Microbiology, vol. 17, (no. 3), pp. 815, March 2015.
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