37 Publications (Page 2 of 2)
2013
Analysis of BRCA1 variants in double-strand break repair by homologous recombination and single-strand annealing.
Towler, William I⋅Towler, William I⋅Zhang, Jie⋅Zhang, Jie⋅Ransburgh, Derek J R⋅Ransburgh, Derek J⋅Toland, Amanda E⋅Toland, Amanda E⋅Ishioka, Chikashi⋅Ishioka, Chikashi⋅Chiba, Natsuko⋅Chiba, Natsuko⋅Parvin, Jeffrey D and Parvin, Jeff
Human mutation, vol. 34, (no. 3), pp. 439-445, March 2013. | Journal Article
 
Fhit Deficiency-Induced Global Genome Instability Promotes Mutation and Clonal Expansion
Miuma, Satoshi⋅Miuma, Satoshi⋅Saldivar, Joshua⋅Saldivar, Joshua C⋅Karras, Jenna R⋅Karras, Jenna R⋅Waters, Catherine E⋅Waters, Catherine E⋅Paisie, Carolyn A⋅Paisie, Carolyn A⋅Wang, Yao⋅Wang, Yao⋅Jin, Victor⋅Jin, Victor⋅Sun, Jin⋅Sun, Jin⋅Druck, Teresa⋅Druck, Teresa⋅Zhang, Jie⋅Zhang, Jie⋅Huebner, Kay and Huebner, Kay
PLoS One, vol. 8, (no. 11), Nov 2013. | Journal Article
 
Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data
Bailey, Timothy⋅Bailey, Timothy⋅Bailey, Timothy⋅Krajewski, Pawel⋅Krajewski, Pawel⋅Krajewski, Pawel⋅Ladunga, Istvan⋅Ladunga, Istvan⋅Ladunga, Steve⋅Lefebvre, Celine⋅Lefebvre, Celine⋅Lefebvre, Celine⋅Li, Qunhua⋅Li, Qunhua⋅Li, Qunhua⋅Liu, Tao⋅Liu, Tao⋅Liu, Tao⋅Madrigal, Pedro⋅Madrigal, Pedro⋅Madrigal, Pedro⋅Taslim, Cenny⋅Taslim, Cenny⋅Taslim, Cenny⋅Zhang, Jie⋅Zhang, Jie and Zhang, Jie
PLoS computational biology, vol. 9, (no. 11), pp. e1003326, 2013-00-00. | Journal Article
2012
Chromatin modification by SUMO-1 stimulates the promoters of translation machinery genes.
Liu, Hui-wen⋅Liu, Hui-wen⋅Zhang, Jie⋅Zhang, Jie⋅Heine, George⋅Heine, George F⋅Arora, Mansi⋅Arora, Mansi⋅Gulcin Ozer, Hatice⋅Gulcin Ozer, Hatice⋅Onti-Srinivasan, Raghuram⋅Onti-Srinivasan, Raghuram⋅Huang, Kun⋅Huang, Kun⋅Parvin, Jeffrey D and Parvin, Jeffrey D
Nucleic acids research, vol. 40, (no. 20), pp. 10172-10186, November 1, 2012. | Journal Article
 
Identifying common genes and networks in multi-organ fibrosis.
Wenzke, Kevin E⋅Wenzke, Kevin E⋅Cantemir-Stone, Carmen⋅Cantemir-Stone, Carmen⋅Zhang, Jie⋅Zhang, Jie⋅Marsh, Clay B⋅Marsh, Clay B⋅Huang, Kun and Huang, Kun
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, vol. 2012, pp. 106-115, 2012. | Journal Article
 
Promoters active in interphase are bookmarked during mitosis by ubiquitination.
Arora, Mansi⋅Arora, Mansi⋅Zhang, Jie⋅Zhang, Jie⋅Heine, George F⋅Heine, George⋅Ozer, Gulcin⋅Ozer, Gulcin⋅Liu, Hui-wen⋅Liu, Hui-wen⋅Huang, Kun⋅Huang, Kun⋅Parvin, Jeffrey D and Parvin, Jeffrey D
Nucleic acids research, vol. 40, (no. 20), pp. 10187-10202, November 1, 2012. | Journal Article
 
