62 Publications (Page 2 of 3)
2015
Populations of Metal-Glycan Structures Influence MS Fragmentation Patterns
Zhu, Feifei⋅Zhu, Feifei⋅Glover, Matthew S⋅Glover, Matthew S⋅Shi, Huilin⋅Shi, Huilin⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Clemmer, David E and Clemmer, David E
Journal of the American Society for Mass Spectrometry, vol. 26, (no. 1), pp. 25-35, Jan 2015. | Journal Article
 
Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice
Morris, Meaghan⋅Morris, Meaghan⋅Knudsen, Giselle M⋅Knudsen, Giselle M⋅Maeda, Sumihiro⋅Maeda, Sumihiro⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Ioanoviciu, Alexandra⋅Ioanoviciu, Alexandra⋅Burlingame, Alma L⋅Burlingame, Alma L⋅Mucke, Lennart and Mucke, Lennart
Nature neuroscience, vol. 18, (no. 8), pp. 1189, 2015-Aug. | Journal Article
2013
Activity-dependent Protein Dynamics Define Interconnected Cores of Co-regulated Postsynaptic Proteins
Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Thalhammer, Agnes⋅Thalhammer, Agnes⋅Burlingame, Alma L⋅Burlingame, Alma L⋅Schoepfer, Ralf and Schoepfer, Ralf
Molecular & cellular proteomics : MCP, vol. 12, (no. 1), pp. 41, 2013-Jan. | Journal Article
 
Differentiation of Opioid Drug Effects by Hierarchical Multi-Site Phosphorylation
Just, Sascha⋅Just, Sascha⋅Illing, Susann⋅Illing, Susann⋅Trester-Zedlitz, Michelle⋅Trester-Zedlitz, Michelle⋅Lau, Elaine K⋅Lau, Elaine K⋅Kotowski, Sarah J⋅Kotowski, Sarah J⋅Miess, Elke⋅Miess, Elke⋅Mann, Anika⋅Mann, Anika⋅Doll, Christian⋅Doll, Christian⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Burlingame, Alma L⋅Burlingame, Alma L⋅von Zastrow, Mark⋅Von Zastrow, Mark⋅Schulz, Stefan and Schulz, Stefan
Molecular pharmacology, vol. 83, (no. 3), pp. 639, 2013-Mar. | Journal Article
 
Inhibition of lysosomal enzyme activities by proton pump inhibitors
Liu, Wensheng⋅Liu, Wensheng⋅Baker, Susan⋅Baker, Susan S⋅Trinidad, Jonathan⋅Trinidad, Jonathan⋅Burlingame, Alma L⋅Burlingame, Alma⋅Baker, Robert D⋅Baker, Robert⋅Forte, John⋅Forte, John G⋅Virtuoso, Lauren P⋅Virtuoso, Lauren⋅Egilmez, Nejat⋅Egilmez, Nejat K⋅Zhu, Lixin and Zhu, Lixin
Journal of Gastroenterology, vol. 48, (no. 12), pp. 1352, 20131200. | Journal Article
 
N- and O-glycosylation in the murine synaptosome
Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Schoepfer, Ralf⋅Schoepfer, Ralf⋅Burlingame, Alma L⋅Burlingame, Alma L⋅Medzihradszky, Katalin F and Medzihradszky, Katalin F
Molecular & cellular proteomics : MCP, vol. 12, (no. 12), pp. 3488, 2013-Dec. | Journal Article
 
Nedd4 is a specific E3 ubiquitin ligase for the NMDA receptor subunit GluN2D
Gautam, Vivek⋅Gautam, Vivek⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Rimerman, Ronald A⋅Rimerman, Ronald A⋅Costa, Blaise M⋅Costa, Blaise M⋅Burlingame, Alma L⋅Burlingame, Alma L⋅Monaghan, Daniel T and Monaghan, Daniel T
Neuropharmacology, vol. 74, pp. 107, November 2013. | Journal Article
2012
Abstract 5607: TLE4 is a key modulator of resistance to mTOR pathway specific inhibition in glioblastoma
Laks, Dan R⋅Phillips, Tiffany⋅Paucar, Andres A⋅Orozco, Nicholas⋅Visnyei, Koppany⋅Mischel, Paul S⋅Coppola, Giovanni⋅Trinidad, Jonathan C⋅Burlingame, Alma L⋅Bradshaw, Ralph A and Kornblum, Harley I
Cancer Research, vol. 72, (no. 8 Supplement), pp. 5607, 2012-04-15. | Journal Article
 
Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse.
Trinidad, Jonathan C⋅Barkan, David T⋅Gulledge, Brittany F⋅Thalhammer, Agnes⋅Sali, Andrej⋅Schoepfer, Ralf and Burlingame, Alma L
Molecular & cellular proteomics : MCP, vol. 11, (no. 8), pp. 215-29, 2012/Aug. | Journal Article
 
Global kinetic analysis of proteolysis via quantitative targeted proteomics
Agard, Nicholas J⋅Mahrus, Sami⋅Trinidad, Jonathan C⋅Lynn, Aenoch⋅Burlingame, Alma L and Wells, James A
Proceedings of the National Academy of Sciences of the United States of America, vol. 109, (no. 6), Feb 7, 2012. | Journal Article
 
Quantitative profiling of caspase-cleaved substrates reveals different drug-induced and cell-type patterns in apoptosis.
Shimbo, Kazutaka⋅Hsu, Gerald W⋅Nguyen, Huy⋅Mahrus, Sami⋅Trinidad, Jonathan C⋅Burlingame, Alma L and Wells, James A
Proceedings of the National Academy of Sciences of the United States of America, vol. 109, (no. 31), pp. 12432-7, 2012/Jul/31. | Journal Article
 
Trk Activation of the ERK1/2 Kinase Pathway Stimulates Intermediate Chain Phosphorylation and Recruits Cytoplasmic Dynein to Signaling Endosomes for Retrograde Axonal Transport
Mitchell, David J⋅Mitchell, David J⋅Blasier, Kiev R⋅Blasier, Kiev R⋅Jeffery, Erin D⋅Jeffery, Erin D⋅Ross, Mitchell W⋅Ross, Mitchell W⋅Pullikuth, Ashok K⋅Pullikuth, Ashok⋅Suo, Dong⋅Suo, Dong⋅Park, Juyeon⋅Park, Juyeon⋅Smiley, W Russell⋅Smiley, W R⋅Lo, Kevin W⋅Lo, Kevin W-H⋅Shabanowitz, Jeffrey⋅Shabanowitz, Jeffrey⋅Deppmann, Christopher D⋅Deppmann, Christopher D⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Hunt, Donald F⋅Hunt, Donald F⋅Catling, Andrew D⋅Catling, Andrew D⋅Pfister, K Kevin and Pfister, K. K
The Journal of neuroscience : the official journal of the Society for Neuroscience, vol. 32, (no. 44), pp. 15510, 2012-Oct-31. | Journal Article
 
Unusual fragmentation of Pro-Ser/Thr-containing peptides detected in collision-induced dissociation spectra.
Medzihradszky, Katalin and Trinidad, Jonathan C
Journal of the American Society for Mass Spectrometry, vol. 23, (no. 4), pp. 602-7, 2012/Apr. | Journal Article
2011
Modification site localization scoring integrated into a search engine.
Baker, Peter R⋅Trinidad, Jonathan C and Chalkley, Robert J
Molecular & cellular proteomics : MCP, vol. 10, (no. 7), pp. M111.008078, July 2011. | Journal Article
 
Quantitative encoding of the effect of a partial agonist on individual opioid receptors by multisite phosphorylation and threshold detection.
Lau, Elaine K⋅Trester-Zedlitz, Michelle⋅Trinidad, Jonathan C⋅Kotowski, Sarah J⋅Krutchinsky, Andrew N⋅Burlingame, Alma L and Von Zastrow, Mark
Science signaling, vol. 4, (no. 185), pp. ra52, 2011/Aug/9. | Journal Article
2010
Widespread protein aggregation as an inherent part of aging in C. elegans.
David, Della C⋅Ollikainen, Noah⋅Trinidad, Jonathan C⋅Cary, Michael P⋅Burlingame, Alma L and Kenyon, Cynthia J
PLoS biology, vol. 8, (no. 8), pp. e1000450, 2010. | Journal Article
2009
A transmembrane accessory subunit that modulates kainate-type glutamate receptors.
Zhang, Wei⋅St-Gelais, Fannie⋅Grabner, Chad P⋅Trinidad, Jonathan C⋅Sumioka, Akio⋅Morimoto-Tomita, Megumi⋅Kim, Kwang S⋅Straub, Christoph⋅Burlingame, Alma L⋅Howe, James R and Tomita, Susumu
Neuron, vol. 61, (no. 3), pp. 385-96, 2009/Feb/12. | Journal Article
 
