75 Publications (Page 3 of 3)
2011
Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomicsShah, N.⋅Tang, H.⋅Doak, T.G. and Ye, Y.Pacific Symposium on Biocomputing 2011, PSB 2011, pp. 165-176.
| Conference Proceeding
Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics.Shah, Neethu⋅Tang, Haixu⋅Doak, Thomas and Ye, YuzhenPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pp. 165-76, 2011.
| Journal Article
The Oxytricha trifallax mitochondrial genomeSwart, Estienne C⋅Nowacki, Mariusz⋅Shum, Justine⋅Stiles, Heather⋅Higgins, Brian P⋅Doak, Thomas G⋅Schotanus, Klaas⋅Magrini, Vincent J⋅Minx, Patrick⋅Mardis, Elaine R and othersGenome biology and evolution, vol. 4, pp. 136–154.
| Journal Article
2009
A Functional Role for Transposases in a Large Eukaryotic GenomeNowacki, Mariusz⋅Higgins, Brian P⋅Maquilan, Genevieve M⋅Swart, Estienne C⋅Doak, Thomas and Landweber, Laura FScience (Washington), vol. 324, (no. 5959), pp. 935-938, 2009.
| Journal Article
A Functional Role for Transposases in a Large Eukaryotic GenomeNowacki, Mariusz⋅Higgins, Brian P⋅Maquilan, Genevieve M⋅Swart, Estienne C⋅Doak, Thomas and Landweber, Laura FScience (Washington), vol. 324, (no. 5929), pp. 935-938, 2009.
| Journal Article
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and MetagenomesYe, Yuzhen⋅Doak, Thomas and Ouzounis, Christos APLoS Computational Biology, vol. 5, (no. 8), pp. e1000465, 2009.
| Journal Article
RNA-mediated epigenetic programming of a genome-rearrangement pathwayNowacki, Mariusz⋅Nowacki, Mariusz⋅Vijayan, Vikram⋅Vijayan, Vikram⋅Zhou, Yi⋅Zhou, Yi⋅Schotanus, Klaas⋅Schotanus, Klaas⋅Doak, Thomas⋅Doak, Thomas G.⋅Landweber, Laura F. and Landweber, Laura FNature, vol. 451, (no. 7175), pp. 153-158, 2008.
| Journal Article
The Pathway to Detangle a Scrambled GeneMoellenbeck, Matthias⋅Möllenbeck, Matthias⋅Zhou, Yi⋅Zhou, Yi⋅Cavalcanti, André R⋅Cavalcanti, Andre R⋅Joensson, Franziska⋅Jönsson, Franziska⋅Higgins, Brian P⋅Higgins, Brian P⋅Wei-Jen, Chang⋅Chang, Wei Jen⋅Juranek, Stefan⋅Juranek, Stefan⋅Doak, Thomas G⋅Doak, Thomas⋅Rozenberg, Grzegorz⋅Rozenberg, Grzegorz⋅Lipps, Hans J⋅Lipps, Hans J⋅Landweber, Laura F⋅Landweber, Laura F and Ahmed, NiyazPloS ONE, vol. 3, (no. 6), pp. e2330, 2008.
| Journal Article
Sequence features of Oxytricha trifallax (class Spirotrichea) macronuclear telomeric and subtelomeric sequences.Cavalcanti, André R⋅Dunn, Diane M⋅Weiss, Robert B⋅Herrick, Glenn A⋅Landweber, Laura F and Doak, ThomasProtist, vol. 155, (no. 3), pp. 311-22, 2004/Sep.
| Journal Article
2003
Selection on the genes of Euplotes crassus Tec1 and Tec2 transposons: evolutionary appearance of a programmed frameshift in a Tec2 gene encoding a tyrosine family site-specific recombinase.Doak, Thomas⋅Witherspoon, David J⋅Jahn, Carolyn L and Herrick, Glenn AEukaryotic cell, vol. 2, (no. 1), pp. 95-102, 2003/Feb.
