61 Publications (Page 2 of 3)
2021
Thioesterase enzyme families: functions, structures, and mechanisms.
Caswell, Benjamin Tde Carvalho, Caio CNguyen, HungRoy, MonikrishnaNguyen, Tin and Cantu, David C
Protein science : a publication of the Protein Society, December 18, 2021. | Journal Article
2020
A comprehensive survey of regulatory network inference methods using single-cell RNA sequencing data.
Nguyen, HungTran, DucTran, BangPehlivan, Bahadir and Nguyen, Tin
Briefings in bioinformatics, September 16, 2020. | Journal Article
 
Analysis of Short-read Aligners using Genome Sequence Complexity
Tran, QuangVo, Nam SyHicks, EricNguyen, Tin and Phan, Vinhthuy
IEEE
 
A Novel Method for Cancer Subtyping and Risk Prediction Using Consensus Factor Analysis.
Tran, DucTran, DucNguyen, HungNguyen, HungLe, UyenLe, UyenBebis, GeorgeBebis, GeorgeLuu, Hung NLuu, Hung NNguyen, Tin and Nguyen, Tin
Frontiers in oncology, vol. 10, pp. 1052, 2020. | Journal Article
 
Disease subtyping using community detection from consensus networks
Nguyen, HungTran, Bang and Le, Duc-Hau
IEEE
 
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data.
J, TanevskiTanevski, JovanT, NguyenNguyen, ThinB, TruongTruong, BuuKaraiskos, NikosN, KaraiskosME, AhsenAhsen, Mehmet ErenZhang, XinyuX, ZhangShu, ChangC, ShuXu, KeK, XuX, LiangLiang, XiaoyuY, HuHu, YingPham, Hoang VvHV, PhamXiaomei, LiL, XiaomeiLe, Thuc DTD, LeAL, TarcaTarca, Adi LBhatti, GauravG, BhattiR, RomeroRomero, RobertoP, MeyerKarathanasis, NestorasLoher, PhillipeChen, YangOuyang, ZhengqingMao, DishengZhang, YupingZand, MaryamRuan, JianhuaHafemeister, ChristophQiu, PengTran, DucNguyen, TinGabor, AttilaYu, ThomasGuinney, JustinGlaab, EnricoKrause, RolandBanda, PeterStolovitzky, GustavoRajewsky, NikolausSaez-Rodriguez, Julioand, Pablo MeyerSaez-Rodriguez, Julio and Meyer, Pablo
Life science alliance, vol. 3, (no. 11), November 2020. | Journal Article
 
GSMA: an approach to identify robust global and test Gene Signatures using Meta-Analysis.
Shafi, AdibShafi, AdibNguyen, TinNguyen, TinPeyvandipour, AzamPeyvandipour, AzamDraghici, Sorin and Draghici, Sorin
Bioinformatics (Oxford, England), vol. 36, (no. 2), pp. 487-495, January 15, 2020. | Journal Article
 
Integrated Cancer Subtyping using Heterogeneous Genome-Scale Molecular Datasets.
Arslanturk, SuzanDraghici, Sorin and Nguyen, Tin
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, vol. 25, pp. 551-562, 2020. | Journal Article
 
Multi-Omics Analysis Detects Novel Prognostic Subgroups of Breast Cancer
Nguyen, Quang-Huy and Le, Duc-Hau
Frontiers in Genetics, vol. 11. | Journal Article
 
NBIA: a network-based integrative analysis framework - applied to pathway analysis.
Nguyen, TinNguyen, TinShafi, AdibShafi, AdibNguyen, Tuan-MinhNguyen, Tuan-MinhSchissler, A GrantSchissler, A GrantDraghici, Sorin and Draghici, Sorin
Scientific reports, vol. 10, (no. 1), pp. 4188, March 6, 2020. | Journal Article
2019
A Comprehensive Survey of Tools and Software for Active Subnetwork Identification.
