23 Publications
2021
Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline
Ferkowicz, Michael JFerkowicz, Michael JFerkowicz, Michael JFerkowicz, Michael JFerkowicz, Michael JWinfree, SethWinfree, SethWinfree, SethWinfree, SethSabo, Angela RSabo, Angela RSabo, Angela RSabo, Angela RSabo, Angela RKamocka, Malgorzata MKamocka, Malgorzata MKamocka, Malgorzata MKamocka, Malgorzata MKhochare, SurajBarwinska, DariaEadon, Michael TEadon, Michael TEadon, Michael TEadon, Michael TYing-Hua, ChengYing-Hua, ChengYing-Hua, ChengYing-Hua, ChengPhillips, Carrie LPhillips, Carrie LPhillips, Carrie LPhillips, Carrie LPhillips, Carrie LSutton, Timothy ASutton, Timothy ASutton, Timothy ASutton, Timothy ASutton, Timothy AKelly, Katherine JKelly, Katherine JKelly, Katherine JKelly, Katherine JDagher, Pierre CDagher, Pierre CDagher, Pierre CDagher, Pierre CEl-Achkar, Tarek MEl-Achkar, Tarek MEl-Achkar, Tarek MEl-Achkar, Tarek MEl-Achkar, Tarek MDunn, Kenneth WDunn, Kenneth WDunn, Kenneth WDunn, Kenneth WDunn, Kenneth WDunn, Kenneth WKnight, RichardDunn, Kenneth WDunn, Kenneth WDunn, Kenneth WKnight, RichardKnight, RichardLecker, StewartKnight, RichardKnight, RichardStillman, IsaacStillman, IsaacMcmahon, GearoidStillman, IsaacStillman, IsaacStillman, IsaacHacohen, NirHoover, PaulHoover, PaulHoover, PaulHoover, PaulAulisio, MarkHoover, PaulAulisio, MarkAulisio, MarkCooperman, LeslieAulisio, MarkAulisio, MarkCooperman, LeslieCooperman, LeslieCooperman, LeslieCooperman, LeslieLeal, HerlitzLeal, HerlitzO'toole, JohnLeal, HerlitzLeal, HerlitzPoggio, EmilioSedor, JohnAppelbaum, PaulSedor, JohnSedor, JohnSedor, JohnAppelbaum, PaulAppelbaum, PaulBarasch, JonathanAppelbaum, PaulAppelbaum, PaulBarasch, JonathanBarasch, JonathanBarasch, JonathanBomback, AndrewBarasch, JonathanBomback, AndrewBomback, AndrewBomback, AndrewBomback, AndrewKiryluk, KrzysztofMehl, KarlaShang, Ning SunnyMehl, KarlaMehl, KarlaMehl, KarlaMehl, KarlaWeng, ChenhuaBarisoni, LauraBarisoni, LauraBarisoni, LauraBarisoni, LauraBarisoni, LauraAlexandrov, TheodoreAshkar, TarekAlexandrov, TheodoreAlexandrov, TheodoreAlexandrov, TheodoreBarwinska, DariaDagher, PierreDagher, PierreDagher, PierreDagher, PierreDunn, KennethDunn, KennethDunn, KennethDunn, KennethDunn, KennethEadon, MichaelEadon, MichaelEadon, MichaelEadon, MichaelFerkowicz, MichaelEadon, MichaelFerkowicz, MichaelFerkowicz, MichaelKelly, KatherineFerkowicz, MichaelFerkowicz, MichaelKelly, KatherineSutton, TimothyKelly, KatherineKelly, KatherineKelly, KatherineSutton, TimothySutton, TimothySutton, TimothySutton, TimothyWinfree, SethWinfree, SethWinfree, SethWinfree, SethMenez, StevenMenez, StevenMenez, StevenMenez, StevenRosenberg, AviRosenberg, AviVillalobos, PamRosenberg, AviRosenberg, AviRosenberg, AviVillalobos, PamVillalobos, PamVillalobos, PamVillalobos, PamSlack, AlisonRosas, SylviaSlack, AlisonSlack, AlisonSlack, AlisonRosas, SylviaRosas, SylviaRosas, SylviaRosas, SylviaWilliams, MarkWilliams, MarkAzeloglu, EvrenWilliams, MarkWilliams, MarkHe, Cijang JohnIyengar, RaviIyengar, RaviIyengar, RaviIyengar, RaviParikh, SamirAnderton, ChrisAnderton, ChrisAnderton, ChrisAnderton, ChrisAnderton, ChrisVelickovic, DusanOliver, George HoltOliver, GeorgeOliver, GeorgeOliver, GeorgeArdayfio, JosephOliver, GeorgeBebiak, JackArdayfio, JosephArdayfio, JosephArdayfio, JosephArdayfio, JosephBrown, KeithBrown, KeithBrown, KeithCampbell, TaneishaBrown, KeithCampbell, TaneishaCampbell, CatherineCampbell, TaneishaCampbell, TaneishaCampbell, TaneishaCampbell, CatherineCampbell, CatherineHayashi, LyndaCampbell, CatherineCampbell, CatherineHayashi, LyndaHayashi, LyndaJefferson, NicholeHayashi, LyndaHayashi, LyndaJefferson, NicholeJefferson, NicholeJefferson, NicholeJefferson, NicholeKoewler, RobertKoewler, RobertKoewler, RobertKoewler, RobertSaul, JohnRoberts, GlendaRoberts, GlendaRoberts, GlendaRoberts, GlendaSaul, JohnSaul, JohnSaul, JohnSaul, JohnShpigel, AnnaShpigel, AnnaShpigel, AnnaShpigel, AnnaStutzke, Edith ChristineStutzke, Edith CStutzke, Edith CStutzke, Edith CStutzke, Edith CWright, LorendaWright, LorendaWright, LorendaMiegs, LeslieWright, LorendaWright, LorendaPinkeney, RoySealfon, RachelTroyanskaya, OlgaTuttle, KatherineTuttle, KatherineTuttle, KatherineTuttle, KatherineGoltsev, YuryTuttle, KatherineLake, BlueZhang, KunZhang, KunZhang, KunZhang, KunDobi, DejanZhang, KunJoanes, MariaJoanes, MariaJoanes, MariaJoanes, MariaJoanes, MariaNolan, GarrySchroeder, AndrewNolan, GarryNolan, GarryNolan, GarryNolan, GarrySchroeder, AndrewSchroeder, AndrewSchroeder, AndrewSchroeder, AndrewHe, OliverHe, OliverHodgin, JeffreyHe, OliverHe, OliverHe, OliverHodgin, JeffreyHodgin, JeffreyHodgin, JeffreyHodgin, JeffreyMariani, LauraMariani, LauraMariani, LauraMenon, RajasreeMariani, LauraMariani, LauraOtto, EdgarOtto, EdgarOtto, EdgarOtto, EdgarOtto, EdgarSchaub, JenniferSchaub, JenniferSchaub, JenniferSchaub, JenniferSteck, BeckySteck, BeckyElder, MicheleSteck, BeckySteck, BeckySteck, BeckyElder, MicheleHall, DanielElder, MicheleElder, MicheleElder, MicheleHall, DanielHall, DanielKellum, JohnHall, DanielHall, DanielKellum, JohnKellum, JohnKellum, JohnKellum, JohnMurugan, RaghavKruth, MaryKruth, MaryKruth, MaryKruth, MaryPalevsky, PaulPalevsky, PaulPalevsky, PaulPalevsky, PaulRandhawa, ParmjeetPalevsky, PaulRosengart, MatthewRosengart, MatthewRosengart, MatthewRosengart, MatthewRosengart, MatthewSims-Lucas, SunnySims-Lucas, SunnySims-Lucas, SunnySims-Lucas, SunnyStefanick, MarySims-Lucas, SunnyStefanick, MaryStull, StacyStefanick, MaryStefanick, MaryStefanick, MaryStull, StacyStull, StacyTublin, MitchellStull, StacyStull, StacyAlpers, CharlesAlpers, CharlesAlpers, CharlesAlpers, CharlesBoer, Ian DeBoer, Ian DBoer, Ian DBoer, Ian DBoer, Ian DHimmelfarb, JonathanHimmelfarb, JonathanHimmelfarb, JonathanHimmelfarb, JonathanHimmelfarb, JonathanMcclelland, RobynMcclelland, RobynMcclelland, RobynMcclelland, RobynMooney, SeanMooney, SeanMooney, SeanMooney, SeanShankland, StuartShankland, StuartWilliams, KayleenShankland, StuartShankland, StuartWilliams, KayleenWilliams, KayleenWilliams, KayleenWilliams, KayleenBlank, KristinaBlank, KristinaBlank, KristinaBlank, KristinaDighe, AshveenaBlank, KristinaCarson, JonasCarson, JonasCarson, JonasDowd, FrederickCarson, JonasCarson, JonasDowd, FrederickDowd, FrederickDowd, FrederickDowd, FrederickSharma, KumarSharma, KumarSharma, KumarSharma, KumarSharma, KumarZhang, GuanshiKermani, AsraLee, SimonLee, SimonLee, SimonLee, SimonLee, SimonLu, ChristopherLu, ChristopherLu, ChristopherLu, ChristopherMiller, TylerMoe, OrsonMiller, TylerMiller, TylerMiller, TylerPark, HaroldPark, HaroldPark, HaroldPark, HaroldPark, HaroldSanchez, FranciscoSanchez, FranciscoTorrealba, JoseSanchez, FranciscoSanchez, FranciscoTorrealba, JoseRobert, TotoTorrealba, JoseTorrealba, JoseTorrealba, JoseToto, RobertToto, RobertToto, RobertToto, RobertVazquez, MiguelVazquez, MiguelWang, NancyVazquez, MiguelVazquez, MiguelWang, NancyWang, NancyWang, NancyWang, NancyGaut, JoeGaut, JoeGaut, JoeJain, SanjayGaut, JoeJain, SanjayVijayan, AnithaJain, SanjayJain, SanjayJain, SanjayLuciano, RandyLuciano, RandyLuciano, RandyMoledina, DennisLuciano, RandyWilson, Francis PerryUgwuowo, UgochukwuUgwuowo, UgochukwuUgwuowo, Ugochukwu and Ugwuowo, Ugochukwu
Laboratory Investigation, vol. 101, (no. 5), pp. 661-676, May 2021. | Journal Article
 