Correction: Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species
Beltrao, Pedro⋅Trinidad, Jonathan C⋅Trinidad, Jonathan C⋅Fiedler, Dorothea⋅Roguev, Assen⋅Lim, Wendell A⋅Lim, Wendell A⋅Shokat, Kevan M⋅Shokat, Kevan M⋅Burlingame, Alma L⋅Burlingame, Alma L⋅Krogan, Nevan J and Krogan, Nevan J
PLoS Biology, 2009-11-01. | Journal Article
 
Densin-180: revised membrane topology, domain structure and phosphorylation status
Thalhammer, Agnes⋅Trinidad, Jonathan C⋅Burlingame, Alma L and Schoepfer, Ralf
Journal of Neurochemistry, vol. 109, (no. 2), pp. 297-302, Apr 2009. | Journal Article
 
Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species.
Beltrao, Pedro⋅Trinidad, Jonathan C⋅Fiedler, Dorothea⋅Roguev, Assen⋅Lim, Wendell A⋅Shokat, Kevan M⋅Burlingame, Alma L and Krogan, Nevan
PLoS biology, vol. 7, (no. 6), pp. e1000134, 2009/Jun/16. | Journal Article
 
Normal protein composition of synapses in Ts65Dn mice: a mouse model of Down syndrome.
Fernandez, Fabian⋅Trinidad, Jonathan C⋅Blank, Martina⋅Feng, Dong-Dong⋅Burlingame, Alma L and Garner, Craig C
Journal of neurochemistry, vol. 110, (no. 1), pp. 157-69, 2009/Jul. | Journal Article
2008
Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini.
Mahrus, Sami⋅Trinidad, Jonathan C⋅Barkan, David T⋅Sali, Andrej⋅Burlingame, Alma L and Wells, James A
Cell, vol. 134, (no. 5), pp. 866-76, 2008/Sep/5. | Journal Article
 
Quantitative Analysis of Synaptic Phosphorylation and Protein Expression
Trinidad, Jonathan C⋅Trinidad, Jonathan⋅Thalhammer, Agnes⋅Thalhammer, Agnes⋅Specht, Christian⋅Specht, Christian G⋅Lynn, Aenoch⋅Lynn, Aenoch J⋅Baker, Peter R⋅Baker, Peter⋅Schoepfer, Ralf⋅Schoepfer, Ralf⋅Burlingame, Alma L and Burlingame, Alma
Molecular & Cellular Proteomics, vol. 7, (no. 4), pp. 696, 20080401. | Journal Article
2007
Impact of low and high tidal volumes on the rat alveolar epithelial type II cell proteome.
Hirsch, Jan⋅Hansen, Kirk C⋅Sapru, Anil⋅Frank, James A⋅Chalkley, Robert⋅Fang, Xiaohui⋅Trinidad, Jonathan C⋅Baker, Peter⋅Burlingame, Alma L and Matthay, Michael A
American journal of respiratory and critical care medicine, vol. 175, (no. 10), pp. 1006-13, 2007/May/15. | Journal Article
 
Renal Defects Associated with Improper Polarization of the CRB and DLG Polarity Complexes in MALS-3 Knockout Mice
Olsen, Olav⋅Olsen, Olav⋅Funke, Lars⋅Funke, Lars⋅Long, Jia-fu⋅Long, Jia-fu⋅Fukata, Masaki⋅Fukata, Masaki⋅Kazuta, Toshinari⋅Kazuta, Toshinari⋅Trinidad, Jonathan⋅Trinidad, Jonathan C⋅Moore, Kimberly⋅Moore, Kimberly A⋅Misawa, Hidemi⋅Misawa, Hidemi⋅Welling, Paul⋅Welling, Paul A⋅Burlingame, Alma L⋅Burlingame, Alma⋅Zhang, Ming Jie⋅Zhang, Mingjie⋅Bredt, David and Bredt, David S
The Journal of Cell Biology, vol. 179, (no. 1), pp. 164, 20071008. | Journal Article