Nguyen, HungNguyen, HungShrestha, SangamShrestha, SangamTran, DucTran, DucShafi, AdibShafi, AdibDraghici, SorinDraghici, SorinNguyen, Tin and Nguyen, Tin
Frontiers in genetics, vol. 10, pp. 155, 2019. | Journal Article
 
A Multi-Cohort and Multi-Omics Meta-Analysis Framework to Identify Network-Based Gene Signatures. Frontiers in Genetics
. | Journal Article
 
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
MP, MendenMenden, M.P.AstraZeneca-Sanger Drug Combination DREAM ConsortiumMenden, Michael PMenden, MpMenden, Michael PMenden, M.P.Menden, Michael PMP, MendenMenden, Michael P.D, WangWang, DennisWang, D.Wang, DennisWang, D.Wang, DennisD, WangWang, DMason, Mike JMason, Mike JMason, MJWang, DennisMason, Mike JMJ, MasonMason, M.J.Mason, M.J.MJ, MasonB, SzalaiSzalai, BenceSzalai, BenceSzalai, B.Mason, Mike J.B, SzalaiSzalai, BSzalai, B.Szalai, BenceBulusu, KCKC, BulusuKC, BulusuSzalai, BenceBulusu, K.C.Bulusu, Krishna CBulusu, Krishna CBulusu, Krishna CBulusu, K.C.Guan, YBulusu, Krishna C.Guan, Y.Guan, YuanfangGuan, Y.Guan, YuanfangY, GuanGuan, YuanfangY, GuanYu, ThomasYu, ThomasGuan, YuanfangT, YuYu, T.T, YuYu, T.Yu, ThomasYu, TJ, KangKang, JaewooKang, J.Kang, JaewooKang, J.Yu, ThomasKang, JJ, KangKang, JaewooM, JeonJeon, M.Jeon, M.Jeon, MinjiJeon, MKang, JaewooM, JeonJeon, MinjiJeon, MinjiWolfinger, R.Jeon, MinjiWolfinger, RussR, WolfingerWolfinger, RussWolfinger, RWolfinger, R.R, WolfingerWolfinger, RussNguyen, TinNguyen, TinWolfinger, RussNguyen, T.T, NguyenNguyen, TinNguyen, TNguyen, T.T, NguyenZaslavskiy, MikhailZaslavskiy, MikhailNguyen, TinM, ZaslavskiyZaslavskiy, M.Zaslavskiy, MZaslavskiy, MikhailZaslavskiy, M.M, ZaslavskiyAbante, JordiJ, Saez-RodriguezZaslavskiy, MikhailJang, ISAbante, J.J, Saez-RodriguezAbante, J.Abante, JordiGhazoui, ZJang, In SockSchmitz Abecassis, BarbaraAbecassis, B.S.Abecassis, B.S.Abante, JordiSchmitz Abecassis, BarbaraAben, NanneAbecassis, Barbara SchmitzGhazoui, ZaraAben, N.Aben, N.Aben, NanneAhsen, MEAghamirzaie, D.Vogel, RAghamirzaie, D.Ahsen, Mehmet ErenAben, NanneAittokallio, TeroAittokallio, TeroAittokallio, T.Vogel, RobertNeto, ECAittokallio, T.Aghamirzaie, DelasaNorman, TAkhtari, F.S.Akhtari, Farida SNeto, Elias ChaibubAkhtari, F.S.Akhtari, Farida SAittokallio, TeroTang, EKYNorman, TheaAkhtari, Farida S.Al-lazikani, BissanAl-lazikani, B.Al-lazikani, BissanAl-lazikani, B.Garnett, MJTang, Eric K YAl-lazikani, BissanAlam, TanvirAlam, T.Alam, TanvirAlam, T.Garnett, Mathew JAllam, A.Allam, AminAllam, AminDi Veroli, GYAlam, TanvirAllam, A.Allen, ChadAllen, ChadVeroli, Giovanni Y