Quantitative 3-dimensional imaging and tissue cytometry reveals lymphatic expansion in acute kidney injury
Black, Laurence MBlack, Laurence MBlack, Laurence MWinfree, SethWinfree, SethWinfree, SethKhochare, Suraj DKhochare, Suraj DKhochare, Suraj DKamocka, Malgorzata MKamocka, Malgorzata MKamocka, Malgorzata MTraylor, Amie MTraylor, Amie MTraylor, Amie MEsman, Stephanie KEsman, Stephanie KEsman, Stephanie KKhan, ShehnazKhan, ShehnazZarjou, AbolfazlZarjou, AbolfazlAgarwal, AnupamAgarwal, AnupamEl-Achkar, Tarek MEl-Achkar, Tarek M and El-Achkar, Tarek M
Laboratory Investigation, vol. 101, (no. 9), pp. 1186-1196, Sep 2021. | Journal Article
2018
Blocking HIF signaling via novel inhibitors of CA9 and APE1/Ref-1 dramatically affects pancreatic cancer cell survival
Logsdon, Derek PLogsdon, Derek PLogsdon, Derek PLogsdon, Derek PShah, FenilShah, FenilShah, FenilShah, FenilCarta, FabrizioCarta, FabrizioCarta, FabrizioCarta, FabrizioSupuran, Claudiu TSupuran, Claudiu TSupuran, Claudiu TSupuran, Claudiu TKamocka, MalgorzataKamocka, MalgorzataKamocka, MalgorzataKamocka, MalgorzataJacobsen, Max HJacobsen, Max HJacobsen, Max HJacobsen, Max HSandusky, George ESandusky, George ESandusky, George ESandusky, George EKelley, Mark RKelley, Mark RKelley, Mark RKelley, Mark RFishel, Melissa LFishel, Melissa LFishel, Melissa L and Fishel, Melissa L
Scientific Reports (Nature Publisher Group), vol. 8, pp. 1-14, Sep 2018. | Journal Article
2017
Combining Intravital Fluorescent Microscopy (IVFM) with Genetic Models to Study Engraftment Dynamics of Hematopoietic Cells to Bone Marrow Niches.
Wang, LinKamocka, Malgorzata MZollman, Amy and Carlesso, Nadia
Journal of visualized experiments : JoVE, (no. 121), March 21, 2017. | Journal Article
 