| Journal Article
Sequencing the Oxytricha trifallax macronuclear genome: a pilot projectDoak, Thomas⋅Cavalcanti, André R⋅Stover, Nicholas A⋅Dunn, DM⋅Weiss, Robert⋅Herrick, Glenn A and Landweber, Laura FTrends in Genetics, vol. 19, (no. 11), pp. 603-607, 2003.
| Journal Article
2002
Telomere formation on macronuclear chromosomes of Oxytricha trifallax and O. fallax: alternatively processed regions have multiple telomere addition sitesWilliams, Kevin R⋅Doak, Thomas and Herrick, GlennBMC Genetics, vol. 3, 2002.
| Journal Article
Telomere formation on macronuclear chromosomes of Oxytricha trifallax and O. fallax: alternatively processed regions have multiple telomere addition sites.Williams, Kevin R⋅Doak, Thomas and Herrick, GlennBMC genetics, vol. 3, pp. 16, 2002/Aug/28.
| Journal Article
1997
Conserved features of TBE1 transposons in ciliated protozoaDoak, Thomas⋅Witherspoon, David J⋅Doerder, FPaul⋅Williams, Kevin and Herrick, Glenn AGenetica, vol. 101, (no. 2), pp. 75-86, 1997.
| Journal Article
Selection on the protein-coding genes of the TBE1 family of transposable elements in the ciliates Oxytricha fallax and O. trifallax.Witherspoon, D J⋅Doak, Thomas⋅Williams, K R⋅Seegmiller, Adam⋅Seger, Jon and Herrick, Glenn AMolecular biology and evolution, vol. 14, (no. 7), pp. 696-706, 1997/Jul.
| Journal Article
1996
Internal eliminated sequences interrupting the Oxytricha 81 locus: Allelic divergence, conservation, conversions, and possible transposon originsSeegmiller, Adam⋅Williams, KR⋅Hammersmith, Robert L⋅Doak, Thomas⋅Witherspoon, D.⋅Messick, T.⋅Storjohann, LL and Herrick, Glenn AMolecular Biology and Evolution, vol. 13, (no. 10), pp. 1351-1362, 1996.
| Journal Article
1994
A family of transposases genes in transposons found in prokaryotes, multicellular eukaryotes and ciliated protozoansDoak, Tg⋅Doerder, FP⋅Jahn, C and Herrick, GProc Natl Acad. Sci USA, vol. 91, pp. 942–946.
| Journal Article
A proposed superfamily of transposase genes: transposon-like elements in ciliated protozoa and a common "D35E" motif.Doak, Thomas⋅Doerder, F P⋅Jahn, Carolyn L and Herrick, Glenn AProceedings of the National Academy of Sciences of the United States of America, vol. 91, (no. 3), pp. 942-6, 1994/Feb/1.
| Journal Article
1993
Developmental precise excision of Oxytricha trifallax telomere-bearing elements and formation of circles closed by a copy of the flanking target duplicationWilliams, K.⋅Doak, Thomas and Herrick, Glenn AEMBO Journal, vol. 12, (no. 12), pp. 4593-4601, 1993.
| Journal Article
1985
Aberrant regulation of methylesterase activity in cheD chemotaxis mutants of Escherichia coliKehry, M.R.⋅Doak, T.G. and Dahlquist, F.W.Journal of Bacteriology, vol. 161, pp. 105-112.
| Journal Article
Sensory adaptation in bacterial chemotaxis: regulation of demethylation.Kehry, M R⋅Doak, Thomas and Dahlquist, F WJournal of bacteriology, vol. 163, (no. 3), pp. 983-90, 1985/Sep.
| Journal Article
1984
Stimulus-induced changes in methylesterase activity during chemotaxis in Escherichia coli.Kehry, M R⋅Doak, Thomas and Dahlquist, F WThe Journal of biological chemistry, vol. 259, (no. 19), pp. 11828-35, 1984/Oct/10.
| Journal Article