DiAllen, C.Allen, C.Fawell, SAllam, AminStolovitzky, GAlmeida, M.P.Allen, ChadAlmeida, M.P.Fawell, Stephende Almeida, Mariana PelicanoAltarawy, D.Altarawy, DoaaAltarawy, D.Altarawy, DoaaStolovitzky, GustavoGuinney, JAltarawy, DoaaGuinney, JustinDry, JRAlves, ViniciusAlves, ViniciusAlves, V.Alves, V.Dry, Jonathan RSaez-Rodriguez, JAmadoz, A.Amadoz, AliciaAmadoz, AliciaAlves, ViniciusAmadoz, A.Anchang, B.Abante, JAmadoz, AliciaAnchang, B.Saez-Rodriguez, JulioAntolin, A.A.Antolin, Albert AAntolin, Albert AAbecassis, BSAntolin, A.A.Anchang, BenedictAsh, J.R.Ash, J.R.Antolin, Albert A.Aben, NAsh, Jeremy RAsh, Jeremy RAznar, V.R.Aznar, V.R.Ash, Jeremy R.Aghamirzaie, DAznar, Victoria RomeoBa-alawi, WailBa-alawi, W.Aittokallio, TBa-alawi, WailBa-alawi, W.Bagheri, MoeenBagheri, MoeenBagheri, M.Akhtari, FSBa-alawi, WailBagheri, M.Bagheri, MoeenAl-lazikani, BBajic, VladimirBajic, VladimirBajic, V.Bajic, V.Ball, G.Bajic, VladimirBall, G.Alam, TBall, GordonBall, GordonBall, GordonBallester, Pedro JBallester, P.J.Allam, ABallester, P.J.Ballester, Pedro JBaptista, DeloraBaptista, DeloraBallester, Pedro J.Allen, CBaptista, D.Baptista, D.Bare, C.Almeida, MPBare, ChristopherBare, ChristopherBare, C.Baptista, DeloraBateson, MathildeBateson, M.Altarawy, DBateson, MathildeBateson, M.Bare, ChristopherAlves, VBateson, MathildeBender, AndreasBender, AndreasBender, A.Bender, A.Bertrand, DenisBertrand, DenisBender, AndreasAmadoz, ABertrand, D.Bertrand, D.Wijayawardena, B.Anchang, BBertrand, DenisWijayawardena, B.Boroevich, K.A.Wijayawardena, BhagyaBoroevich, Keith ABoroevich, K.A.Boroevich, Keith AAntolin, AABosdriesz, EvertBoroevich, Keith A.Ash, JRBosdriesz, E.Bosdriesz, EvertBosdriesz, E.Bougouffa, S.Bougouffa, SalimBougouffa, S.Bosdriesz, EvertBougouffa, SalimRomeo Aznar, VBa-alawi, WBounova, GerganaBougouffa, SalimBounova, G.Bounova, GerganaBounova, G.Brouwer, T.Brouwer, T.Brouwer, ThomasBrouwer, ThomasBagheri, MBounova, GerganaBajic, VBryant, BarbaraBryant, B.Brouwer, ThomasBryant, B.Bryant, BarbaraCalaza, ManuelBryant, BarbaraBall, GCalaza, M.Calaza, M.Calaza, ManuelCalderone, A.Ballester, PJCalderone, AlbertoCalaza, ManuelCalderone, A.Calderone, AlbertoBaptista, DCalza, StefanoCalza, S.Calza, S.Calderone, AlbertoCalza, StefanoHuang, R. StephanieBare, CCapuzzi, S.Capuzzi, StephenCapuzzi, StephenCapuzzi, S.Carbonell-Caballero, JoseBateson, MCarbonell-Caballero, J.Carbonell-Caballero, JoseCarbonell-Caballero, J.Bender, ACarlin, D.Carlin, D.Carlin, DanielCarlin, DanielCarter, HannahBertrand, DCarter, H.Carter, H.Carter, HannahCastagnoli, L.Castagnoli, L.Castagnoli, LuisaWijayawardena, BCastagnoli, LuisaCelebi, RemziCelebi, RemziCelebi, R.Celebi, R.Boroevich, KACesareni, GianniCesareni, GianniCesareni, G.Cesareni, G.Bosdriesz, EChang, H.Chang, H.Chang, HyeokyoonChang, HyeokyoonBougouffa, SChen, GuocaiBounova, GChen, G.Chen, G.Chen, GuocaiBrouwer, TChen, HaoranChen, H.Chen, H.Chen, HaoranChen, HuiyuanChen, H.Chen, H.Chen, HuiyuanBryant, BCalaza, MCheng, LijunCheng, L.Cheng, LijunCheng, L.Chernomoretz, A.Calderone, AChernomoretz, ArielChernomoretz, ArielChernomoretz, A.Calza, SChicco, DavideChicco, DavideChicco, D.Chicco, D.Capuzzi, SCho, K.-H.Cho, Kwang-HyunCho, Kwang-HyunCho, K.-H.Cho, SunghwanCarbonell-Caballero, JCho, S.Cho, S.Cho, SunghwanChoi, DaeseonChoi, D.Choi, DaeseonCarlin, DChoi, D.Choi, J.Choi, J.Carter, HChoi, JaejoonChoi, JaejoonCastagnoli, LChoi, KwanghunChoi, K.Choi, KwanghunChoi, K.Celebi, RChoi, M.Choi, MinsooChoi, MinsooChoi, M.De Cock, MartineDe Cock, MartineCock, M.D.Cock, M.D.Cesareni, GCoker, E.Coker, ElizabethChang, HCoker, E.Coker, ElizabethCortes-Ciriano, I.Cortes-Ciriano, IsidroCortes-Ciriano, I.Cortes-Ciriano, IsidroChen, GChen, HCserzö, M.Cserzö, MiklósCserzö, M.Cserzö, MiklósCubuk, CankutCubuk, CankutChen, HCubuk, C.Cubuk, C.Curtis, C.Curtis, C.Cheng, LCurtis, ChristinaCurtis, ChristinaDaele, D.V.Chernomoretz, ADaele, D.V.Chicco, DDang, Cuong CDang, C.C.Dang, Cuong CDang, C.C.Cho, K-HDijkstra, TjeerdDijkstra, TjeerdDijkstra, T.Dijkstra, T.Cho, SDopazo, JoaquinDopazo, J.Dopazo, J.Dopazo, JoaquinDraghici, SorinChoi, DDraghici, S.Draghici, SorinDraghici, S.Drosou, AnastasiosChoi, JDrosou, A.Drosou, AnastasiosDrosou, A.Dumontier, MichelDumontier, M.Dumontier, M.Choi, KDumontier, MichelEhrhart, FriederikeEhrhart, FriederikeEhrhart, F.Choi, MEhrhart, F.Eid, Fatma-ElzahraaEid, F.-E.Eid, Fatma-ElzahraaEid, F.-E.De Cock, MElHefnawi, M.ElHefnawi, MahmoudElHefnawi, MahmoudCoker, EElHefnawi, M.Elmarakeby, HaithamElmarakeby, HaithamCortes-Ciriano, IElmarakeby, H.Elmarakeby, H.Engelen, B.Engelen, B.Cserzo, MEngin, Hatice BEngin, H.B.Engin, Hatice BEngin, H.B.Cubuk, CCurtis, CEsch, I.de Esch, IwanEsch, I.de Esch, IwanEvelo, ChrisEvelo, ChrisVan Daele, DEvelo, C.Evelo, C.Falcao, Andre OFalcao, Andre OFalcao, A.O.Falcao, A.O.Dang, CCFarag, SherifFarag, S.Farag, SherifDijkstra, TFarag, S.Fernandez-Lozano, CarlosFernandez-Lozano, CarlosFernandez-Lozano, C.Dopazo, JFernandez-Lozano, C.Fisch, K.Fisch, K.Fisch, KathleenFisch, KathleenDraghici, SFlobak, A.Drosou, AFlobak, A.Fornari, ChiaraFornari, C.Fornari, ChiaraDumontier, MFornari, C.Foroushani, Amir