Neuropeptide Y regulates a vascular gateway for hematopoietic stem and progenitor cells
Singh, PratibhaSingh, PratibhaSingh, PratibhaSingh, PratibhaSingh, PratibhaSingh, PratibhaHoggatt, JonathanHoggatt, JonathanHoggatt, JonathanHoggatt, JonathanHoggatt, JonathanHoggatt, JonathanKamocka, Malgorzata MKamocka, Malgorzata MKamocka, Malgorzata MKamocka, Malgorzata MKamocka, Malgorzata MKamocka, Malgorzata MMohammad, Khalid SMohammad, Khalid SMohammad, Khalid SMohammad, Khalid SMohammad, Khalid SMohammad, Khalid SSaunders, Mary RSaunders, Mary RSaunders, Mary RSaunders, Mary RSaunders, Mary RSaunders, Mary RLi, HonggeLi, HonggeLi, HonggeLi, HonggeLi, HonggeLi, HonggeSpeth, JenniferSpeth, JenniferSpeth, JenniferSpeth, JenniferSpeth, JenniferSpeth, JenniferCarlesso, NadiaCarlesso, NadiaCarlesso, NadiaCarlesso, NadiaCarlesso, NadiaCarlesso, NadiaGuise, Theresa AGuise, Theresa AGuise, Theresa AGuise, Theresa AGuise, Theresa AGuise, Theresa APelus, Louis MPelus, Louis MPelus, Louis MPelus, Louis MPelus, Louis M and Pelus, Louis M
Journal of Clinical Investigation, vol. 127, (no. 12), pp. 4527-4540, Dec 2017. | Journal Article
2016
Applying Small Molecule Signal Transducer and Activator of Transcription-3 (STAT3) Protein Inhibitors as Pancreatic Cancer Therapeutics.
Arpin, Carolyn CArpin, Carolyn CArpin, Carolyn CMac, StephenMac, StephenMac, StephenJiang, YanlinJiang, YanlinJiang, YanlinCheng, HuiwenCheng, HuiwenCheng, HuiwenGrimard, MichelleGrimard, MichelleGrimard, MichellePage, Brent D GPage, Brent D GPage, Brent D GKamocka, Malgorzata MKamocka, Malgorzata MKamocka, Malgorzata MHaftchenary, SinaHaftchenary, SinaHaftchenary, SinaSu, HanSu, HanSu, HanBall, Daniel PBall, Daniel PBall, Daniel PRosa, David ARosa, David ARosa, David ALai, Ping-ShanLai, Ping-ShanLai, Ping-ShanGómez-Biagi, Rodolfo FGómez-Biagi, Rodolfo FGómez-Biagi, Rodolfo FAli, Ahmed MAli, Ahmed MAli, Ahmed MRana, RahulRana, RahulRana, RahulHanenberg, HelmutHanenberg, HelmutHanenberg, HelmutKerman, KaganKerman, KaganKerman, KaganMcElyea, Kyle CMcElyea, Kyle CMcElyea, Kyle CSandusky, George ESandusky, George ESandusky, George EGunning, Patrick TGunning, Patrick TGunning, Patrick TFishel, Melissa LFishel, Melissa L and Fishel, Melissa L
Molecular cancer therapeutics, vol. 15, (no. 5), pp. 794-805, May 2016. | Journal Article
 