Redistribution of H3K4me2 on neural tissue specific genes during mouse brain development
Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Parvin, Jeffrey D⋅Parvin, Jeffrey⋅Parvin, Jeffrey⋅Huang, Kun⋅Huang, Kun and Huang, Kun
BMC genomics, vol. 13 Suppl 8, (no. S8), pp. S5, 2012-00-00. | Journal Article
 
Weighted frequent gene co-expression network mining to identify genes involved in genome stability.
Zhang, Jie⋅Zhang, Jie⋅Lu, Kewei⋅Lu, Kewei⋅Xiang, Yang⋅Xiang, Yang⋅Islam, Muhtadi⋅Islam, Muhtadi⋅Kotian, Shweta⋅Kotian, Shweta⋅Kais, Zeina⋅Kais, Zeina⋅Lee, Cindy⋅Lee, Cindy⋅Arora, Mansi⋅Arora, Mansi⋅Liu, Hui-Wen⋅Liu, Hui-Wen⋅Parvin, Jeff⋅Parvin, Jeffrey D⋅Huang, Kun and Huang, Kun
PLoS computational biology, vol. 8, (no. 8), pp. e1002656, 2012. | Journal Article
2011
Inflammatory Gene Regulatory Networks in Amnion Cells Following Cytokine Stimulation: Translational Systems Approach to Modeling Human Parturition
Li, Ruth⋅Li, Ruth⋅Li, Ruth⋅Li, Ruth⋅Ackerman, William E⋅Ackerman, William E⋅Ackerman, William E⋅Ackerman, William E⋅Summerfield, Taryn L⋅Summerfield, Taryn L⋅Summerfield, Taryn L⋅Summerfield, Taryn L⋅Yu, Lianbo⋅Yu, Lianbo⋅Yu, Lianbo⋅Yu, Lianbo⋅Gulati, Parul⋅Gulati, Parul⋅Gulati, Parul⋅Gulati, Parul⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Zhang, Jie⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Huang, Kun⋅Romero, Roberto⋅Romero, Roberto⋅Romero, Roberto⋅Romero, Roberto⋅Kniss, Douglas A⋅Kniss, Douglas A⋅Kniss, Douglas A and Kniss, Douglas A
PLoS One, vol. 6, (no. 6), Jun 2011. | Journal Article
2010
Multi-dimensional discovery of biomarker and phenotype complexes.
Payne, Philip R⋅Payne, Philip R O⋅Huang, Kun⋅Huang, Kun⋅Keen-Circle, Kristin⋅Keen-Circle, Kristin⋅Kundu, Abhisek⋅Kundu, Abhisek⋅Zhang, Jie⋅Zhang, Jie⋅Borlawsky, Tara B and Borlawsky, Tara B
BMC bioinformatics, vol. 11 Suppl 9, pp. S3, October 28, 2010. | Journal Article
2009
Using Frequent Co-expression Network to Identify Gene Clusters for Breast Cancer Prognosis.
Zhang, Jie⋅Zhang, Jie⋅Huang, Kun⋅Huang, Kun⋅Xiang, Yang⋅Xiang, Yang⋅Jin, Ruoming and Jin, Ruoming
Proceedings ... International Joint Conference on Bioinformatics, Systems Biology and Intellgent Computing. International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, pp. 428-434, August 3, 2009. | Journal Article
2004
Arginine 391 in subunit I of the cytochrome bd quinol oxidase from Escherichia coli stabilizes the reduced form of the hemes and is essential for quinol oxidase activity.
Zhang, Jie⋅Zhang, Jie⋅Hellwig, Petra⋅Hellwig, Petra⋅Osborne, Jeffrey P⋅Osborne, Jeffrey P⋅Gennis, Robert B and Gennis, Robert B
The Journal of biological chemistry, vol. 279, (no. 52), pp. 53980-53987, December 24, 2004. | Journal Article