BForoushani, A.B.K.Ehrhart, FForoushani, Amir BForoushani, A.B.K.Fotso, D.C.Fotso, D.C.Fotso, Donatien CFotso, Donatien CEid, F-EFourches, DenisFourches, D.Fourches, D.ElHefnawi, MFourches, DenisFriend, StephenElmarakeby, HFriend, StephenFriend, S.Friend, S.Frigessi, ArnoldoFrigessi, A.Frigessi, A.Frigessi, ArnoldoEngelen, BGao, FengGao, FengGao, F.Engin, HBGao, F.Gao, XiaotingEsch, IGao, X.Gao, X.Gao, XiaotingGerold, J.M.Evelo, CGerold, Jeffrey MGerold, Jeffrey MGerold, J.M.Falcao, AOGestraud, P.Gestraud, PierreGestraud, P.Gestraud, PierreFarag, SGhosh, S.Ghosh, S.Ghosh, SamikGhosh, SamikGillberg, JussiGillberg, JussiGillberg, J.Fernandez-Lozano, CGillberg, J.Fisch, KGodoy-Lorite, AntoniaGodoy-Lorite, A.Godoy-Lorite, A.Godoy-Lorite, AntoniaGodynyuk, LizzyGodynyuk, L.Flobak, AGodynyuk, LizzyGodynyuk, L.Godzik, AdamFornari, CGodzik, A.Godzik, A.Godzik, AdamGoldenberg, A.Goldenberg, AnnaGoldenberg, A.Foroushani, ABKGoldenberg, AnnaGomez-Cabrero, DavidGomez-Cabrero, DavidGomez-Cabrero, D.Fotso, DCGomez-Cabrero, D.Gonen, M.Gonen, M.Fourches, DGonen, MehmetGonen, MehmetGraaf, C.Graaf, C.de Graaf, ChrisFriend, Sde Graaf, ChrisGray, HarryFrigessi, AGray, H.Gray, H.Gray, HarryGrechkin, MaximGao, FGrechkin, MaximGrechkin, M.Grechkin, M.Gao, XGuimera, RogerGuimera, R.Guimera, RogerGuimera, R.Gerold, JMGuney, EmreGuney, E.Guney, EmreGuney, E.Haibe-Kains, BenjaminHaibe-Kains, B.Haibe Kains, B.Gestraud, PHaibe-Kains, BenjaminHan, Y.Han, Y.Ghosh, SHan, YounghyunHan, YounghyunGillberg, JHase, T.Hase, TakeshiHase, TakeshiHase, T.He, D.He, DiHe, DiHe, D.Godoy-Lorite, AHe, L.He, LiyeHe, LiyeHe, L.Godynyuk, LHeath, L.S.Heath, Lenwood SHeath, L.S.Heath, Lenwood SGodzik, AHellton, K.H.Hellton, Kristoffer HGoldenberg, AHellton, K.H.Hellton, Kristoffer HHelmer-Citterich, ManuelaHelmer-Citterich, ManuelaHelmer-Citterich, M.Gomez-Cabrero, DHelmer-Citterich, M.Gonen, MHidalgo, M.R.Hidalgo, Marta RHidalgo, M.R.Hidalgo, Marta RHidru, DanielHidru, D.Hidru, D.Hidru, DanielGraaf, CHill, S.M.Gray, HHill, Steven MHill, S.M.Hill, Steven MHochreiter, SeppHochreiter, S.Hochreiter, SeppGrechkin, MHochreiter, S.Hong, S.Guimera, RHong, SeungpyoHong, S.Hong, SeungpyoHovig, E.Hovig, E.Hovig, EivindGuney, EHovig, EivindHsueh, Y.-C.Hsueh, Y.