1,092 Publications (Page 3 of 44)
2014
Multi-scale integration and predictability in resting state brain activity.
Kolchinsky, Artemy⋅Heuvel, M.P.⋅van den Heuvel, Martijn P⋅Van Den Heuvel, Martijn P.⋅Griffa, Alessandra⋅Hagmann, Patric⋅Rocha, Luis M⋅Sporns, Olaf⋅Goñi, Joaquin and Goñi, Joaquín
Frontiers in neuroinformatics, vol. 8, pp. 66, 2014. | Journal Article
 
Structure and dynamics affect the controllability of complex systems: a Preliminary Study. Artificial Life 14: Proceedings of the Fourteenth International Conference on the Synthesis and Simulation of Living Systems
Rocha, Luis. | Conference Proceeding
 
Structure and dynamics affect the controllability of complex systems: a Preliminary Study. Artificial Life 14: Proceedings of the Fourteenth International Conference on the Synthesis and Simulation of Living Systems
2013
An integrated pharmacokinetics ontology and corpus for text mining
Wu, Heng-Yi⋅Wu, Heng-Yi⋅Karnik, Shreyas⋅Karnik, Shreyas⋅Subhadarshini, Abhinita⋅Subhadarshini, Abhinita⋅Wang, Zhiping⋅Wang, Zhiping⋅Philips, Santosh⋅Philips, Santosh⋅Han, Xu⋅Han, Xu⋅Chiang, Chienwei⋅Chiang, Chienwei⋅Liu, Lei⋅Liu, Lei⋅Boustani, Malaz⋅Boustani, Malaz⋅Rocha, Luis M⋅Rocha, Luis M⋅Quinney, Sara K⋅Quinney, Sara K⋅Flockhart, David⋅Flockhart, David⋅Li, Lang and Li, Lang
BMC Bioinformatics, vol. 14, (no. 1), pp. 35, 2013. | Journal Article
 
Canalization and control in automata networks: body segmentation in Drosophila melanogaster.
Marques-Pita, Manuel and Rocha, Luis M
PloS one, vol. 8, (no. 3), pp. e55946, 2013. | Journal Article
 
Distance Closures on Complex Networks
Simas, Tiago and Rocha, Luis M
2013-12-09. | Journal Article
 
Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions
 
Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions.
Kolchinsky, Artemy⋅Lourenço, A⋅Li, L and Rocha, Luis M
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pp. 409-20, 2013. | Journal Article
2012
Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature
Lourenco, Analia⋅Louren?o, A.⋅Conover, Michael⋅Wong, Andrew⋅Nematzadeh, Azadeh⋅Pan, Fengxia⋅Shatkay, Hagit and Rocha, Luis M
BMC Bioinformatics, vol. 13, (no. 1), pp. 180, 2012. | Journal Article
 
Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions
Kolchinsky, Artemy⋅Lourenço, Anália⋅Li, Lang and Rocha, Luis M
2012-10-02. | Journal Article
 
Semi-metric networks for recommender systems
Simas, T. and Rocha, L.M.
Proceedings of the 2012 IEEE/WIC/ACM International Conference on Web Intelligence and Intelligent Agent Technology Workshops, WI-IAT 2012, pp. 175-179. | Journal Article
2011
A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.
Lourenço, Anália⋅Louren?o, A.⋅Conover, Michael⋅Wong, Andrew⋅Nematzadeh, Azadeh⋅Pan, Fengxia⋅Shatkay, Hagit and Rocha, Luis M
BMC bioinformatics, vol. 12 Suppl 8, pp. S12, 2011. | Journal Article
 
Collective classification of textual documents by guided self-organization in T-Cell cross-regulation dynamics
Abi-Haidar, A. and Rocha, L.M.
Evolutionary Intelligence, vol. 4, pp. 69-80. | Journal Article
 
Extraction of drug-drug interactions using all paths graph kernel
Karnik, S.⋅Subhadarshini, A.⋅Wang, Z.⋅Rocha, L.M. and Li, L.
CEUR Workshop Proceedings, vol. 761, pp. 83-88. | Conference Proceeding
 
Extraction of drug-drug interactions using all paths graph kernel
 
Prediction and Modularity in Dynamical Systems
Kolchinsky, Artemy and Rocha, Luis M
2011-06-19. | Journal Article
 
Schema redescription in cellular automata: Revisiting emergence in complex systems
Marques-Pita, M. and Rocha, L.M.
IEEE SSCI 2011 - Symposium Series on Computational Intelligence - IEEE ALIFE 2011: 2011 IEEE Symposium on Artificial Life, pp. 233-240. | Journal Article
 