Triple Antibiotic Polymer Nanofibers for Intracanal Drug Delivery: Effects on Dual Species Biofilm and Cell Function.
Pankajakshan, DivyaPankajakshan, D.Albuquerque, M.T.P.Albuquerque, Maria T PEvans, Joshua DEvans, J.D.Kamocka, Malgorzata MKamocka, M.M.Gregory, Richard LGregory, R.L.Bottino, M.C. and Bottino, Marco C
Journal of endodontics, vol. 42, (no. 10), pp. 1490-1495, October 2016. | Journal Article
2015
Antimicrobial Effects of Novel Triple Antibiotic Paste-Mimic Scaffolds on Actinomyces naeslundii Biofilm.
Albuquerque, M.T.P.Albuquerque, Maria T PAlbuquerque, M.T.P.Ryan, S.J.Ryan, Stuart JRyan, S.J.Münchow, E.A.Münchow, Eliseu AMünchow, E.A.Kamocka, Maria MKamocka, M.M.Kamocka, M.M.Gregory, Richard LGregory, R.L.Gregory, R.L.Valera, M.C.Valera, M.C.Valera, Marcia CBottino, M.C.Bottino, Marco C and Bottino, M.C.
Journal of endodontics, vol. 41, (no. 8), pp. 1337-1343, August 2015. | Journal Article
 