-C.Haibe-Kains, BHu, Z.Hu, ZhiyuanHan, YHu, ZhiyuanHu, Z.Hase, THuang, Justin KHuang, J.K.Huang, Justin KHuang, J.K.Huang, R SHuang, R SHuang, R.S.Huang, R.S.He, DHe, LHunyady, L.Hunyady, L.Hunyady, LászlóHunyady, LászlóHwang, J.Hwang, J.Heath, LSHwang, JinseubHwang, JinseubHwang, T.H.Hwang, Tae HHwang, T.H.Hellton, KHHwang, Tae HHwang, WoochangHwang, W.Helmer-Citterich, MHwang, WoochangHwang, W.Hwang, Y.Hidalgo, MRHwang, YongdeukHwang, Y.Hwang, YongdeukHidru, DIsayev, O.Isayev, OlexandrIsayev, OlexandrIsayev, O.Don?t Walk, O.B.Hill, SMDon?t Walk, O.B.Jack, JohnJack, J.Hochreiter, SJack, J.Jack, JohnHong, SJahandideh, SamadJahandideh, SamadJahandideh, S.Jahandideh, S.Ji, JiadongHovig, EJi, J.Ji, JiadongJi, J.Hsueh, Y-CJo, Y.Jo, Y.Kamola, P.J.Kamola, Piotr JKamola, P.J.Kamola, Piotr JHu, ZKanev, Georgi KKanev, Georgi KHuang, JKKanev, G.K.Kanev, G.K.Karacosta, LoukiaKaracosta, L.Karacosta, LoukiaKaracosta, L.Huang, RSKarimi, MostafaKarimi, MostafaHunyady, LKarimi, M.Karimi, M.Kaski, SamuelKaski, SamuelKaski, S.Kaski, S.Hwang, JKazanov, M.Hwang, THKazanov, MaratKazanov, MaratKazanov, M.Khamis, A.M.Khamis, A.M.Khamis, Abdullah MHwang, WKhamis, Abdullah MHwang, YKhan, S.A.Khan, S.A.Kiani, Narsis AKiani, N.A.Isayev, OKiani, N.A.Kiani, Narsis AKim, AllenKim, AllenKim, A.Walk, OBDKim, A.Kim, JinhanJack, JKim, J.Kim, J.Kim, JinhanJahandideh, SKim, JuntaeKim, J.Kim, J.Kim, JuntaeKim, KiseongKim, KiseongKim, K.Kim, K.Ji, JKim, KyungJo, YKim, K.Kim, K.Kim, KyungKim, S.Kim, SunkyuKim, SunkyuKamola, PJKim, S.Kim, YongsooKanev, GKKim, Y.Kim, YongsooKim, Y.Kim, Y.Kim, YunseongKim, YunseongKaracosta, LKim, Y.Kirk, P.D.W.Kirk, Paul DKirk, Paul DKirk, P.D.W.Karimi, MKaski, SKitano, HiroakiKitano, HiroakiKitano, H.Kitano, H.Klambauer, G.Klambauer, GunterKazanov, MKlambauer, GunterKlambauer, G.Knowles, D.Knowles, DavidKnowles, DavidKhamis, AMKnowles, D.Ko, M.Ko, M.Ko, MelissaKhan, SAKo, MelissaKohn-Luque, AlvaroKohn-Luque, A.Kohn-Luque, A.Kiani, NAKohn-Luque, AlvaroKooistra, A.J.Kooistra, Albert JKooistra, A.J.Kim, AKooistra, Albert JKuenemann, M.A.Kuenemann, M.A.Kuenemann, Melaine AKim, JKuenemann, Melaine AKuiper, M.Kim, JKuiper, MartinKuiper, M.Kuiper, MartinKurz, ChristophKurz, C.Kurz, ChristophKurz, C.Kim, KKwon, MijinKwon, M.Kwon, MijinKwon, M.Kim, KLaarhoven, T.Laarhoven, T.Kim, SLaegreid, AstridLaegreid, A.Kim, YLaegreid, AstridLaegreid, A.Lederer, S.Lederer, S.Lederer, SimoneLederer, SimoneKim, YKirk, PDWLee, HeewonLee, H.Lee, HeewonLee, H.Kitano, HJeon, LeeLee, J.Jeon, LeeLee, J.Lee, Y.W.Klambauer, GLee, Y.W.Lepp_aho, E.Knowles, DLepp_aho, E.Lewis, RichardLewis, R.Ko, MLewis, RichardLewis, R.Kohn-Luque, ALi, JingLi, JingLi, J.Li, J.Lang, LiKooistra, AJLi, L.Lang, LiLi, L.Kuenemann, MALiley, J.Liley, JamesLiley, JamesLiley, J.Kuiper, MLim, W.K.Lim, W.K.Lin, C.Lin, ChiehLin, ChiehLin, C.Kurz, CLiu, Y.Liu, YiyiLiu, Y.Liu, 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