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger, Martin⋅Krallinger, Martin⋅Vazquez, Miguel⋅Vazquez, Miguel⋅Leitner, Florian⋅Leitner, Florian⋅Salgado, David⋅Salgado, David⋅Chatr-Aryamontri, Andrew⋅Chatr-Aryamontri, Andrew⋅Chatr-aryamontri, A.⋅Winter, Andrew⋅Winter, Andrew⋅Perfetto, Livia⋅Perfetto, Livia⋅Briganti, Leonardo⋅Briganti, Leonardo⋅Licata, Luana⋅Licata, Luana⋅Iannuccelli, Marta⋅Iannuccelli, Marta⋅Castagnoli, Luisa⋅Castagnoli, Luisa⋅Cesareni, Gianni⋅Cesareni, Gianni⋅Tyers, Mike⋅Tyers, Mike⋅Schneider, Gerold⋅Schneider, Gerold⋅Rinaldi, Fabio⋅Rinaldi, Fabio⋅Leaman, Robert⋅Leaman, Robert⋅Gonzalez, Graciela⋅Gonzalez, Graciela⋅Matos, Sergio⋅Matos, Sergio⋅Kim, Sun⋅Kim, Sun⋅Wilbur, W J⋅Wilbur, W John⋅Rocha, Luis⋅Rocha, Luis M⋅Shatkay, Hagit⋅Shatkay, Hagit⋅Tendulkar, Ashish V⋅Tendulkar, Ashish V⋅Agarwal, Shashank⋅Agarwal, Shashank⋅Liu, Feifan⋅Liu, Feifan⋅Wang, Xinglong⋅Wang, Xinglong⋅Rak, Rafal⋅Rak, Rafal⋅Noto, Keith⋅Noto, Keith⋅Elkan, Charles P⋅Elkan, Charles⋅Lu, Zhiyong⋅Lu, Zhiyong⋅Dogan, Rezarta Islamaj⋅Dogan, Rezarta I⋅Fontaine, Jean-Fred⋅Fontaine, Jean-Fred⋅Andrade-Navarro, Miguel A⋅Andrade-Navarro, Miguel A⋅Valencia, Alfonso and Valencia, Alfonso
BMC bioinformatics, vol. 12 Suppl 8, pp. S3, 2011. | Journal Article
2010
BioDR: Semantic indexing networks for biomedical document retrieval
Lourenco, Analia⋅Louren?o, A.⋅Carreira, Rafael⋅Glez-Peña, D.⋅Glez-Pena, Daniel⋅Mendez, Jose R⋅Méndez, J.R.⋅Carneiro, Sonia⋅Rocha, Luis M⋅Díaz, F.⋅Diaz, Fernando⋅Ferreira, Eugenio C⋅Rocha, Isabel⋅Fdez-Riverola, Florentino and Rocha, Miguel
Expert Systems with Applications, vol. 37, (no. 4), pp. 3444-3453, 2010. | Journal Article
 
Biomedical article classification using an agent-based model of T-cell cross-regulation
Abi-Haidar, A. and Rocha, L.M.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 6209 LNCS, pp. 237-249. | Journal Article
 
Classification of Protein-Protein Interaction Full-Text Documents Using Text and Citation Network Features
Kolchinsky, Artemy⋅Abi-Haidar, Alaa⋅Kaur, Jasleen⋅Hamed, Ahmed A and Rocha, Luis M
IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 7, (no. 3), pp. 400-411, 2010. | Journal Article
 
Collective classification of biomedical articles using T-cell cross-regulation
Abi-Haidar, A. and Rocha, L.M.
Artificial Life XII: Proceedings of the 12th International Conference on the Synthesis and Simulation of Living Systems, ALIFE 2010, pp. 706-713. | Conference Proceeding
 
Collective classification of biomedical articles using T-cell cross-regulation
 
Collective classification of biomedical articles using T-cell cross-regulation
Abi-Haidar, A. and Rocha, L.M.
Artificial Life XII: Proceedings of the 12th International Conference on the Synthesis and Simulation of Living Systems, ALIFE 2010, pp. 706-713. | Journal Article
2009
Biomedical text mining applied to document retrieval and semantic indexing
Lourenço, A.⋅Louren?o, A.⋅Carneiro, S.⋅Ferreira, E.C.⋅Carreira, R.⋅Rocha, L.M.⋅Glez-Peña, D.⋅Méndez, J.R.⋅Fdez-Riverola, F.⋅Diaz, F.⋅Rocha, I. and Rocha, M.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 5518 LNCS, pp. 954-963. | Journal Article