Improved Structure and Function in Autosomal Recessive Polycystic Rat Kidneys with Renal Tubular Cell Therapy.
Kelly, K JZhang, JizhongHan, LingKamocka, MalgorzataMiller, CarolineGattone, Vincent H and Dominguez, Jesus H
PloS one, vol. 10, (no. 7), pp. e0131677, 2015. | Journal Article
 
Scavenger receptor class B, type I-mediated uptake of A1AT by pulmonary endothelial cells.
Lockett, Angelia DLockett, Angelia DPetrusca, Daniela NPetrusca, Daniela NJustice, Matthew JJustice, Matthew JPoirier, ChristophePoirier, ChristopheSerban, Karina ASerban, Karina ARush, Natalia IRush, Natalia IKamocka, MalgorzataKamocka, MalgorzataPredescu, DanPredescu, DanPredescu, SandaPredescu, SandaPetrache, Irina and Petrache, Irina
American journal of physiology. Lung cellular and molecular physiology, vol. 309, (no. 4), pp. L425-L434, August 15, 2015. | Journal Article
2014
CD166 regulates human and murine hematopoietic stem cells and the hematopoietic niche.
Chitteti, Brahmananda RKobayashi, MichihiroCheng, YinghuaZhang, HuajiaPoteat, Bradley ABroxmeyer, Hal EPelus, Louis MHanenberg, HelmutZollman, AmyKamocka, MalgorzataCarlesso, NadiaCardoso, Angelo AKacena, Melissa A and Srour, Edward F
Blood, vol. 124, (no. 4), pp. 519-29, 2014/Jul/24. | Journal Article
 
Hepatocyte growth factor regulates neovascularization in developing fat pads.
White, HeatherActon, Anthony JKamocka, Malgorzata and Considine, Robert V
American journal of physiology. Endocrinology and metabolism, vol. 306, (no. 2), pp. E189-96, 2014/Jan/15. | Journal Article
2013
Combining RNAi and in vivo confocal microscopy analysis of the photoconvertible fluorescent protein Dendra2 to study a DNA repair protein.
Tell, GianlucaDi Piazza, MatteoKamocka, Malgorzata M and Vascotto, Carlo
BioTechniques, vol. 55, (no. 4), pp. 198-203, October 2013. | Journal Article
 
In Vitro Progression of Artificial White Spot Lesions Sealed With an Infiltrant Resin.
Gelani, RZandona, AfLippert, FKamocka, Mm and Eckert, G
Operative dentistry, December 19, 2013. | Journal Article
2012
Multiscale models of thrombogenesis.
Xu, ZhiliangKim, OlegKamocka, MalgorzataRosen, Elliot D and Alber, Mark
Wiley interdisciplinary reviews. Systems biology and medicine, vol. 4, (no. 3), pp. 237-246. | Journal Article
2011
A practical guide to evaluating colocalization in biological microscopy.
Dunn, Kenneth WKamocka, Malgorzata and Mc Donald, John H
American journal of physiology. Cell physiology, vol. 300, (no. 4), pp. C723-42, 2011/Apr. | Journal Article
 
Pro-inflammatory angiogenesis is mediated by p38 MAP kinase.
Rajashekhar, GangarajuKamocka, MalgorzataMarin, AbbySuckow, Mark AWolter, William RBadve, SunilSanjeevaiah, Aravind RPumiglia, KevinRosen, Elliot and Clauss, Matthias A
Journal of cellular physiology, vol. 226, (no. 3), pp. 800-8, 2011/Mar. | Journal Article
2010
A Multiscale Model of Venous Thrombus Formation with Surface-Mediated Control of Blood Coagulation Cascade
Xu, ZhiliangLioi, JoshuaMu, JianKamocka, MalgorzataLiu, XiaominChen, Danny ZRosen, Elliot D and Alber, Mark S
Biophysical Journal, vol. 98, (no. 9), pp. 1723-1732, 2010. | Journal Article
 
Segmentation, Reconstruction, and Analysis of Blood Thrombus Formation in 3D 2-Photon Microscopy Images
Mu, JianLiu, XiaominKamocka, Malgorzata MXu, ZhiliangAlber, Mark SRosen, Elliot D and Chen, Danny Z
EURASIP Journal on Advances in Signal Processing, vol. 2010, 2010. | Journal Article
 
Two-photon intravital imaging of thrombus development.
Kamocka, MalgorzataMu, JianLiu, XiaominChen, NanZollman, AmySturonas-Brown, BarbaraDunn, KennethXu, ZhiliangChen, Danny ZAlber, Mark S and Rosen, Elliot D
Journal of biomedical optics, vol. 15, (no. 1), pp. 016020, 2010 Jan-Feb. | Journal Article
2008
A multiscale model of thrombus development.
Xu, ZhiliangChen, NanKamocka, Malgorzata MRosen, Elliot D and Alber, Mark S
Journal of the Royal Society, Interface / the Royal Society, vol. 5, (no. 24), pp. 705-22, 2008/Jul/6. | Journal Article
 
Rat prostate tumors express cancer procoagulant, an activator of coagulation factor X.
Kamocka, MalgorzataPollard, MorrisSuckow, Mark AMielicki, Wojciech P and Rosen, Elliot D
Comparative medicine, vol. 58, (no. 3), pp. 282-6, 2008/Jun. | Journal Article
2005
Effect of cancer procoagulant (CP) on the growth and adhesion of MCF-7 cells to vitronectin in vitro
Kamocka, MalgorzataRózalski, MarekKrajewska, UrszulaWierzbicki, Ryszard and Mielicki, Wojciech
Cancer Letters, vol. 222, (no. 1), pp. 89-94, May 10, 2005. | Journal Article